BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491906
Length=2499
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28570.1 | Symbols: | Long-chain fatty alcohol dehydrogenas... 3688 0.0
> AT4G28570.1 | Symbols: | Long-chain fatty alcohol dehydrogenase
family protein | chr4:14119425-14122616 FORWARD LENGTH=2747
Length=2747
Score = 3688 bits (1997), Expect = 0.0
Identities = 2340/2505 (93%), Gaps = 26/2505 (1%)
Strand=Plus/Plus
Query 5 AGACTTGTCTGAATCTTCAATAAGCTCACGGATTTCTCCTCAAAATCCTGATCCAATCAT 64
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 24 AGACTTGTCTGATTCTTCAATAAGCTCACGGATTTCTCCTCAAAATCCTAATCCAATCAT 83
Query 65 TAGTCCAATTCTCCAACTAG-TTGGTAATAGACAAATAACATGgaagaagatagaagaag 123
| ||||||||||||| || ||||||||| ||||||||||||||||| | |||||||||
Sbjct 84 TTCTCCAATTCTCCAAGGAGTTTGGTAATACACAAATAACATGGAAGACGTTAGAAGAAG 143
Query 124 aaacagaggacatcctctgttgagatccaagaagagagaagaCGGCTACAACCATGGCTT 183
||||||||||||||||||| | |||||||||||||||| ||| |||||||||||||||||
Sbjct 144 AAACAGAGGACATCCTCTGCTCAGATCCAAGAAGAGAGGAGAAGGCTACAACCATGGCTT 203
Query 184 CTCACCGTCTCAGATTCAATCTCTCGCCGTCATCTGTCAAACTCTCCTCCCTCCGGAGAC 243
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 204 CTCACCGTCTCAGATTCAATCTCTTGCCGTCATCTGTCAAACTTTCCTCCCTCCGGAGAC 263
Query 244 CACGGCAGAGCAGCAAGCTCTGAATTCCTTTAACGTAGCCTCCTCTACTCTACCACCATT 303
|||| | || ||||||||| | |||||||| |||||||||||||||||| |||||||||
Sbjct 264 CACGTCGGAACAGCAAGCTGTTAATTCCTTCCACGTAGCCTCCTCTACTCAACCACCATT 323
Query 304 CACTGATGAGGTGGCGGAGATGATAGTGAAAAACGGACGACCAGAAGCAGTCAAGGTTTT 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 324 CACTGATGAGGTGGCGGAGATGATAGTGAAAAACGGACGATCAGAAGCAGTCAAAGTTTT 383
Query 364 GAAAATCATATTGATGATTTTGTCATTCAGATTTGGAACTTTGTTGCTTTGTGGGTCTCT 423
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 GAGAATCATATTGATGATTTTGTCATTCAGATTTGGAACTTTGTTGCTTTGTGGGTCTCT 443
Query 424 CTGTCTTGATAAGAGTTGGCCTTTTGTTCTTAAATTCTCTCAACTTCCATTGGTTAAAAG 483
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 444 CTGTCTTGATAAGAGTTGGCCTTTTGTTCTTAAATTCTCTCAACTTCCATTGGATAAAAG 503
Query 484 AGAAGAGATCTTGAGGAAAT-GGTCTAGACAGAGTGGATTCCTTCTTCCATTTCGAATCA 542
||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct 504 AGAAGCGATCTTGAG-AAATTGGTCTAGACAAAGTGGATTCCTTCTTCCATTTCGTATCA 562
Query 543 CTTTCTTCCTTGCAAAATTCTATACCCTCTTCTACTTCTTTTCCCAGACGGATGAGAATC 602
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 563 CTTTCTTCCTTGCAAAATTCTACACCCTCTTCTACTTCTTCTCCCAGACGGATGAGAATC 622
Query 603 TGAAGAATCCTGCATTGGAAACTATAGGGTATTGCCTCGATGGGATAGAAACATGTAGCA 662
|||||||||||||| ||||| |||||||||||||| ||||||||| ||| | | ||||||
Sbjct 623 TGAAGAATCCTGCACTGGAAGCTATAGGGTATTGCATCGATGGGACAGAGAGAAGTAGCA 682
Query 663 ACAAGAAGAGTGAAGCAGATGAGA-GACGGCGACCTCTAGAGACAGGGATCATTGAGACT 721
|||||||||||||||||||||||| | || ||||||||||||| |||||||||||| |||
Sbjct 683 ACAAGAAGAGTGAAGCAGATGAGAAG-CGACGACCTCTAGAGAAAGGGATCATTGAAACT 741
Query 722 AGGCATGAGCGTGACATAACCATCACACAATCTCTAATTGGAAAAGGTGTTCATGTTGCG 781
| ||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 742 ATGCATGAGAGTGACGTAACCATCACACAATCTCTAACTGAAAAAGGTGTTCATGTTGCT 801
