BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491908
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28556.1 | Symbols: RIC7 | PAK-box/P21-Rho-binding family pr... 1356 0.0
> AT4G28556.1 | Symbols: RIC7 | PAK-box/P21-Rho-binding family
protein | chr4:14114104-14115897 FORWARD LENGTH=1403
Length=1403
Score = 1356 bits (734), Expect = 0.0
Identities = 934/1026 (91%), Gaps = 32/1026 (3%)
Strand=Plus/Plus
Query 1 TTATTTTCTCAAGAAAACTATGGATTCTTGAGCTAAATATATGGTTCTCCTATTCATTTT 60
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 373 TTATTTTCTCAAGAAAACTATGGATTCTTGAGCTAAATATATGATTCTCTTATTCA-TTT 431
Query 61 TTCATCATCCCTTTAATTTTGAAGAGTTTTATGGTCACAAAATTTTGTAAATATAAAGGT 120
||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 432 TTCATTATCCCTTAAATTTTGAAGAGTTTTATGGTCACAAATTTTTGTAAATATAAAGAT 491
Query 121 CATTTTTGTAG-tttttttACTGGTTTATTAAGCTACGAAATTTGGATATTTTCAATATA 179
||||||||||| |||| |||||||||||| |||| |||||||||||||||| ||||||
Sbjct 492 CATTTTTGTAGATTTTAAAACTGGTTTATTAGGCTAGGAAATTTGGATATTTTTAATATA 551
Query 180 TGCTCGTTCGTTGATCTTTTGCTCCTTTCATCGTTCATTCGTTTTGTACAAAT-----AA 234
||| |||| ||| | ||| | ||||||||||| ||||||||||||||||||| ||
Sbjct 552 TGCACGTT-GTT--T-TTTCGTTCCTTTCATCGGTCATTCGTTTTGTACAAATAAAACAA 607
Query 235 AAC------A-AA-AATTTGGTTTCCACAAAGAGAAGAGATCTATGCAACTCGCAATGTC 286
||| | || ||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 608 AACTAGGATACAAGAATTTGGTTTCCACAAAGAGAAGAGATATATGCAACTTGGAATGTC 667
Query 287 AAGTACCAAGATGAAAAGCCTCTTGAAAGGCCTCCGATACATATCTCAAGTTTTTGCAAT 346
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 668 AAGTACCAAGATGAAAAGTCTCTTGAAAGGCCTCCGATACATATCTCAAGTTTTTGCAAT 727
Query 347 AGAAAGTGAAAAGGAACAAGAGATGCAAATCGGAAATCCAACGGACGTAAAGCATGTTGC 406
|||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 728 AGAAGGTGAAAAGGAAGAAGAGATGCAAATAGGAAATCCAACGGACGTAAAGCATGTTGC 787
Query 407 CCACATTGGTTGGGATGGACCTTCAGATAATGCCACTGCACCTAGCTGGATGAACGATTT 466
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 788 CCACATTGGTTGGGATGGACCGTCTGATAATGCCACTGCACCTAGCTGGATGAACGATTT 847
Query 467 CAAGAGTTCTCCTGGAACGGAATCAACAACTCAATTATTTGGAGAAGACGATTCCTCAGT 526
|||||||||||||| || ||||| ||| |||| ||| ||||||||||||||||||||
Sbjct 848 CAAGAGTTCTCCTGTAATGGAAT---CAATTCAAGGATTAGGAGAAGACGATTCCTCAGT 904
Query 527 GAAATGTCAATCAGAGTTTGGTGGTCGGTCCAGAGATTTACCAAAACTACCAAAATCCAC 586
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 905 GAAATGTCAATCAGAGTTTGGTGGTCGGACTAGAGATTTACCAAAACTACCAAAATCCAC 964
Query 587 GAGAAAATCATCATCTGAGAAAGGTTCTCCGACAAAAGAAAGATCAGACAAGACCAAACG 646
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 965 GAGAAAATCATCGTCTGAGAAAGGTTCTCCGACCAAAGAAAGATCAGACAAGACCAAACG 1024
Query 647 TCGAACTTCAAACAAAGGCACTTCATCGTCTAGGAGAACCAAAGACGAAGATTCTACCTC 706
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1025 TCGGACTTCAAACAAAGGCACATCATCGTCTAGGAGAACCAAAGACGAAGATTCTACCTC 1084
Query 707 ATCGTCTAGGAGAAC---TAAAGACGAAGACTCTTCTTGGTCTCAACATAGTGTTGGATT 763
||||||||||||||| |||||| ||||| ||||||| |||||||||||||| ||||||
Sbjct 1085 ATCGTCTAGGAGAACAACTAAAGATGAAGATTCTTCTTTGTCTCAACATAGTGCTGGATT 1144
Query 764 ACCAGAGATTCCAAAGAAATCAAAGAGGAAGAAATCTAAAGAAGGTGGTAATGGAGGGTC 823
||||||| |||||||||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 1145 ACCAGAGGTTCCAAAGAAGTCAAAGAGAAAGAAATCTAAAGAAGCTGGTAATGGAGGGTC 1204
Query 824 TTCAAGATCGTCTCGAATATCAGAAGCTGATAAAATGTCGGATACTGGCTCCGTTAGATC 883
||| ||||| || |||||||||||||||||| | ||||| |||||||| |||| ||||||
Sbjct 1205 TTCGAGATCATCACGAATATCAGAAGCTGATTATATGTCTGATACTGGTTCCGATAGATC 1264
Query 884 TATACCTCAATTCGAAGACGACAGAAATGGGTTTTGATTTTCATTTTCGTAATTaaaaaa 943
||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 1265 TATGCCTCAATTTGAAGACGACAGAAATGGGTTTTGATTTTCATTTTCGT--T-AAAGAA 1321
Query 944 aaCACAAGAGACTTTTAAGTTTTGTAATAGTAAAGAAATGTTGTAAAAA-TTGTTGAAGA 1002
|||| | |||||||| ||||||||||||||||||||||||||||| ||| || ||||| |
Sbjct 1322 AACA-A-GAGACTTTAAAGTTTTGTAATAGTAAAGAAATGTTGTAGAAACTT-TTGAACA 1378
Query 1003 TAATCT 1008
|| |||
Sbjct 1379 TAGTCT 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5