BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491899
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28640.2 | Symbols: IAA11 | indole-3-acetic acid inducible 1... 1663 0.0
> AT4G28640.2 | Symbols: IAA11 | indole-3-acetic acid inducible
11 | chr4:14142135-14143969 FORWARD LENGTH=1103
Length=1103
Score = 1663 bits (900), Expect = 0.0
Identities = 1036/1097 (94%), Gaps = 28/1097 (3%)
Strand=Plus/Plus
Query 1 GTGTCTTCTTGTTCATCCTTTGTTTCCCTTTTTCTTTCTCACTGTTTCTGCCTTACTTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGTCTTCTTGTTCATCCTTTGTTTCCCTTTTTCTTTCTCACTGTTTCTGCCTTACTTAA 60
Query 61 AGTCTCAATCTTTGCTTCAAATTCAACCCATCTCTTCTTCTTCC-TTCCCTCACAATCAA 119
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 61 AGTCTCAATCTTTGCTTCAAATTCAACCCATCTCTTTTTCCTCCCTTCCCTCACAATCAA 120
Query 120 ATCAAATCTCAATTCTCAGCTTCTGGTTT-GTCTTAAATGGAAGGCGGTTCCGCTAGTGG 178
| | ||| ||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 121 A--A--TCTTAATTCTCAGCTTCTGGTTTTGTCGAAAATGGAAGGCGGTTCCGCTAGTGG 176
Query 179 ATCAGCTTCGGCTTTGTCAAACGATGAAAATCTCGTCGTTTCTTGTGAAGATTCTTCTTC 238
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 177 ATCGGCTTCGGCTTTGTCAAACGATGAAAATCTCGTCGTTTCTTGTGAGGATTCTTCTTC 236
Query 239 TCCTGTAGGGAATGAGCTCGAGCTTGGTCTTACGTTGAGCCTTGGTC-CAAAAGGGTATC 297
|||| ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||
Sbjct 237 TCCTATAGGGAATGAGCTTGAGCTTGGTCTTACGTTGAGCCTTGGTCGCAAA-GGGTATC 295
Query 298 GAGATTGTAGGGTTTCTTATGCTGATGAttcttcttcttcttcgtcttcatcttcttctc 357
||||||||||||||| | ||||||||||||||||||||||| || |||||||||||
Sbjct 296 GAGATTGTAGGGTTT---ACGCTGATGATTCTTCTTCTTCTTCATC---ATCTTCTTCTC 349
Query 358 tGAGCAGAGCTAGCGTAATTGCTGGGATCAAGAGAACAGCTGATTCCATGGCTGCAACTA 417
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 350 TGAGCAGAGCTAGCGTAATTGCTGGGATCAAGAGGACAGCTGATTCCATGGCTGCAACTA 409
Query 418 GTGGGCAAGTTGTGGGATGGCCACCAATAAGGACTTACAGAATGAACAGTATGGTTAACC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GTGGGCAAGTTGTGGGATGGCCACCAATAAGGACTTACAGAATGAACAGTATGGTTAACC 469
Query 478 AGGCTAAGGCTTCAGCCACTGAAGATCCGAACTTGGAGATAAGTCAAGAAGTAAACAAGA 537
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 470 AAGCTAAGGCTTCAGCCACTGAAGATCCGAACTTGGAGATAAGTCAAGCCGTAAACAAGA 529
Query 538 ATAGAACTGATGCAACAAAGATGAGAAATTCCATGTTTGTTAAAGTGACTATGGATGGCA 597
|||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 530 ATAGAAGTGATTCAACAAAGATGAGAAATTCCATGTTTGTTAAGGTGACTATGGATGGCA 589
Query 598 TTCCGATTGGAAGGAAAATCGATCTGAATGCTCATAAATGCTATGAATCATTGTCAAACA 657
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TTCCTATTGGAAGGAAAATCGATCTGAATGCTCATAAATGCTATGAATCATTGTCAAACA 649
Query 658 CTCTTGAAGAAATGTTTCTGAAACCCAAATTAGGTTCAAGCACACTAGAAACCGATGGTC 717
|||| || ||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 650 CTCTAGAGGAAATGTTTCTGAAACCTAAATTAGGTTCACGCACACTAGAAACCGATGGTC 709
Query 718 ACATGGAAACACCGCTCAAGATACTACCAGATGGGTCTTCCGGATTAGTACTAACGTATG 777
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ACATGGAAACACCGGTCAAGATACTACCAGATGGGTCTTCCGGATTAGTACTAACGTATG 769
Query 778 AAGACAAGGAAGGAGATTGGATGCTTGTTGGCGACGTTCCGTGGGGGATGTTTATTGGTT 837
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 770 AAGACAAGGAAGGAGATTGGATGCTTGTTGGCGATGTTCCGTGGGGGATGTTTATTGGTT 829
Query 838 CCGTGAGAAGGCTCCGGATAATGAAAACATCGGAAGCTACTGGTAAAGCTCAAATGATAT 897
| |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 830 CAGTGAGAAGGCTCCGGATAATGAAAACATCGGAGGCTACTGGTAAAG---A--TGATAT 884
Query 898 TATGAAGCAAATAATAATCTACGAAGAACCCTTTCTGTTCGAAGCCAGTAATAAGACGGA 957
|||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||
Sbjct 885 TATGAAGCAAATAATAATCTACGAAGAACCCTTTATGTTTGAAGC-AGTAATAAGACAGA 943
Query 958 TCACAGATCAAAGAGAAGACAAAAACATGGTAAGAAGcttcttcttcttcttctctCCCC 1017
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct 944 TCACAGATCAAAGAGAAGACAAAAACATTGTAAGAAGCTTCTTCTTCTTCT-CTC-CCC- 1000
Query 1018 TTTTACAGttt-tttt--GGCTCTGCCAATTTTCTTT-AGTTAGTTATATGTTCTCTTTG 1073
||| ||||||| |||| |||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1001 TTT-ACAGTTTCTTTTTTGGCTCTGCCATTTTTCTTTTAGTTAGTTATATGTTCTCTTTG 1059
Query 1074 TAAATCACACTTCAAAA 1090
|||||||||||| ||||
Sbjct 1060 TAAATCACACTTTAAAA 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5