BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491907
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28560.1 | Symbols: RIC7 | ROP-interactive CRIB motif-contai... 1912 0.0
> AT4G28560.1 | Symbols: RIC7 | ROP-interactive CRIB motif-containing
protein 7 | chr4:14116015-14117367 REVERSE LENGTH=1353
Length=1353
Score = 1912 bits (1035), Expect = 0.0
Identities = 1260/1368 (92%), Gaps = 18/1368 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTCACGTACCAACCTCTTTCTTCTCCTCCTCCTCTTTCTCTTTACTGCTACA 60
|||||||||| ||| |||||| || ||| ||||||||||||||||| || ||||||
Sbjct 1 ATGGCGTCTT---TTACTAACCTC--TC-TCTTCTCCTCCTCTTTCTCTTCACCGCTACA 54
Query 61 CTCATCACCAGCCAGCAAAacgacgacgacgacgacgCTTCACCTCAACTCGCTCTAGAC 120
|||||||||||||| |||| |||||||||||| | || ||||| |||||||||||||||
Sbjct 55 CTCATCACCAGCCAACAAAGCGACGACGACGAAAATGCGTCACCACAACTCGCTCTAGAC 114
Query 121 CCGTCGGAGCAAGAAGCGGTTTACCGAGTTCTTGACTCAGTCAACTCAGCCATCTCATGG 180
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 115 CCGTCGGAGCAAGAAGCGGTCTACCGAGTTCTCGACTCAGTCAACTCAGCCATCTCATGG 174
Query 181 CGAACCATCTTCCCCGACGACCTCTGCGCTTCAACACCAGACGGCGTCGTTTGCGATTAC 240
||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||
Sbjct 175 CGAACCATCTTCCCCGACGACATCTGCGCTTCACCACCTGACGGCGTCGTTTGCGATAAC 234
Query 241 CTCTACGCTTCTCAAAACGGCGTCGCGACGTCTGTTCACGTCACCGAGTTCCATTTAGGC 300
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 235 CTCTACGCTTCTCAAAACGGCGTCGCAACGTCTGTTCACGTCACGGAGTTCCATTTAGGC 294
Query 301 TACCTCTCGGATTACACTCAAAACCCTCCTTGCTCTTCAAATGCTACGCTTGATCCTCTC 360
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 295 TACCTCTCGGATTACACTCAAAACCCTCCTTGCTCTTCTAATGCCACGCTTGATCCTCTC 354
Query 361 CTCTTTACTGCATTCAAACACCTTCGTAAGCTTTTCTTCTACAAATGCTTCACCGGA-GC 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 355 CTCTTTACTGCTTTCAAACACCTTCGTAAGCTTTTCTTCTACAAATGCTTCACCG-ACGC 413
Query 420 TCGTGTCCCC-TTGCCGGAAACAGTCCCGGAGGATTTCGGTTCTGTTCTTGAAGAGTTGG 478
||||| || | |||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 414 TCGTG-CCTCGTTGCCGTTAACAGTCCCGGAGGATTTCGGCTCTGTTCTCGAAGAGTTGG 472
Query 479 TGTTTATCGAGAACCCGTCTCTCTTCGGCGAGATCGGAGCCATGATCGGTAATTTCACAA 538
|||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 473 TGTTCATCGAAAACCCATCTCTCGTCGGCGAGATCGGAGCCATGATCGGTAATTTCACAA 532
Query 539 AGCTGAGAAGATTGGTTCTTACTGGAAACGGGTTTCACGGGTCGATTCCGGGTCAAATCG 598
||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 533 AGCTGAGAAGATTAGTTCTTACCGGTAACGGGTTTCACGGGTCAATTCCGGGTCAAATCG 592
Query 599 GAGATTTGGTTAGTATAGAAGAGATTACGCTCTCTAGAAACAGCTTGAGCGGTGGTTTTC 658
| |||||||| ||| |||| |||||||| ||||| ||||||||||||| |||||| ||||
