BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491905
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28580.1 | Symbols: ATMGT5, MGT5, MRS2-6 | magnesium transpo... 1770 0.0
> AT4G28580.1 | Symbols: ATMGT5, MGT5, MRS2-6 | magnesium transport
5 | chr4:14123489-14125052 FORWARD LENGTH=1276
Length=1276
Score = 1770 bits (958), Expect = 0.0
Identities = 1183/1285 (92%), Gaps = 42/1285 (3%)
Strand=Plus/Plus
Query 1 ATGGGATCACTTCGCCGTAGTACGAGCAACCGCCA-CCGGAAGAAGGGTACGGCGGTGAA 59
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGGATCACTTCGCCGTAGTACGAGCAACCG-CAGCCGGAAGAAGGGTACGGCGGTGAA 59
Query 60 GATGACTAGGACGCCTTCATCTCTACCGCCTCCTCCGCCTCTTCCGCC-TATCAATGCAA 118
||||| ||||| ||||||||||||| |||||||| | |||||| | | | |||||
Sbjct 60 GATGAATAGGATGCCTTCATCTCTATCGCCTCCT-----AC-TCCGCCTTGT-AGTGCAA 112
Query 119 TCGTGGGAGGGACGGGGAAGTCGAAGAAGAGAAGGGGAGGAGTCTGTCTATGGACGAGGT 178
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 113 TCGTGGGAGGGACGGGGAAGTCAAAGAAGAGAAGAGGAGGAGTCTGTCTATGGACGAGGT 172
Query 179 TTGATCGGACTGGATTCATGGAAGTGGTTGGATGTGACAAGAGCACCATCATCGAACGTT 238
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 173 TTGATCGGACTGGATTCATGGAAGTGGCTGGATGTGACAAGAGCACCATCATCGAACGTT 232
Query 239 CTTCTGTTTCGGCTAAGGATTTAAGAACTGGTTTCTCTCACTCTTCTAAAATTCTAGCCA 298
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 233 CTTCTGTTTCGGCTAAGGATTTAAGAACTGCCTTCTCGCACTCTTCTAAAATTCTAGCCA 292
Query 299 GAGAGAAAGCTATTGTCCTGAATTTAGAGGTCATAAAGGCGGTAATTACTTCAGAAGAAG 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 293 GAGAGAAAGCTATTGTCCTGAATTTAGAGGTCATAAAGGCGGTAATTACTTCAGAACAAG 352
Query 359 TTATGTTGTTGGATTCTCTCCGTCCTGAAGTTCTTACACTCACTAACCGACTAAAGCATC 418
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 353 TTATGTTGTTGGATTCTCTCCGTCCTGAAGTTCTTACACTCACTGACCGACTAAAGCATC 412
Query 419 ACTTTCCTCGGAAGGATGGTCCTGAAA-T-TGCT-C---CTTCT-CT--TGGTGATCAAG 469
||||||||||||||||||||||||||| | | | | ||||| || |||| ||||||
Sbjct 413 ACTTTCCTCGGAAGGATGGTCCTGAAAATATATTGCAAGCTTCTTCTCATGGTCATCAAG 472
Query 470 AAGGTGGAGAAGAGGGCTTGGAGAATAAGCTTCCTTTTGAATTTCAGGTACTAGAGATTG 529
|||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 473 AAGGTGGAGAAGAGGGTTTGAAGAGTAAGCTTCCTTTTGAATTTCGGGTACTAGAGATTG 532
Query 530 CACTCGAGGTCGTCTGCTCATTTGTTGATAGCAATGTGGTAGACCTTGAGACACAAGCTT 589
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CATTCGAGGTCTTCTGCTCATTTGTTGATAGCAATGTGGTAGACCTTGAGACACAAGCTT 592
Query 590 GGTCTATTCTTGATGAACTAACCAAGAAGGTCACCAATGAGAATCTTAAAGACCTACGAA 649
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 593 GGTCTATTCTTGATGAACTAACCAAGAAAGTCAGCAATGAGAATCTTAAAGACCTAAGAA 652
Query 650 GTTTAAAAAGTAGTCTCACC-ATCTTGCTAGCCCGTGTACAAAAGGTGAGAGATGAAATC 708
||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 653 GTTTAAAAACTAGTCTCACCCA-CTTGCTAGCCCGTGTACAAAAGGTGAGAGATGAAATC 711
Query 709 GAACATTTCTTAGATGACAAGGAAGACATGGAAGACTTACACTTAACAAGGAAATGTATT 768
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||
Sbjct 712 GAACATTTCTTAGATGACAAGGAAGACATGGAAGACTTATACTTAACGAGGAAATGGATT 771
Query 769 CAAAACCAACAAACCGAGGCACCATCAAATAGCATTGTC-CCC--C-AA-TC---AA--- 817
||||||||||||||||||||| ||||||||||||||||| ||| | || || ||
Sbjct 772 CAAAACCAACAAACCGAGGCAGCATCAAATAGCATTGTCTCCCAACCAAATCTTCAACGG 831
Query 818 -A-AGA--AA---GAA---GCGCCAGTATGGTGACGGAGGAAGATGACGTTGATGATTTG 867
| | | || ||| || |||||||||||||||||||||||||| |||||||| ||
Sbjct 832 CACACATCAAACAGAATAAGCACCAGTATGGTGACGGAGGAAGATGACATTGATGATATG 891
Query 868 GAGATGTTGCTTGAGGCATACTTCATGCAACTAGAGGGAATGCAGAACAAAATTCTTATG 927
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 892 GAGATGTTGCTTGAGGCATACTTCATGCAACTAGAGGGAATGCGGAACAAAATTCTTTTG 951
Query 928 ATGAAGGAGCACATTGATGGCGCAGAAGCATACGTGAAGATACTACAGAATAGTAGACGT 987
||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 952 ATGAAGGAGCATATTGACAGCACAGAAGCCTACGTGAAGATACTACAGAATAGTAGACGT 1011
Query 988 AACGGACTGTTCCACCTAATGATGGTGGTGAATATAGCCAATTATGCAATAACAGCAGGG 1047
||||||||| |||||||||||||| | |||||||||| ||||||||||||||| ||||||
Sbjct 1012 AACGGACTGATCCACCTAATGATGCTTGTGAATATAGGCAATTATGCAATAACTGCAGGG 1071
Query 1048 ACAGTGGTGGTCAACTTGTTCGGTATGAACATACAAATTGGATTGTATAGCACACCTGAC 1107
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1072 ACAGTGGTGGTCAACTTGTTCGGTATGAATATACCAATTGGATTGTATAGCACACCTGAC 1131
Query 1108 ATCTTTGGTTACGTGGTGTGGGCTGTTGTTGCGCTTTGCATTGTGCTTTTCATGGTCACC 1167
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1132 ATCTTTGGTTACGTTGTGTGGGCTGTCGTTGCGCTTTGCATTGTGCTTTTCATAGTCACC 1191
Query 1168 CTTGGTTACGCCAAGCGTAAGAAGCTGCTTGACTGATCAGAGACTAAACACATTAGGTTT 1227
|||||||||||||| | |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1192 GTTGGTTACGCCAAGTGGAAGAAGCTACTTGACTGATAAGAGACTAAACACATTAGGTTT 1251
Query 1228 AGTCTTTATAAGATTAGGTTTGTGG 1252
|||| |||| ||||||| |||||||
Sbjct 1252 AGTCATTATGAGATTAGCTTTGTGG 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61545868170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5