BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491902
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28610.1 | Symbols: PHR1, AtPHR1 | phosphate starvation resp... 2137 0.0
> AT4G28610.1 | Symbols: PHR1, AtPHR1 | phosphate starvation response
1 | chr4:14132856-14135259 REVERSE LENGTH=1693
Length=1693
Score = 2137 bits (1157), Expect = 0.0
Identities = 1443/1571 (92%), Gaps = 59/1571 (4%)
Strand=Plus/Plus
Query 1 AGGACAGCAATGGAGGCTCGTCCGGTACAGAGATCAGGTTCGAGAGAGCTCAGTAGTAAC 60
|||||| |||||||||||||||| || || ||||||||||| | || || ||
Sbjct 147 AGGACAACAATGGAGGCTCGTCCAGTTCATAGATCAGGTTC------G---AG-AG--AC 194
Query 61 CTCGCACGCACTTCTTCAATCCCATCTACACAAAAACCTTCAGCAGCAGAAGATAGTTTT 120
||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 195 CTCACACGCACTTCTTCAATCCCATCTACACAAAAACCTTCACCAGTAGAAGATAGTTTC 254
Query 121 ATCAGACCAGAGAACAACACTCAGTTAATGTCGAG-GCAGTTAGGACAATCCTACCATTT 179
|| ||| |||| ||||||| |||||||||||| || || ||||||||| ||||||||||
Sbjct 255 ATGAGATCAGATAACAACAGTCAGTTAATGTCTAGACCA-TTAGGACAAACCTACCATTT 313
Query 180 ACTTTCCTCTAGTAACGGTGGAGCTGTTGGACATATATGTTCTTCTTCATCATCCGGTGG 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 314 ACTTTCATCTAGTAACGGTGGAGCTGTTGGACATATATGTTCTTCTTCATCAT-C--TGG 370
Query 240 TTTCTCG-AA-CAATCTCCATTACTCGACTATGGTATCTCATGAG--A-AGCAACATTAC 294
||| | | || ||||||||||||||| |||||||||||||||||| | | ||||| |||
Sbjct 371 TTT-T-GCAACCAATCTCCATTACTCAACTATGGTATCTCATGAGAAACAACAACACTAC 428
Query 295 GCAGGAAGCAGCAG---TCATGCTGCGCAGACACC--G-AGCAACGATAGTTCTTGGTGT 348
||||||||||||| | |||||| ||||||||| | | |||||||||| ||||||||
Sbjct 429 ACAGGAAGCAGCAGTAATAATGCTGTGCAGACACCAAGCAACAACGATAGTGCTTGGTGT 488
Query 349 CATGATTCATTGCCAGGAGGAGGGTTTCTTGATTTCCATGAAAACAACAACCCTGCCATT 408
|||||||||||||| ||||||||||||||| ||||||| |||| |||||| || |||
Sbjct 489 CATGATTCATTGCC---AGGAGGGTTTCTTGACTTCCATG-AAAC--CAACCCGGCGATT 542
Query 409 CAAAACAACAGTCAAATTGAGGATGGTGGCATTGCTGCTGCCTTTGATGACATTCAAAAA 468
||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 543 CAAAACAACTGTCAGATTGAGGATGGTGGCATTGCGGCTGCTTTTGATGACATTCAAAAA 602
Query 469 CGAAGTGATTGGCATGAATGGGCTGACCATTTGATCACCGATGAAGATCCTTTGATGTCT 528
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 603 CGAAGTGATTGGCATGAATGGGCTGACCATTTGATCACTGATGATGATCCTTTGATGTCT 662
Query 529 ACTAACTGGAATGATCTCTTGCTTGAAACAAGTTCCAATTCAGATTCAAAGGACCAGAA- 587
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 663 ACTAACTGGAATGATCTCTTGCTTGAAACAAATTCCAATTCAGATTCAAAGGACCAGAAG 722
Query 588 ATCACTGCAAATTCCGCAACCTCAGATTGTTCAGCAGCAACCTTCGCCGTCTGTGGAATT 647
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 723 A-CACTGCAAATTCCGCAACCTCAGATTGTTCAGCAGCAACCTTCTCCGTCTGTGGAATT 781
Query 648 GCGACCTGTTAGCACAACATCTTCAAACAGCAATAACGGAACGGGTAAGGCACGTATGCG 707
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 782 GCGACCTGTTAGCACAACATCTTCAAACAGCAATAACGGAACGGGCAAGGCACGAATGCG 841
Query 708 TTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAATAGTCTTGGTGGCAGTGA 767
