BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491910
Length=1850
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28540.1 | Symbols: CKL6, PAPK1 | casein kinase I-like 6 | c... 2861 0.0
> AT4G28540.1 | Symbols: CKL6, PAPK1 | casein kinase I-like 6 |
chr4:14106959-14110706 FORWARD LENGTH=1960
Length=1960
Score = 2861 bits (1549), Expect = 0.0
Identities = 1769/1872 (94%), Gaps = 27/1872 (1%)
Strand=Plus/Plus
Query 1 TTTTTGATTTGGGGAATGTGACAAATCAATCTGGGTTGTCTGATTATTTTCTATGACTTT 60
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 27 TTTTTGATTTGGGGAATGTGACAAAGCAATCTGGGTTGTCTGATTATTTCCAATGACTTC 86
Query 61 CTTCTCTGTCTGATTCGTTTGTTTCGGCGATTCAACTCTTCTTCAACGCCCTG-G-GTCA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 87 CTTCTCTGTCTGATTCGTTTGTTTCGGCGATTCAACTCTTCTTCAACGCCCTGAGAGTCA 146
Query 119 CGCACGA-CATTGGATTGAT-GTTATTTCCCACGCAGGAGAGGCGATTC-TT-T-GTCTT 173
||||||| ||||||||||| ||| |||| ||||||||||||||||||| || | ||||
Sbjct 147 CGCACGAGAATTGGATTGATGGTT-TTTCACACGCAGGAGAGGCGATTCGTTGTCTTCTT 205
Query 174 CTTGTCCCGTTGACCTGTTTCGATCTAAGATGGTGATTATGCAGCA-CTTGCTTCTTAAT 232
|||||||||||||||||||||||||| ||||||||||||||||||| | || |||| |||
Sbjct 206 CTTGTCCCGTTGACCTGTTTCGATCTCAGATGGTGATTATGCAGCAGC-TGATTCTAAAT 264
Query 233 TAGGGCATTTAAATCCGCCTTCCAGGTG-A-TTTT-CAAAGT-ATT--A--------TTG 278
|||||||||||||||||||||||||||| | |||| ||||| ||| | |||
Sbjct 265 TAGGGCATTTAAATCCGCCTTCCAGGTGAATTTTTGAAAAGTAATTAAAGGGTGTTCTTG 324
Query 279 AATGGACTTGAAAATGGATAATGTAATTGGGGGCAAGTTTAAACTTGGTCGCAAGATCGG 338
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 325 AATGGACTTGAAAATGGATAATGTTATTGGGGGAAAGTTTAAACTTGGTCGGAAGATCGG 384
Query 339 CGGTGGCTCTTTTGGAGAGCTTTTTCTTGCCGTAAGTCTGCAAACCGGAGAGGAAGTAGC 398
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||
Sbjct 385 TGGTGGCTCTTTTGGAGAACTTTTTCTTGCCGTAAGTTTGCAAACCGGAGAGGAAGCAGC 444
Query 399 TGTTAAGCTGGAGCCTGCGAAAACTAAGCATCCTCAACTTCATTATGAGTCGAAGATATA 458
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 445 TGTTAAGCTGGAGCCTGCGAAAACTAAGCATCCCCAACTTCATTATGAGTCGAAGATATA 504
Query 459 CATGCTTCTACAAGGAGGAAGTGGCATCCCCAGTCTCAAGTGGTTTGGGGTTCAGGGAGA 518
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 505 CATGCTTCTACAAGGAGGAAGTGGCATCCCCAGCCTTAAGTGGTTTGGGGTTCAGGGAGA 564
Query 519 CTACAATGCGATGGTCATTGATCTACTCGGGCCCAGTTTGGAGGACTTGTTCAACTATTG 578
|||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| ||
Sbjct 565 CTACAATGCGATGGTCATTGATCTGCTTGGGCCGAGTTTGGAAGACTTGTTCAACTACTG 624
Query 579 TAATAGGAGGCTTACTTTGAAAGCAGTTTTGATGCTTGCAGATCAACTGATTAGCAGAGT 638
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 625 CAATAGGAGGCTTACTTTGAAGGCAGTTTTGATGCTTGCAGATCAACTGATTAGCAGAGT 684
Query 639 TGAATATATGCATTCAAGGGGATTTCTTCACCGTGACATAAAACCTGACAATTTCTTGAT 698
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 685 TGAATATATGCATTCAAGGGGGTTTCTTCACCGTGACATCAAACCTGACAATTTCTTGAT 744
Query 699 GGGACTTGGTCGCAAAGCAAACCAGGTGTATATCATTGATTTTGGGCTTGCAAAGAAGTA 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GGGACTTGGTCGCAAAGCAAACCAGGTGTATATCATTGATTTTGGGCTTGCAAAGAAGTA 804
Query 759 TAGGGATCTCCAAACACATAGGCACATCCCCTATAGAGAAAACAAGAACCTTACGGGCAC 818
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 805 TAGGGATCTCCAAACACATAGGCATATCCCCTATAGAGAAAACAAGAACCTTACGGGCAC 864
Query 819 AGCTCGGTATGCTAGTGTCAACACTCACCTTGGAGTTGAGCAAAGTAGGAGGGATGATCT 878
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 865 AGCTCGGTATGCTAGTGTCAACACTCACCTAGGAGTTGAGCAAAGTAGGAGGGATGATCT 924