Query 782 AGAGACGATGGTGACAATGTGCATAGGATCAGATGCGATGCGGTTATTGTAGGCTCAGGA 841
||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct 802 AGAGACGATGGTGACAATGTGTACAGGATCAGATGCGATGCGGTTGTTGTAGGCTCAGGA 861
Query 842 AGCGGAGGAGGTGTTGCAGCTGCAAACCTAGCTAAAGCTGGATTCAAAGTCTTGGTTCTT 901
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 862 AGTGGAGGAGGTGTTGCAGCTGCAAACCTAGCTAAAGCTGGATTGAAAGTCTTGGTTCTA 921
Query 902 GAGAAAGGAAATTACTTTGCACCTCAGGATTATTCGGGTCTAGAAGGTCCGTCTATGCTC 961
||||||||||| |||||| || |||| || |||||||||||||||| |||||||||||||
Sbjct 922 GAGAAAGGAAACTACTTTACAGCTCATGACTATTCGGGTCTAGAAGTTCCGTCTATGCTC 981
Query 962 GAACTATACGAAAAAAGCGGGCTTTTGACGACGGTTGATGGGAAATTTATGCTCTTGGCT 1021
|| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 982 GAGTTATACGAAAAAGGCGGCCTTTTGACTACGGTTGATGGGAAATTTATGCTCTTGGCT 1041
Query 1022 GGTTC-GACTGTGGGAGGAGGTACAGCGGTTAATTGGTCTGCATCTATAAGGACGCCGGA 1080
||||| | |||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1042 GGTTCAG-CTGTTGGAGGAGGTACAGCTGTTAATTGGTCTGCATCTATAAGGACACCGGA 1100
Query 1081 TCATGTTTTGCAGGAATGGTCTGAAGGGAGTAAGATTAAGTTTTTCGGTAGCCAAGAATA 1140
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1101 TCATGTTTTGCAGGAATGGTCTGAAGGGAGTAAGATCAAGTTTTTTGGTAGCCAAGAATA 1160
Query 1141 CCAGTCTGCAATGGATGAAGTTACGAAAAGGATCGGTGTCACGGAAAGATGTGTCAAAGA 1200
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 1161 TCAGTCTGCAATGGATGAAGTTACGATAAGGATTGGTGTCACGGAAAGATGTGTCAAACA 1220
Query 1201 CGGGTTTCAAAACCAGGTTCTGCGGAAAGGGTGCGAGAGACTCGGTTTGCAGGTAGAGTC 1260
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1221 CGGGTTTCAGAATCAGGTTCTGCGGAAAGGGTGCGAGAGACTCGGTTTGCAGGTAGAATC 1280
Query 1261 AGTTCCAAGGAACTCACCAGAAGATCATTATTGCGGCTTGTGCGGGTATGGATGTAGAGC 1320
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1281 AGTTCCAAGGAACTCACCAGAGGATCATTACTGTGGCTTGTGCGGGTATGGATGTAGAGC 1340
Query 1321 AGGAGCCAAGAACGGGACAGACCGAACCTGGCTGGTTGATGCTGTAGAGAACGGTGCAGT 1380
||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||
Sbjct 1341 AGGAGCCAAGAACGGGACAGATCAAACCTGGTTGGTTGATGCTGTAGAGAATGGTGCAGT 1400
Query 1381 GATCCTAACAGGGATCAAAGCTGAGAGATTTGTATTAGTAGACAACACTAGCAGTAGCAA 1440
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1401 GATCCTGACAGGGATCAAAGCTGAGAGATTTGTATTAGTAGACAACACTAGTAGTAGCAA 1460
Query 1441 TGAGAGAAAGAAACGATGTGTGGGAGTGATTGCGAGTTCTGTTGGAGGAAAGATTGGGAA 1500
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 1461 TGAGAGAAAGAAACGATGTGTGGGAGTGTTTGCTAGCTCTGTTGGAGGAAAGATTGGGAA 1520
Query 1501 GAAATTTATTATCGAAGCTCGAGTGACGGTTTCATCCGCTGGATCGCTGTTAACACCGCC 1560
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1521 GAAGTTTATTATCGAAGCTCGAGTAACGGTTTCATCCGCTGGATCGCTGTTAACACCGCC 1580
Query 1561 TCTGATGCTTTCGAGTGGGCTAAAGAACCCGCACATTGGGAGGAACTTAAAGCTGCACCC 1620
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1581 TCTGATGCTTTCGAGTGGGCTAAAGAACCCGAACATTGGAAGGAACTTAAAGCTGCACCC 1640
Query 1621 GGTTCTGATGACATGGGGATACTTCCCGGAGAAAGATTCTGAGTTCTCCGGGAAAATGTA 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1641 GGTTCTGATGACATGGGGATACTTCCCGGAGAAAGATTCTGAGTTCTCCGGGAAAATGTA 1700
