BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491904
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28590.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1565 0.0
> AT4G28590.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING:
10 growth stages; BEST Arabidopsis thaliana protein match
is: Thioredoxin superfamily protein (TAIR:AT2G31840.1);
Has 114 Blast hits to 112 proteins in 39 species: Archae - 2;
Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses
- 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr4:14125229-14126835
REVERSE LENGTH=1141
Length=1141
Score = 1565 bits (847), Expect = 0.0
Identities = 1000/1071 (93%), Gaps = 22/1071 (2%)
Strand=Plus/Plus
Query 1 GAGAGAAATGAGTTTCTTCCCTGCTGCTTGCTCTGCGCCAAGATCTTCCATGCTTCTCAC 60
||||||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||
Sbjct 1 GAGAGAAATGAGTTTCTTCGCTGTTGCTTGCTCCGCGCCAAGATCTTCTATGCTTCTCAC 60
Query 61 CGGCTTGAATTCGAGCTTCTCCGATGTGCATCGCAGTCCACTATCGGTTTTTCC-GTCGA 119
||||||||||||||||||||| ||| |||||||||| ||||||| ||||| || || ||
Sbjct 61 CGGCTTGAATTCGAGCTTCTCTGATATGCATCGCAGCCCACTATTTGTTTTCCCGGT-GA 119
Query 120 GTATATCATCCCGGAGCGGGAAATCTCCGGTATGCCTCGCCGCTGTTTCGTCTGATTCCG 179
||||||||||||||||| |||| | || ||||||||||||||||||||||||
Sbjct 120 CTATATCATCCCGGAGCGTGAAA----C-----GCTTCGCCGCTGTTTCGTCTGATTCCG 170
Query 180 TACCCGACGAACCTGGATCCAAAAATCAAACTCGGTCCCGTCGCCAAAAGAAGGAAGTTG 239
|| | | || |||| |||||||||||||||||||||||||||| |||| ||||||| |
Sbjct 171 TA--CTA-GACCCTGAATCCAAAAATCAAACTCGGTCCCGTCGCAAAAATAAGGAAGCAG 227
Query 240 TCGCACCGATTGCTGAAACCGAGAACAATGACAAGTTTCCGACGAAGGTCCGGCGTAAAT 299
| | || ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 228 TTACGCCAATTGCTGAAACCGAGAACAATGAAAAGTTTCCGACAAAGGTCCCGCGTAAAT 287
Query 300 CGAAGCGCGGGCGGCGGAGCGAAGCAGACGCCGTGGAAGATTACGTGAGAAGCTCCCTCG 359
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 288 CGAAGCGTGGGCGGCGGAGTGAAGCAGACGCTGTGGAAGATTACGTGAGAAGCTCCCTCG 347
Query 360 AGAAAACTTTCTCCACCAT-AAGAGAGCAGAATCCGGAGGTTTTTGAGAACAAAGAGAAG 418
|| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 348 AGCGTACTTTCTCCACCATAAAG-GAGCAGAATCCGGAGGTTTTTGAGAACAAGGAGAAG 406
Query 419 GCGAATTTCATCAAAGACAGAGGCGTTGATgaagaggaagaagaagaagaagaagagatg 478
||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||
Sbjct 407 GCGAATTTCATCAAAGACAGAGGCGTTGATG-A-A-GAAGAGGAAGAAGAAGAAGAGATG 463
Query 479 gtggtggaagaggaagaTCCAGATTGGCCAGTAGATACAGACGTTGGATGGGGAATCAAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GTGGTGGAAGAGGAAGATCCAGATTGGCCAGTAGATACAGACGTTGGATGGGGAATCAAA 523
Query 539 GCTTCGGAGTATTTCGATACACATCCAATCAAAAACGTGGTTGGAGAAGATGGGACTGAG 598
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 524 GCTTCGGAGTATTTCGATACACATCCAATCAAAAACGTGGTTGGAGATGATGGGAGTGAG 583
Query 599 ATTGATTGGGAAGGTGAGATTGATGATAGTTGGGTCAAGGAGATCAATTGTTTGGAATGG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 ATTGATTGGGAAGGTGAGATTGATGATAGTTGGGTCAAGGAGATCAATTGTTTGGAATGG 643
Query 659 GAAAGCTTTGCTTTTCATCCTAGTCCACTCGTTGTCCTCGTATTCGAGCGATACAAAAGG 718
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 644 GAAAGCTTTGCTTTTCATCCTAGTCCACTCGTTGTCCTTGTATTCGAGCGATACAAAAGA 703
Query 719 GCTAGTGATAACTGGAAGACATTGAAGGAGCTTGAGAAAGCTATCAAAGTTTATTGGGAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GCTAGTGATAACTGGAAGACATTGAAGGAGCTTGAGAAAGCTATCAAAGTTTATTGGGAT 763
Query 779 GCAAAAGATCGATTACCTCCACGGGCGGTTAAGATTGACCTGAACATCGAGACAGATTTG 838
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GCGAAAGATCGATTACCTCCACGGGCGGTTAAGATTGACCTGAACATCGAGACAGATTTG 823
Query 839 GCATATGCTCTTAAAGCTAAGGCATGCCCACAGATTCTCTTCTTACGCGGAAACCGGATT 898
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 824 GCATATGCTCTTAAAGCTAAGGAATGCCCACAGATTCTCTTCTTACGCGGAAACCGGATT 883
Query 899 CTGTATAGGGAGAAAGACTTTCGCACAGCGGATGAATTGGTTCATATGATTGCGCATTTC 958
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 884 CTGTACAGGGAGAAAGACTTTCGCACGGCGGATGAATTGGTTCATATGATTGCGCATTTC 943
Query 959 TACTATAAAGCGAAGAGACCTTCGTGGGTTGACAAGGCTAATGTAACCCCGTACTGTTAG 1018
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 944 TACTATAAAGCGAAGAGGCCTTCGTGTGTCGACAAGGCTAATGTAACCCCGTACTGTTAG 1003
Query 1019 TTTGCAGCGGGAACAGAGAGTAGTTTCACTCAAA-GGTCAGTCTAGGAAAA 1068
|||| | |||| || |||||||||||||||||| ||||||||||||||||
Sbjct 1004 TTTGTAACGGG--CATAGAGTAGTTTCACTCAAAAGGTCAGTCTAGGAAAA 1052
Score = 91.6 bits (49), Expect = 1e-17
Identities = 59/63 (94%), Gaps = 3/63 (5%)
Strand=Plus/Plus
Query 1067 AACATTTTTGTATGTTCTATGCAAATATAAAGTTGGTTCCCAAGTAATG-ATTTTTACTC 1125
||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||
Sbjct 1081 AACATTTTTGTATGTTCTATGCAAATATAAACTTG-TTCCCAAGTAATGGATTTT-ACTC 1138
Query 1126 GTC 1128
|||
Sbjct 1139 GTC 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5