Query 879 GGAGTCTCTTGGTTACGTGCTCATGTATTTCCTCAGAGGAAGCCTACCGTGGCAGGGACT 938
|||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 925 GGAGTCTCTTGGTTACGTACTCATGTATTTCCTGAGAGGAAGCTTACCGTGGCAGGGACT 984
Query 939 AAAAGCTGGCACGAAGAAGCAGAAGTATGACAGAATTAGCGAGAAGAAAGTATCAACTCC 998
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 985 AAAAGCTGGCACAAAGAAGCAAAAGTATGACAGAATTAGCGAGAAGAAAGTATCAACTCC 1044
Query 999 TATAGAGGTCTTGTGCAAGTCATATCCACCCGAATTCGTATCATACTTTCAATACTGCAG 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TATAGAGGTCTTGTGCAAGTCATATCCACCCGAATTCGTATCATACTTTCAATACTGCAG 1104
Query 1059 ATCTTTGCGATTTGAAGACAAACCAGACTACTCATATCTAAAGAGGCTTTTCAGAGACTT 1118
|||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1105 ATCTCTGCGATTCGAAGACAAACCAGACTACTCATATCTAAAGAGACTTTTCCGAGACTT 1164
Query 1119 GTTTATCCGTGAAGGTTATCAGTTTGACTATGTATTCGACTGGACTGCATTGAAACACCC 1178
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1165 GTTTATCCGTGAAGGTTATCAGTTTGATTATGTATTCGACTGGACTGCATTGAAACACCC 1224
Query 1179 TCAGAGTAGTGCCAGATCCCATTCCAGCACCCATGAAAGGCATCGTACCGGTAAACCAGG 1238
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1225 TCAGAGTAGTGCCAGGTCCCATTCCAGTACACATGAAAGGCATCGTACCGGTAAACCAGG 1284
Query 1239 GATGGCTGCGGGACCGTCTGCTGAAAAACCTGAAAGGATTTCAGTAGGGAACATCCGTGA 1298
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1285 GATGGGTGCGGGACCGTCTGCTGAAAAACCTGAAAGGATTTCAGTAGGGAACATCCGCGA 1344
Query 1299 TAAATTCTCAGGTGCAGTTGAAGCATTCGCGAGAAGGAATGTTAGAGGACCCAGTCCCCA 1358
||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1345 TAAATTCTCAGGTGCGGTCGAAGCATTTGCGAGAAGGAACGTTAGAGGACCCAGTCCCCA 1404
Query 1359 TCAAAACCATACCAGACATCGAACTCTTGACGAAATTCCTTCAATGAAACCTGCTGTGAA 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 TCAAAACCATACCAGACATCGAACTCTTGACGAAATTCCTTCAATGAAACCTGCTGTGAA 1464
Query 1419 TATGGTATCTGAGAAAGGAAGAAACACTTCCAGATACGGCAGTGCTTCAAGGAGAGCGGT 1478
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1465 TATGGTATCTGAGAAAGGAAGAAACACTTCCAGATACGGCAGTGCTTCGAGGAGAGCAGT 1524
Query 1479 AGCCTCAGGAAGTAGGCCAAGTTCATCTGGTGAACAAAGAGAGAGCCGGGACTCGAGCCG 1538
||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1525 AGCCTCAGGAAGTAGACCAAGCTCATCAGGTGAACAAAGGGAGAGCCGGGACTCGAGCCG 1584
Query 1539 TGTGGCCTCAAGCGGTAGCGGTATCCGACCATCAGTCTTTCAGAGAACTCAAGCAGCAGC 1598
|| |||||||||||| ||||| |||||||||||||||| || ||||| |||||||||||
Sbjct 1585 CGTAGCCTCAAGCGGTGGCGGTGTCCGACCATCAGTCTTCCAAAGAACCCAAGCAGCAGC 1644
Query 1599 TGCTGTGAGTGGATATGAGTCAAAGACAGCCTCTGCCTTTAACCGCGACAGAGTAGCTGC 1658
||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 1645 TGCTGTGAGTGGATACGAGTCAAAGACAGCATCTGCCTTTAACCGCGACCGAGTAGCCGC 1704
Query 1659 TTCAAGGACAGCACGAGACGAGGCTCTCAGAAGCTTCGAGCTTCTTTCGATCCGCAAATG 1718
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 TTCAAGAACAGCACGAGACGAGGCTCTCAGAAGCTTCGAGCTTCTTTCGATCCGCAAATG 1764
Query 1719 AAGCCTTCATCAATGGGCTCTTTGCTGTAAATTGGATTCTTCTTTACATATGTTATTTGG 1778
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1765 AAGCCTTCATCAATTGGCTCTTTGCTGTAAATTGGATTCTTCTTTACATATGTTGTTTGG 1824
Query 1779 TCCTTCGTTCCCACGAAACTCCCAATTTTTCATGTATTGTCATCATCTTCTCTGGATTTT 1838
||||| ||| |||||||||||||||||||||||||||| ||| || | |||||||||||
Sbjct 1825 TCCTTTGTTTCCACGAAACTCCCAATTTTTCATGTATTATCAA-AT-T-CTCTGGATTTT 1881
Query 1839 GTATCAAATTTT 1850
||||||| ||||
Sbjct 1882 GTATCAATTTTT 1893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91565794080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5