BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491900
Length=2107
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28630.1 | Symbols: ATM1, ATATM1 | ABC transporter of the mi... 2852 0.0
AT4G28620.1 | Symbols: ATATM2, ATM2 | ABC transporter of the mi... 2305 0.0
AT5G58270.1 | Symbols: STA1, ATATM3, ATM3 | ABC transporter of ... 1397 0.0
> AT4G28630.1 | Symbols: ATM1, ATATM1 | ABC transporter of the
mitochondrion 1 | chr4:14138359-14140958 REVERSE LENGTH=2276
Length=2276
Score = 2852 bits (1544), Expect = 0.0
Identities = 1945/2131 (91%), Gaps = 57/2131 (3%)
Strand=Plus/Plus
Query 1 ATGATGAGGGGGTCTCGGTTTCTCCTCTCTCGCGCTTCTCTTTCTTATCGTCTTCGCTCT 60
||||||||||| ||||||||||||||||||||||||||||| | | | ||||||||||||
Sbjct 64 ATGATGAGGGGATCTCGGTTTCTCCTCTCTCGCGCTTCTCTGTATCACCGTCTTCGCTCT 123
Query 61 GATTTTCATCATCAC-----C-ACAATTTCATCAAACGTAGCTCAAGTCAAAGATCACCA 114
||| ||| |||||| | || ||| |||||||||||||||| ||| |||||||||
Sbjct 124 GATCATCACCATCACAGTTTCTCCAGTTTTATCAAACGTAGCTCAATTCAGAGATCACCA 183
Query 115 GCTATCAATGCATTCCTCTCCGATCCATCTCCATCTCCATCTCTGGTCAACGCACGCGTC 174
||||||||||||||| || |||||||||||||||||||||||| ||||||||||| |||
Sbjct 184 GCTATCAATGCATTCTTCACCGATCCATCTCCATCTCCATCTCCAGTCAACGCACGAGTC 243
Query 175 GTGTTCTTCTCCACTTCAACTTCAACTCCAAATCAAGATCAGGATCAAACCACCACTAAA 234
| |||||||| ||||||||||||||| | ||| |||| ||| | |||
Sbjct 244 TTCTTCTTCTCAACTTCAACTTCAACT-C----CAA-ATCAAGAT----------C-AAA 286
Query 235 TCTCATaaaaaaaTCAACACGACGTCGTCTCAA-AAGATCCTCCGCACGATTTCAAGCTA 293
| | || |||| | | || ||| || ||||||||||||||||||||||||||
Sbjct 287 -C-C-------AA--AACA-G-CATCATCT-AAGAAGATCCTCCGCACGATTTCAAGCTA 332
Query 294 TCTATGGATGAAAGACAACCCAGAACTCCGATTCAGAGTCATCGCTGCTTTAGCGTGTCT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TCTATGGATGAAAGACAACCCAGAACTCCGATTCAGAGTCATCGCTGCTTTAGCGTGTCT 392
Query 354 -ATTAGGAGCTAAGTTCTTGAATGTTCAATTTCCTTTCCTCTTCAAAGTAGCTATCGATT 412
| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 393 CA-TAGGAGCTAAGTTCTTGAATGTTCAAGTTCCTTTCCTCTTCAAATTATCTATCGATT 451
Query 413 TACTCTCTTCATCTTCA---TCAACAATCGCTGATTCAAATCTTTATCTTCTTGCTGCTT 469
|||||||||||| |||| ||||||||| |||||||||||| |||||| ||||||||||
Sbjct 452 TACTCTCTTCATATTCATCTTCAACAATCACTGATTCAAATCCTTATCTACTTGCTGCTT 511
Query 470 TCGCTACTCCTTCTTCTGTTCTCATTGGTTATGGCATTGCTCGATCTGGATCTTCTGCTT 529
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 512 TCGCTACTCCTTCTTCCGTTCTCATTGGCTATGGCATTGCTCGATCTGGATCTTCAGCTT 571
Query 530 TTAACGAGCTTCGTAGTGCTGTTTTCTCTAAAGTAGCTCTCCGCACAATACGATCCGTTT 589
||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 572 TTAACGAGCTTCGTACTGCTGTTTTCTCCAAAGTATCTCTCCGCACAATACGATCTGTTT 631
Query 590 CTCGTAAAGTGCTCTCGCATTTACACGATCTTGATCTTCGTTACCATTTGAATCGAGAAA 649