Sbjct 593 GCGATTTGGTGAGTCTAGAGGAGATTACACTCTCCAGAAACAGCTTGACCGGTGGGTTTC 652
Query 659 CGGCGAACGCAACGTCTAGTCTGAAAAATCTAAAAGTTCTAGACTTTAGCCATAATTTTC 718
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 653 CGGCGAACGCAACGTCTCGTCTGAAGAATCTAAAAGTTCTAGACTTTAGCCATAACTTTA 712
Query 719 TCAACGGAAATGCCCCTGATTCCATCGGAGACTTGACAGAGCTTCTCAAGCTAGATCTCA 778
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 713 TCAACGGAAACGCCCCTGATTCCATCGGAGACTTGACAGAGCTTCTCAAGCTAGACCTCA 772
Query 779 GCTTCAATGAGTTCACCGGAGAGATTCCTTCCGGCGTCGGGAAATT-GAAAAAGCTCGAA 837
||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| |
Sbjct 773 GCTTCAATGAGTTCACCGGAGAGGTCCCTTCCGGCGTCGG-AAATTTGAAAAAGCTCGTA 831
Query 838 TTTTTGGACTTGAGTTACAACCGTTTCGGAAATTTCGGCGTTCCTCGGTTTCTAGCGGAG 897
||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 832 TTTTTAGACTTGAGTTACAACCGTTTCGGGAATTTCGGCGTTCCTCTGTTTCTAGCGGAG 891
Query 898 ATGCCCAGATTGAGAGAGCTTTTTCTGAGTGGGAACAATCTCGGTGGTCGTATACCGGAG 957
||| |||| ||||||||| || ||||||||||||||| ||||||||||||||||||| |
Sbjct 892 ATGTCCAGTTTGAGAGAGGTTCATCTGAGTGGGAACAAGCTCGGTGGTCGTATACCGGCG 951
Query 958 ATTTGGAAGAATCTCGAGGGTATTTCGGGAATTGGATTCTCGAGGATGGGTCTTGAAGGA 1017
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 952 ATTTGGAAGAATCTCGAGGGTATTTCGGGGATTGGATTCTCAAGGATGGGTCTTGAAGGA 1011
Query 1018 AATATCCCAACTTCAATGGGTTCGAGTCTTAAAAATCTCTGCTTTTTAGCGCTTGACAAC 1077
|| |||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1012 AACATCCCAGCTTCAATGGGTTCGAGTCTTAAAAATCTCTGCTTTCTAGCTCTTGACAAC 1071
Query 1078 AACAATCTCGACGGACATATCCCGGAGGAGTTTGGGTTTCTGGACTTTGCTCGTGAAATT 1137
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1072 AACAATCTCGACGGACAAATCCCGGAGGAGTTTGGGTTTCTGGACTCTGCTCGTGAAATC 1131
Query 1138 AATCTGGAGAACAACAATCTCACCGGAAAAGCTCCATTCTCCGACTGTTTCAGAGATAGA 1197
||||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1132 AATCTAGAGAACAATAACCTCACCGGAAAAGCTCCATTCTCCGACAGTTTCAGAGATAGA 1191
Query 1198 ATCGGGAAAAAACTCAAATTGAGCGGGAACCCAAATCTCCAAGTCAAGAATTCCGATCCT 1257
||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1192 ATCGGGAAAAAGCTCAAACTGAGCGGGAATGTAAATCTCCAAGTCAAGAATTCCGATCCT 1251
Query 1258 CATCTCGCCGGACGAGCTCTGTTTTCATCGGCGAGAAAGGTTTTACTTTTACCGTTGATT 1317
|||||||||||| ||||||| | ||||||||||||||||||||||| ||| | |||
Sbjct 1252 CATCTCGCCGGAAGAGCTCTATATTCATCGGCGAGAAAGGTTTTACCTTT---G---ATT 1305
Query 1318 TGCTTCCCGGCGGCTTTATTAGCTCTTTACGTTTTAATAACACAGTGA 1365
| |||||||||| ||||||| ||||||||| ||| |||||||||||||
Sbjct 1306 TACTTCCCGGCGACTTTATTGGCTCTTTACATTTCAATAACACAGTGA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5