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 842 TTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGA 901
Query 768 AAGAGCTACTCCTAAAGGCGTACTGAAGATTATGAAAGTTGAAGGCTTGACTATTTATCA 827
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 902 AAGAGCTACTCCTAAAGGGGTACTGAAGATTATGAAAGTTGAAGGCTTGACTATATATCA 961
Query 828 TGTCAAAAGCCATTTACAGAAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAAC 887
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TGTTAAAAGCCATTTACAGAAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAAC 1021
Query 888 TGGTTCGCCAGAGAA-GAAGTTGACACCGCTTGAACATATAACATCTCTTGATTTGAAAG 946
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGGTTCGCCAGA-AAGGAAGTTGACACCGCTTGAACATATAACATCTCTTGATTTGAAAG 1080
Query 947 GTGGGATAGGTATTACAGAGGCTCTGCGACTTCAGATGGAAGTACAGAAGCAACTCCATG 1006
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1081 GTGGGATAGGTATTACAGAGGCTCTACGACTTCAGATGGAAGTACAGAAGCAACTCCATG 1140
Query 1007 AGCAGCTCGAGATTCAAAGAAACCTGCAACTCCGAATAGAAGAACAAGGCAAGTACCTGC 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGCAGCTCGAGATTCAAAGAAACCTGCAACTCCGAATAGAAGAACAAGGCAAGTACCTGC 1200
Query 1067 AAATGATGTTCGAGAAACAAAACTC-GGATCTTGCCAAAGGGACAGCCTCGACATCAGAT 1125
|||||||||||||||| |||||||| || |||| |||||||||||||||| |||||||||
Sbjct 1201 AAATGATGTTCGAGAAGCAAAACTCTGG-TCTTACCAAAGGGACAGCCTCAACATCAGAT 1259
Query 1126 TCCGCAGCCAAATCTGAACAAGAAGACAAGAAAACTGCTGATACAAAGGAGCT-CGCATC 1184
|||||||||||||||||||||||||||||||| ||||||||| | |||||| | | ||
Sbjct 1260 TCCGCAGCCAAATCTGAACAAGAAGACAAGAAGACTGCTGATTCGAAGGAGGTTC-CAGA 1318
Query 1185 AGAAGAAACCAGGAAATGTGAGGAACCAGAATCTCCACAGCCAAAGCGTCCCAAAACCGA 1244
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1319 AGAAGAAACCAGGAAATGTGAGGAACTAGAATCTCCACAGCCAAAGCGTCCCAAAATCGA 1378
Query 1245 TAATTGAAAGAATTAGTGTTTTGCTGGATAATCTTGGAGTTTCAGAGTTTAACAGTgaga 1304
|||||||||| ||| || |||||||||||||||| |||||||||||||| |||||||| |
Sbjct 1379 TAATTGAAAGTATTGGTCTTTTGCTGGATAATCTCGGAGTTTCAGAGTT-AACAGTGATA 1437
Query 1305 gagagaga-gagCTCTTATCTTGAG---CTTCAGGACTTCTCTCGCTACTGTTTAACTAT 1360
|||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1438 GAGAGA-ACGAGCTCTTATCTTGAGGTTCTTCAGGACTTCTCTCTTTACTGTTTAACTAT 1496
Query 1361 TTTTCTGATGGAAGACTCTCTCAACTCAGCTGTGTAGACAAAACAACAGATCCCCGAGAA 1420
|||||||||||||||||||| |||||||||||||||||||| |||||||||||| || |
Sbjct 1497 TTTTCTGATGGAAGACTCTC--AACTCAGCTGTGTAGACAAA-CAACAGATCCCCAAGGA 1553
Query 1421 AGAAACAAAACAAAAATAAAGAGTTTAGTTTGGGAGAATCTTCATCATTCGAATGTAATC 1480
|||||||||||||||||||| |||| |||||||||||||||||||||||| | |||||||
Sbjct 1554 AGAAACAAAACAAAAATAAAAAGTT-AGTTTGGGAGAATCTTCATCATTC-AGTGTAATC 1611
Query 1481 TAAATGCTTAACTCAT--T-AGTTTTACCGATACAGATTTCTTATGTTAAATCTTTTTTA 1537
|||||||||||||||| | |||||||| | ||||||||||||||||||| |||||||||
Sbjct 1612 TAAATGCTTAACTCATCATTAGTTTTACAGCTACAGATTTCTTATGTTAA-TCTTTTTTA 1670
Query 1538 GAATATTAAAC 1548
|||||| ||||
Sbjct 1671 GAATATCAAAC 1681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5