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 632 CTCGTAAAGTGCTCTCGCATTTACATGATCTTGATCTTCGTTACCATTTGAATCGAGAAA 691
Query 650 CAGGAGCTTTGAATAGAATCATTGATCGTGGAAGCCGCGCTATTAACACGATCCTCTCAG 709
||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
Sbjct 692 CAGGAGCTTTGAATAGAATCATTGACCGTGGAAGTCGCGCGATTAACACGATCCTCTCTG 751
Query 710 CTATGGTTTTCAATGTTGTTCCAACGATCTTGGAGATATCTATGGTCACAGGTATATTAG 769
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 752 CTATGGTTTTCAATGTTGTTCCAACGATCTTGGAGATATCAATGGTCACAGGTATATTAG 811
Query 770 CATACAATTTTGGACCTGTTTTTGCTTTGATCACTTCTCTTTCCGTTGGATCATACATTG 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 812 CATACAATTTTGGACCTGTTTTTGCTTTGATCACTTCTCTTTCCGTTGGATCATACATAG 871
Query 830 CTTTCACATTGGTTGTGACACAATGGAGAACTAAGTTTAGATTAGCTATGAATAAAGCTG 889
|||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||
Sbjct 872 CTTTCACATTGGTTGTGACACAGTATAGAACTAAGTTTAGAAAAGCTATGAACCAAGCTG 931
Query 890 ATAATGATGCTAGCACAAGAGCTATTGATTCTCTTATAAACTACGAGACTGTTAAGTATT 949
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 932 ATAATGATGCAAGCACAAGAGCTATTGATTCTCTTGTAAACTACGAGACTGTTAAGTATT 991
Query 950 TCAATAACGAAGATTACGAAGGGAGAAAGTACGATGATTTACTCGAAAGATATGAAGATG 1009
| || |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 992 TTAACAACGAAGATTACGAAGCGAGAAAGTACGATGATTTACTCGGAAGATATGAAGATG 1051
Query 1010 CTGCATTGCGAACTCAGAAAAGTCTTGCCTTTTTAGATTTTGGACAGAGTTTTATATTTA 1069
||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1052 CTGCATTGCAAACTCAGAAGAGTCTTGCGTTTTTAGATTTTGGACAGAGTTTTATATTTA 1111
Query 1070 GTACAGCTTTGTCAACATCAATGGTGTTGTGTTCTCAAGGGATTATGAATGGAGAGATGA 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 GTACAGCTTTGTCAACATCAATGGTGTTGTGTTCTCAAGGGATTATGAATGGAGAGATGA 1171
Query 1130 CAGTTGGTGATTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTACT 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 CAGTTGGTGATTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTACT 1231
Query 1190 TTCTTGGTGGTGTTTACCGCGAAACCGTTCAGAGCCTTATGGATATGAAATCAATGTTCC 1249
|||| |||||||||||||| |||||||||||| | ||| | |||||||||||| ||||||
Sbjct 1232 TTCTCGGTGGTGTTTACCGTGAAACCGTTCAGGGTCTTGTTGATATGAAATCATTGTTCC 1291
Query 1250 AGTTGCTAGAGGAGAGATCCGATATCGGAGATAAAGATACAAATACAAAGCTTCCTCTTC 1309
||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||| ||
Sbjct 1292 AGTTGCTAGAGGAGAGATCCGATATTGGAGATAAAGATACAGAGACAAAGCTACCTCCTC 1351
Query 1310 TTGTTCTGAAAGGTGGAAGTATTAGTTTTGAGAATGTACACTTTAGTTATCTACCGGAGA 1369
||||||||| ||||||||| || ||||||||||||||||| ||||||||||| || ||||
Sbjct 1352 TTGTTCTGAGAGGTGGAAGCATCAGTTTTGAGAATGTACATTTTAGTTATCTGCCAGAGA 1411
Query 1370 GGAAGATTTTAGATGGGATTTCATTTGAGGTACCGGCGGGGAAAAGTGTGGCGATTGTTG 1429
| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1412 GAAAGATTTTGGATGGGATTTCATTTGAGGTACCGGCAGGGAAAAGTGTAGCGATTGTTG 1471
Query 1430 GTAGTAGCGGAAGCGGAAAATCGACGATTCTTAGAATGATATTT-AGATTCTTTGACACA 1488
|||||||||||||||| ||||||||||||||||||||||| ||| || ||||||||||||
Sbjct 1472 GTAGTAGCGGAAGCGGCAAATCGACGATTCTTAGAATGAT-TTTCAGGTTCTTTGACACA 1530
Query 1489 GATTCCGGAAATGTAAAGATTGATGGTCAGGATATAAAGGAAGTGAGATTAGAGAGTCTT 1548
||||| || ||||| | |||||||||||| |||||||||||||||| | |||||||||||
Sbjct 1531 GATTCTGGTAATGTTAGGATTGATGGTCAAGATATAAAGGAAGTGACACTAGAGAGTCTT 1590
Query 1549 CGAAGCTCCATTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAATGACACAATATTTCAC 1608
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 CGAAGCTGCATTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAATGACACAATATTTCAC 1650
Query 1609 AACATTCACTATGGAAATCTTTCAGCAACAGAGGAAGAGGTGTACGAAGCAGCTCGGCGA 1668
||||||||||||||||| |||||||||||||| |||||||||||||| |||||| |||||
Sbjct 1651 AACATTCACTATGGAAACCTTTCAGCAACAGAAGAAGAGGTGTACGATGCAGCTAGGCGA 1710
Query 1669 GCAGCGATTCACGATACGATCATGAAATTCCCGGATAAATATAGGACCGCGGTGGGAGAA 1728
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1711 GCAGTGATTCACGATACGATCATGAAATTTCCGGATAAATATTCGACCGCGGTGGGAGAA 1770
Query 1729 AGAGGGTTGATGCTGAGTGGTGGAGAGAAACAAAGAGTGGCACTGGCTCGTGCCTTTCTG 1788
|||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1771 AGAGGGCTGATGCTGAGTGGTGGAGAAAAACAAAGAGTGGCACTTGCTCGTGCCTTTCTG 1830
Query 1789 AAATCACCTGCAATCCTGTTGTGTGACGAAGCAACGAGTGCGCTTGACAGTAAAACAGAG 1848
|||||||| || || || ||||||||||||||||||| ||||||||| |||||||| |||
Sbjct 1831 AAATCACCAGCGATTCTCTTGTGTGACGAAGCAACGAATGCGCTTGATAGTAAAACCGAG 1890
Query 1849 GCAGAGATAATGAAAACGCTCAGATCGTTAGCGAGTAACAGAACTTGCGTCTTCATTGCA 1908
|||||||||||||||||| |||| ||| |||||||||||||||| ||| | |||||||||
Sbjct 1891 GCAGAGATAATGAAAACGTTCAGGTCGCTAGCGAGTAACAGAACATGCATTTTCATTGCA 1950
Query 1909 CATAGGCTGACCACTGCGATGCAATGTGATGAAATAATAGTAATGGAGAAAGGGAAAGTA 1968
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1951 CATAGGCTGACCACTGCGATGCAATGTGATGAGATAATAGTAATGGAGAAAGGGAAAGTG 2010
Query 1969 GTGGAAAAAGGGACACACCAAGTGTTGTTGGGGAAATCTGGGAGATACGCCAATTTGTGG 2028
||||||||||||||||||||||||||||||| ||||||||| |||||||| || || |||
Sbjct 2011 GTGGAAAAAGGGACACACCAAGTGTTGTTGGAGAAATCTGGCAGATACGCTAAATTATGG 2070
Query 2029 ACACAACAAAACAGTAAATTGGAGGTGTGAA----AAGAGC-A-A--G-T-GT-TG-GGG 2076
|||||||||||||||| | |||||||||||| |||||| | | | | || | |||
Sbjct 2071 ACACAACAAAACAGTACACTGGAGGTGTGAATCTCAAGAGCTAGACAGCTAGTGTTTGGG 2130
Query 2077 TTCTGTTTTCGCCTAATTAATTCtttttttt 2107
|||||||||||||| | ||||||||||||||
Sbjct 2131 TTCTGTTTTCGCCTCACTAATTCTTTTTTTT 2161
> AT4G28620.1 | Symbols: ATATM2, ATM2 | ABC transporter of the