Query 1681 CGAGGGAGGGATCATCACGTCCGTCCATCACATGAATGATGCTGAATCAGGATGCAGAA- 1739
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||
Sbjct 1701 TGAGGGAGGGATCATCACGTCCGTCCATCATATGAATGATACTGAATCTGGATGCA-AAG 1759
Query 1740 CAATACTGGAGAATCCACTGATAGGACCAGCTTCGTATGCGGGGTTGAGCCCGTGGGTTT 1799
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 1760 CAATACTGGAGAATCCACTGATAGGACCAGCTTCTTACGCAGGGTTGAGCCCGTGGGTTT 1819
Query 1800 CAGGAGCAGACCTTAAGGAGCGGATGATTAAGTACGGAAGAACAGCTCATGTGTTTGCTC 1859
||||| |||||||||| ||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 1820 CAGGACCAGACCTTAAAGAGAGGATGATTAAGTACGGAAGAACAGCTCATCTTTTTGCTC 1879
Query 1860 TGGTTCGGGACATCGGGTCAGGTGAGGTCATGAAAGAAAGCGAAGTTACATACAGGACAA 1919
||||||||||| | |||||||||||||| |||| |||| ||||||||||||||||||||
Sbjct 1880 TGGTTCGGGACTTAGGGTCAGGTGAGGTTATGATGGAAAACGAAGTTACATACAGGACAA 1939
Query 1920 CCAAGAAAGATAGAGAGAATCTGAGGGCAGGTCTTCGACAAGCTTTGCGGGTTTCGGTTG 1979
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1940 CCAAGAAAGATAGAGAGAATCTGAGGGCAGGTCTTAGACAAGCTTTGCGGGTTTCGGTTG 1999
Query 1980 CAGCAGGCGCAGTTGAAGTTGGGACATATAGGAGTGATGGACAGA-GAATGAAGTGTGAG 2038
|||| || ||||||||||| || |||||||||||||||||||||| || |||||||||||
Sbjct 2000 CAGCTGGTGCAGTTGAAGTCGGAACATATAGGAGTGATGGACAGAAGA-TGAAGTGTGAG 2058
Query 2039 GGAATTACTAAAGAAGCCATGGAAGAGTTTCTAGACGAAGTTGATGCGGTTGGTGGGGTT 2098
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2059 GCAATTACTAAAGAAGCCATGGAAGAGTTTCTAGACGAAGTTGATGCTGTTGGTGGGGTT 2118
Query 2099 AGCACAAAAGGAGAGTATTGGACGACATACTTCTCGGCTCACCAGATGGGTAGTTGTAGG 2158
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2119 GGCACAAAAGGAGAGTATTGGACGACGTACTTCTCGGCTCACCAGATGGGTAGTTGTAGG 2178
Query 2159 ATGGGAGCCAACGCGGAGGAAGGTGCGTTGGATGAGAATGGTGAGAGCTGGGAAGCAGAG 2218
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 ATGGGAGTCACCGCGGAGGAAGGTGCGTTGGATGAGAATGGTGAGAGCTGGGAAGCAGAG 2238
Query 2219 GGATTGTTTGTCTGTGATGGAAGTGTATTGCCTTCAGCTGTTGGGGTAAACCCAATGATC 2278
|| |||||||| |||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 2239 GGGTTGTTTGTTTGTGATGGAAGTATATTGCCATCAGCTGTTGGGGTTAACCCAATGATC 2298
Query 2279 ACCATTCAGTCTACCGCTTACTGCATTTCCTCAAAGATAGTTGACTCGCTCCaaaacaaa 2338
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2299 ACCATTCAGTCTACTGCTTACTGCATCTCCTCAAAGATAGTTGACTCGCTGCAAAACAAA 2358
Query 2339 agaaaagtatagagaagtaaaaa--gaaagaaCTCAAACCATCCCATTAGTATTCATGTC 2396
| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 2359 ACAAAAGTATAGAGAAGTAAAAAAAGAAAGAACTGAAACCATCCCATTAGTATTCATATC 2418
Query 2397 GAAATAAATAAT-TTTTTCCTTGTAAGACAGATTTTGTT-ATGAATCATGGAATAGTACT 2454
||| |||||| | |||||||||| |||||| |||||||| | ||||||||||||| |||
Sbjct 2419 GAA-TAAATA-TGTTTTTCCTTGCAAGACAAATTTTGTTTAAGAATCATGGAATA--ACT 2474
Query 2455 TCAGCATTATCTTGACCACAATAAAGATGTAAGCAAATGATATAT 2499
| | | |||||| |||| |||||||||| ||||||||||||
Sbjct 2475 T-A---T---CTTGACGACAACAAAGATGTAAACAAATGATATAT 2512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124012683096
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5