mitochondrion 2 | chr4:14135526-14137953 REVERSE LENGTH=2043
Length=2043
Score = 2305 bits (1248), Expect = 0.0
Identities = 1633/1821 (90%), Gaps = 18/1821 (1%)
Strand=Plus/Plus
Query 244 aaaaTCAACACGACGTCGTCTCAAAAGATCCTCCGCACGATTTCAAGCTATCTATGGATG 303
|||||||||| ||||||||| | || ||||| || | ||||||||||||||||||||||
Sbjct 235 AAAATCAACAGGACGTCGTCGGAGAATATCCTTCGGATGATTTCAAGCTATCTATGGATG 294
Query 304 AAAGACAACCCAGAACTCCGATTCAGAGTCATCGCTGCTTTAGCGTGTCTATTAGGAGCT 363
|||||||||||| ||||| | |||||||||||| ||||||| |||||||| | ||||||
Sbjct 295 AAAGACAACCCAAAACTCTGTTTCAGAGTCATCTCTGCTTTTGCGTGTCTCGTGGGAGCT 354
Query 364 AAGTTCTTGAATGTTCAATTTCCTTTCCTCTTCAAAGTAGCTATCGATTTACTCTCTTCA 423
|||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct 355 AAGTTCTTGAATGTTCAAGTTCCTTTCCTCTTCAAAGTAGCTATAGATTGGCTCTCTTCA 414
Query 424 TCTTCATCAACAATCGCTGATTCAAATCTTTATCTTCTTGCTGCTTTCGCTACTCCTTCT 483
||||||| ||| ||||||||| | ||| || ||||||||||||||||||||||
Sbjct 415 TCTTCAT------TCGTTGATTCAAACCCTTACCTAGTTGCTGCTTTCGCTACTCCTTCC 468
Query 484 TCTGTTCTCATTGGTTATGGCATTGCTCGATCTGGATCTTCTGCTTTTAACGAGCTTCGT 543
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 469 TCTGTTCTCATTGGTTATGGCATTGCTCGATCTGGTTCTTCTGCTTTCAACGAGCTTCGT 528
Query 544 AGT-GCTGTTTTCTCTAAAGTAGCTCTCCGCACAATACGATCCGTTTCTCGTAAAGTGCT 602
| | | ||||||||| ||||||||||||||||| |||||| || | ||| | ||||| ||
Sbjct 529 ACTAG-TGTTTTCTCCAAAGTAGCTCTCCGCACCATACGAACCATCTCTAGAAAAGTTCT 587
Query 603 CTCGCATTTACACGATCTTGATCTTCGTTACCATTTGAATCGAGAAACAGGAGCTTTGAA 662
||||| |||||||||||| ||||||||||||||| | ||| |||| ||||| ||||||||
Sbjct 588 CTCGCGTTTACACGATCTCGATCTTCGTTACCATCTAAATAGAGACACAGGTGCTTTGAA 647
Query 663 TAGAATCATTGATCGTGGAAGCCGCGCTATTAACACGATCCTCTCAGCTATGGTTTTCAA 722
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 648 CAGAATCATTGATCGTGGAAGCCGCGCTATAAACACGATTCTCTCAGCTATGGTTTTCAA 707
Query 723 TGTTGTTCCAACGATCTTGGAGATATCTATGGTCACAGGTATATTAGCATACAATTTTGG 782
|| | || ||||||||||||||||| |||||| || |||||||||||||||| |||||
Sbjct 708 CATTATGCCCACGATCTTGGAGATATCAATGGTCTCATGTATATTAGCATACAAATTTGG 767
Query 783 ACCTGTTTTTGCTTTGATCACTTCTCTTTCCGTTGGATCATACATTGCTTTCACATTGGT 842
| |||||| ||| ||||| |||| |||||| ||||||||||| || || ||||| ||||
Sbjct 768 AGCTGTTTATGCATTGATTACTTGTCTTTCTGTTGGATCATATATAGCATTCACGTTGGC 827
Query 843 TGTGACACAATGGAGAACT-AAGTTTAGATTAGCTATGAATAAAGCTGATAATGATGCTA 901
| |||| || ||||||| | ||| ||||| |||||||||| ||||||| || |||||||
Sbjct 828 TATGACGCAGTGGAGAA-TCAAGATTAGAAAAGCTATGAATGAAGCTGAAAACGATGCTA 886
Query 902 GCACAAGAGCTATTGATTCTCTTATAAACTACGAGACTGTTAAGTATTTCAATAACGAAG 961
|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 887 GCACCAGAGCCATTGACTCTCTCATAAACTACGAGACTGTTAAGTATTTCAACAACGAAG 946
Query 962 ATTACGAAGGGAGAAAGTACGATGATTTACTCGAAAGA-TATGAAGATGCTGCATTGCGA 1020
||||||||| ||||||||||| | |||| ||||| | || |||||||||||||||| |
Sbjct 947 ATTACGAAGCTCGAAAGTACGATCAGTTACACGAAA-ATTACGAAGATGCTGCATTGCAA 1005
Query 1021 ACTCAGAAAAGTC-TTGCCTTTTTAGATTTTGGACAGAGTTTTATATTTAGTACAGCTTT 1079
| || |||||| | ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1006 AGTCGGAAAAG-CTTTGCCTTATTAAATTTTGGACAGAGTTTTATATTTAGTACAGCTTT 1064
Query 1080 GTCAACATCAATGGTGTTGTGTTCTCAAGGGATTATGAATGGAGAGATGACAGTTGGTGA 1139
||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1065 GTCAACAGCAATGGTGTTGTGTTCTCAGGGGATTATGAATGGTCAGATGACAGTTGGTGA 1124
Query 1140 TTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTACTTTCTTGGTGG 1199
||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || ||
Sbjct 1125 TTTGGTGATGGTGAATGGTCTCCTCTTTCAACTGTCTCTTCCTCTTTACTTTCTCGG-GG 1183
Query 1200 T-GTTTACCGCGAAACCGTTCAGAGCCTTATGGATATGAAATCAATGTTCCAGTTGCTAG 1258
| |||||| |||| ||||||||| | ||| | || |||||||| ||||| |||| ||||
Sbjct 1184 TTGTTTACAGCGACACCGTTCAGGGACTTGTCGACATGAAATCGATGTTTAAGTTTCTAG 1243
Query 1259 AGGAGAGATCCGATATCGGAGATAAAGATACAAATACAAAGCTTCCTCTTCTTGTTCTGA 1318
|||||||||| ||||||||||||||||||| | | | ||||| |||| |||||||||||
Sbjct 1244 AGGAGAGATCTGATATCGGAGATAAAGATATAGACAGGAAGCTCCCTCCTCTTGTTCTGA 1303
Query 1319 AAGGTGGAAGTATTAGTTTTGAGAATGTACACTTTAGTTATCTACCGGAGAGGAAGATTT 1378
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1304 AAGGTGGAAGCATTAGTTTTGAGAATGTACATTTTAGTTATCTACCGGAGAGAAAGATTT 1363
Query 1379 TAGATGGGATTTCATTTGAGGTACCGGCGGGGAAAAGTGTGGCGATTGTTGGTAGTAGCG 1438
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1364 TAGATGGGATTTCATTTGAGGTACCGGCAGGGAAAAGTGTGGCGATTGTCGGTAGTAGCG 1423
Query 1439 GAAGCGGAAAATCGACGATTCTTAGAATGATATTTAGATTCTTTGACACAGATTCCGGAA 1498
|||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct 1424 GAAGCGGAAAATCGACTATTCTTAGAATGATATTCAGGTTCTTTGATGTAGATTCCGGAA 1483
Query 1499 ATGTAAAGATTGATGGTCAGGATATAAAGGAAGTGAGATTAGAGAGTCTTCGAAGCTCCA 1558
||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1484 ATGTAAAAATTGATGGTCAGGATATAAAGGAAGTGAGACTAGAGAGTCTTAGAAGCTCCA 1543
Query 1559 TTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAATGACACAATATTTCACAACATTCACT 1618
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 1544 TTGGAGTTGTCCCTCAAGATACTGTGCTCTTTAACGACACTATATTTCACAACATTCACT 1603
Query 1619 ATGGAAATCTTTCAGCAACAGAGGAAGAGGTGTACGAA-GCAGCTCGGCGAGCAGCGATT 1677
||||||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1604 ATGGAAACCTTTCAGCAACAGAGGAAGAGGTGTAC-AATGCAGCTCGACGAGCAGCGATT 1662
Query 1678 CACGATACGATCATGAAATTCCCGGATAAATATAGGACCGCGGTGGGAGAAAGAGGGTTG 1737
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 1663 CACGATACGATCATGAAATTCCCTGATAAATATTCGACCGCGGTGGGAGAAAGAGGGCTG 1722
Query 1738 ATGCTGAGTGGTGGAGAGAAACAAAGAGTGGCACTGGCTCGTGCCTTTCTGAAATCACCT 1797
||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct 1723 ATGCTGAGTGGTGGAGAGAAACAGAGGGTGGCACTTGCTCGTGCATTTCTGAAATCACCA 1782
Query 1798 GCAATCCTGTTGTGTGACGAAGCAACGAGTGCGCTTGACAGTAAAACAGAGGCAGAGATA 1857
|||||||| ||||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 1783 GCAATCCTATTGTGTGACGAAGCAACAAGTGCACTCGACAGTAAAACCGAGGCAGAGATA 1842
Query 1858 ATGAAAACGCTCAGATCGTTAGCGAGTAACAGAACTTGCGTCTTCATTGCACATAGGCTG 1917
||||||||||| || ||| ||||||||||||| |||||| | |||||||||||||| |||
Sbjct 1843 ATGAAAACGCTGAGGTCGCTAGCGAGTAACAGGACTTGCATTTTCATTGCACATAGACTG 1902
Query 1918 ACCACTGCGATGCAATGTGATGAAATAATAGTAATGGAGAAAGGGAAAGTAGTGGAAAAA 1977
|||||||| |||||||||||||| ||| |||||||||||||||| ||||| |||||||||
Sbjct 1903 ACCACTGCAATGCAATGTGATGAGATATTAGTAATGGAGAAAGGAAAAGTGGTGGAAAAA 1962
Query 1978 GGGACACACCAAGTGTTGTTGGGGAAATCTGGGAGATACGCCAATTTGTGGACACAACAA 2037
||||||||| |||||||||||||||||||||| |||||||| || || ||||||||||||
Sbjct 1963 GGGACACACGAAGTGTTGTTGGGGAAATCTGGCAGATACGCTAAATTATGGACACAACAA 2022
Query 2038 AACAGTAAATTGGAGGTGTGA 2058
|||||||||||||||||||||
Sbjct 2023 AACAGTAAATTGGAGGTGTGA 2043
> AT5G58270.1 | Symbols: STA1, ATATM3, ATM3 | ABC transporter of
the mitochondrion 3 | chr5:23562142-23567190 FORWARD LENGTH=2363
Length=2363
Score = 1397 bits (756), Expect = 0.0
Identities = 1479/1820 (81%), Gaps = 81/1820 (4%)
Strand=Plus/Plus
Query 268 AAGATCCTCCGCACGATTTCAAGCTATCTATGGATGAAAGACAACCCAGAACTCCGATTC 327
||||| ||||| ||| || | ||||| | ||||||| |||||| |||||| |||| |||
Sbjct 390 AAGATTCTCCGTACGCTTGCTGGCTATTTGTGGATGAGAGACAATCCAGAATTCCGTTTC 449
Query 328 AGAGTCATCGCTGCTTTAGCG-TGTCTATTAGGAGCTAAGTTCTTGAATGTTCAATTTCC 386
|| |||||||||||||| | | | ||| | || |||||| |||||||||| ||| | ||
Sbjct 450 AGGGTCATCGCTGCTTT-GGGTTTTCTCGTGGGTGCTAAGGTCTTGAATGTCCAAGTCCC 508
Query 387 TTTCCTCTTCAAAGTAGCTATCGATTTACTCT-CTTCA--T--C--T--T----CATCA- 432
||||||||||||| ||||| | |||| || | ||||| | | | | | |||
Sbjct 509 TTTCCTCTTCAAATTAGCTGTTGATTGGCT-TGCTTCAGCTACCGGTACTGGAGCCTCAC 567
Query 433 --A-CA--ATCGCTGATTCAAATCTTTA-TCTTCTTGCTGCTTTCGCTACTCCTTCTTCT 486
| || |||||| | |||| | | ||||||| ||| ||| ||||||||| || ||
Sbjct 568 TTACCACCTTCGCTGCTACAAA-CCCAACTCTTCTTACTGTTTTTGCTACTCCTGCTGCT 626
Query 487 GTTCTCATTGGTTATGGCATTGCTC-GATCTGGATCTTCTGCTTTTAACGAGCTTCGTAG 545
||||||||||| || || ||||||| || | || |||||||||||||| || |||||||
Sbjct 627 GTTCTCATTGGATACGGGATTGCTCGGA-CGGGTTCTTCTGCTTTTAATGAACTTCGTAC 685
Query 546 TGCTGTTTTCTCTAAAGTAGCTCTCCGCACAATACGATCCGTTTCTCGTAAA-GTGCTCT 604
|||||| |||||||| ||||||||||| ||||||||||| |||||| | ||| ||| |||
Sbjct 686 TGCTGTGTTCTCTAAGGTAGCTCTCCGAACAATACGATCTGTTTCTAG-AAAGGTGTTCT 744
Query 605 CGCATTTACACGATCTTGATCTTCGTTACCATTTGAA-TCGAGAAACAGG-AGCTTTGAA 662
| |||||||| |||||||| ||||||||||| | || |||||||||||| || |||||
Sbjct 745 CACATTTACATGATCTTGACCTTCGTTACCACCT-AAGTCGAGAAACAGGCGGC-TTGAA 802
Query 663 TAGAATCATTGATCGTGGAAGCCGCGCTATTAACACGATCCTCTCAGCTATGGTTTTCAA 722
|| || ||||||||||| ||||| || || || |||||||||||||||||||||||
Sbjct 803 CAGGATTATTGATCGTGGTAGCCGTGCAATAAATTTTATCCTCTCAGCTATGGTTTTCAA 862
Query 723 TGTTGTTCCAACGATCTTGGAGATATCTATGGTCA-CAGGTATATTAGCATACAATTTTG 781
||||||||| || || ||||||||||||||||| | |||||||| | |||||||| ||||
Sbjct 863 TGTTGTTCCTACCATATTGGAGATATCTATGGT-ATCAGGTATACTGGCATACAAGTTTG 921
Query 782 GACCTGTTTTTGCTTTGATCACTTCTCTTTCCGTTGGATCATACATTGCTTTCACATTGG 841
|| ||| |||||| | ||| |||||||| |||||||||||||| || | ||||||||| |
Sbjct 922 GAGCTGCTTTTGCCTGGATTACTTCTCTCTCCGTTGGATCATATATCGTTTTCACATTAG 981
Query 842 TTGTGACACAATGGAGAACTAAGTTTAGATTAG-CTATGAATAAAGCTGATAATGATGCT 900
||||||||| ||| |||| ||||||||| || ||||||| ||||||||||||||||||
Sbjct 982 CTGTGACACAGTGGCGAACCAAGTTTAGAA-AGGCTATGAACAAAGCTGATAATGATGCT 1040
Query 901 AGCACAAGAGCTATTGATTCTCTTATAAACTACGAGACTGTTAAGTATTTCAATAACGAA 960
|||||||| || ||||||||||| ||||| || |||||||| || ||||| || || |||
Sbjct 1041 AGCACAAGGGCCATTGATTCTCTGATAAATTATGAGACTGTCAAATATTTTAACAATGAA 1100
Query 961 GATTACGAAGGGAGAAA-GTACGATGATTTACTCGAAAGA-TATGAAGATGCTGCATTGC 1018
| ||| || || |||| ||| || | || || |||| | |||||||||||||| |||
Sbjct 1101 GGTTATGA-GGCTGAAAAGTATGACCAGTTCCT-GAAAAAATATGAAGATGCTGCCCTGC 1158
Query 1019 GAACTCAGAA-AAGTCTTGCCTTT-TTAGATTTTGGACAGAGTTTTATATTTAGTACAGC 1076
|||||| || ||||||||| ||| ||| | |||||||| ||| | ||||||||||||||
Sbjct 1159 AAACTCA-AAGAAGTCTTGC-TTTCTTAAACTTTGGACAAAGTATCATATTTAGTACAGC 1216
Query 1077 TTTGTCAACATCAATGGTGTTGTGTTCTCAAGGG-ATTATGAATGGAGAGATGACAGTTG 1135
||| |||||| ||||||||||||| ||||| ||| || |||||||| |||||||||| |
Sbjct 1217 TTTATCAACAGCAATGGTGTTGTGCTCTCA-GGGTATCATGAATGGCCAGATGACAGTCG 1275
Query 1136 GTGATTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTACTTTCTTG 1195
|||||||||| ||||||||||| ||||||||||| ||||||||||||| | ||| |||
Sbjct 1276 GTGATTTGGTTATGGTGAATGGACTTCTCTTTCAGCTGTCTCTTCCTCTAAATTTT-TTG 1334
Query 1196 G-TGGTGTTTACCGCGAAACCGTTCAGAGCCTTATGGATATGAAATCAATGTTCCAGTTG 1254
| | |||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct 1335 GGTAGTGTTTACCGTGAAACAATTCAGAGCCTTGTGGACATGAAATCAATGTTCCAGTTG 1394
Query 1255 CTAGAGGAGAGATCCGATATCGGAGATAAAGATACAAAT-AC--AAAGCTTCCTCTTCTT 1311
|||||||||| ||| || ||| | | || ||||| | || ||||| | ||||
Sbjct 1395 CTAGAGGAGAAATCTGACATC--ACA-AA---TACAAGTGACGCAAAGC--C-TCTT--- 1442
Query 1312 GTTCTGAAAGGTGGAAGTATT-AGTTTTGAGAATGTACACTTTAGTTATCTACCGGAGAG 1370
|| ||||||||||||| ||| ||||| || ||||||||||| ||||| || || |||||
Sbjct 1443 GTACTGAAAGGTGGAAACATTGAGTTT-GAAAATGTACACTTCAGTTACCTTCCAGAGAG 1501
Query 1371 GAAGATTTTAGATGGGATTTCATTTGAGGTACCGGCGGGGAAAAGTGTGGCGATTGTTGG 1430
|| || |||||||| ||||| |||| |||||||| || ||||||||||| || |||||
Sbjct 1502 AAAAATATTAGATGGAATTTCCTTTGTCGTACCGGCAGGAAAAAGTGTGGCAATCGTTGG 1561
Query 1431 TAGTAGCGGAAGCGGAAAATCGACGATTCTTAGAATGATATTTAGATTCTTTGACACAGA 1490
|| |||||| ||||| || || || |||||||| ||| |||| |||||||| ||||||||
Sbjct 1562 TACTAGCGGGAGCGGCAAGTCAACAATTCTTAGGATGCTATTCAGATTCTTCGACACAGA 1621
Query 1491 TTCCGGAAATGTAAAGATTGATGGTCAGGATATAAAGGAAGTGAGATTAGAGAGTCTTCG 1550
|||||||||| ||| |||||| || || |||||||||||||||||| |||| || || ||
Sbjct 1622 TTCCGGAAATATAAGGATTGACGGGCAAGATATAAAGGAAGTGAGACTAGATAGCCTCCG 1681
Query 1551 AAGCTCCATTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAATGACACAATATTTCACAA 1610
||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1682 AAGCTCCATAGGAGTTGTGCCGCAAGATACTGTTCTCTTCAATGACACAATATTTCACAA 1741
Query 1611 CATTCACTATGGAAATCTTTCAGCAACAGAGGAAGAGGTGTACGAAGCAGCTCGGCGAGC 1670
||| || |||||| ||| ||||| ||||| ||||||||||| || || |||||||| ||
Sbjct 1742 CATACATTATGGACGTCTCTCAGCTACAGAAGAAGAGGTGTATGAGGCTGCTCGGCGTGC 1801
Query 1671 AGCGATTCACGATACGATCATGAAATT-CCCGGATAAATATAGGACCG--CGGTGGGAGA 1727
|| ||||| || || |||| | |||| ||| ||||||||| || | || |||| ||
Sbjct 1802 TGCAATTCATGAAACAATCA-GTAATTTCCCTGATAAATATTCCAC-GATCGTTGGG-GA 1858
Query 1728 AAGAGGGTTGATGCTGAGTGGTGGAGAGAAACAAAGAGTGGCACTGGCTCGTGCC-TTTC 1786
||| ||| | | | ||||||||||||||||||||||||||||||| ||||| | | |||
Sbjct 1859 AAGGGGGCTCAAGTTGAGTGGTGGAGAGAAACAAAGAGTGGCACTTGCTCG-GACATTTT 1917
Query 1787 TGAAATCACCTGCAATCCTGTTGTGTGACGAAGCAACGAGTGCGCTTGACAGTAAAACAG 1846
||||||| ||||| || ||||||||||| || |||||||||||||| ||||| | |||||
Sbjct 1918 TGAAATCCCCTGCGATTCTGTTGTGTGATGAGGCAACGAGTGCGCTGGACAGCACAACAG 1977
Query 1847 AGGCAGAGATAATGAAAACGCTCA-GATCGTTAGCGAGTAACAGAACTTGCG-TCTTCAT 1904
||||||||||| |||| | |||| | | ||||||||||||| || | | |||||||
Sbjct 1978 AGGCAGAGATACTGAACGCACTCAAGG-CACTAGCGAGTAACAGGACAT-CTATCTTCAT 2035
Query 1905 TGCACATAGGCTGACCACTGCGATGCAATGTGATGAAATAATAGTAATGGAGAAA-GGGA 1963
||| || |||||||||||||||||||||||||| || || ||||| |||| ||| ||||
Sbjct 2036 TGCCCACAGGCTGACCACTGCGATGCAATGTGACGAGATCGTAGTACTGGA-AAACGGGA 2094
Query 1964 AAGTAGTGGAAAAAGGGACACACCAAGTGTTGTTGGGGAAATCTGGGAGATACGC-CAAT 2022
| || |||||| |||| | ||| | | | | ||||| ||||| |||||||| || ||
Sbjct 2095 AGGTGGTGGAACAAGGCCCCCACGACGAGCTATTGGGAAAATCAGGGAGATATGCGCAGC 2154
Query 2023 TTGTGGACACAACAAAACAG 2042
| |||||||||||||||||
Sbjct 2155 TA-TGGACACAACAAAACAG 2173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104467334145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5