BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491912
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28530.1 | Symbols: anac074, NAC074 | NAC domain containing ... 1999 0.0
> AT4G28530.1 | Symbols: anac074, NAC074 | NAC domain containing
protein 74 | chr4:14090489-14094776 REVERSE LENGTH=1468
Length=1468
Score = 1999 bits (1082), Expect = 0.0
Identities = 1249/1325 (94%), Gaps = 29/1325 (2%)
Strand=Plus/Plus
Query 1 CTAAAGATTTATCCACGTAATGGGTTTGAAAGATATTGGGTCCAAATTGCCACCGGGGTT 60
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CTAAAGATTTCTTCACGTAATGGGTTTGAAAGATATTGGGTCCAAATTGCCACCGGGGTT 214
Query 61 TCGATTTCATCCAAGTGATGAAGAGTTGGTATGTCATTATCTTTGCAACAAGATTAGGGT 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 215 TCGATTTCATCCAAGTGATGAAGAGTTGGTTTGTCATTATCTTTGCAACAAGATTAGGGC 274
Query 121 CAAATCTGATTATGGTGATGTTGA-G--GATGATGA--A-GTTGATGAAGCTTTGAAGGG 174
|||||||||| ||||||||||||| | |||||||| | ||||||||||||||||||||
Sbjct 275 CAAATCTGATCATGGTGATGTTGATGATGATGATGATGATGTTGATGAAGCTTTGAAGGG 334
Query 175 CTCTACTGATCTTGTTGAGATTGACTTGCATATTTGTGAGCCATGGGAGCTTCCTGATGT 234
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 335 TTCTACTGATCTTGTGGAGATTGACTTGCATATCTGTGAGCCATGGGAGCTTCCTGATGT 394
Query 235 GGCAAAGTTAAACGCAAAGGAATGGTACTTCTTCAGTTTCCGCGATAGAAAATATGCGAC 294
|||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||
Sbjct 395 GGCAAAGTTAAACGCAAAGGAATGGTACTTCTTCAGTTTCCGTGATCGAAAGTATGCTAC 454
Query 295 TGGATATCGCACAAACAGAGCGACAATAAGCGGATACTGGAAAGCAACAGGAAAAGATCG 354
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 455 TGGATATCGCACGAACAGAGCGACAGTAAGCGGATACTGGAAAGCAACAGGAAAAGATCG 514
Query 355 AACGGTTATGGATCCACGTACAAGGCAATTGGTAGGGATGAGAAAAACACTGGTTTTCTA 414
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 515 AACGGTGATGGATCCACGTACAAGGCAATTGGTAGGGATGAGAAAAACACTAGTGTTCTA 574
Query 415 CAGGAACAGAGCACCAAATGGGATCAAAACTACTTGGATCATGCACGAGTTCCGTCTTGA 474
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CAGAAACAGAGCACCAAATGGGATCAAAACTACTTGGATCATGCACGAGTTCCGTCTTGA 634
Query 475 GTGTCCTAACATCCCACCTAAGGAAGACTGGGTCTTGTGCAGAGTGTTCAACAAAGGCAG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GTGTCCTAACATCCCACCTAAGGAAGACTGGGTCTTGTGCAGAGTGTTCAACAAAGGCAG 694
Query 535 AGACCCATCACTACAAGACAATAATTAT-A-A-CACTGATAATCAGACGCAAAGGCTTGA 591
|||| |||| |||||||||||||||||| | | || ||||||||||||||||||||||||
Sbjct 695 AGACTCATCGCTACAAGACAATAATTATTATAACAATGATAATCAGACGCAAAGGCTTGA 754
Query 592 AGTTAATGACGCTCCGGATCTTAATTACAACAATCAGTTACCACCTTTGCTATCATCCCC 651
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 755 AGTTAATGACGCTCCGGATCTTAATTACAACAATCAGTTGCCACCTTTGCTATCATCCCC 814
Query 652 TC-TACATAATCATCAACATGAGAAGATGAAAATCCAAGTTTGTGATCAGTGGGAGCAGC 710
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCCT-CATAATCATCAACATGAGAAGATGAAAATCCAAGTTTGTGATCAGTGGGAGCAGC 873
Query 711 TAATGAAGCAGCCTTCAAGGACCACCGACCACCCCTATCATCACCATTGTCATCATCACA 770
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 874 TAATGAAGCAGCCTTCAAGGACCACCGGCCACCCCTATCATCACCATTGTCATCATCAAA 933
Query 771 CCATATCATGTGGTTGGGAGCAGATGATGATCGGTTCGCTGTCATCATCTTCGAGTCATG 830
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 934 CCATAGCATGTGGTTGGGAGCAGATGATGATCGGTTCGCTGTCATCACCTTCGAGTCATG 993
Query 831 GCCCTGATCACGAGTCCTTGCTAAATTTGCTTTACGTCAACAATAACAACAGTGTCAACA 890
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 994 GCCCTGATCACGAGTCCTTGCTAAATTTGCTTTACGTCGACAATAACAACAGTGTCAACA 1053
Query 891 TCAGTGGTGATCATCATCAGAATTATGAGAAGAtttttttGTCATCACCAGACATGACGA 950
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1054 TCAGTGGTGATCATCATCAGAATTATGAGAAGATTTTGTTGTCATCACTAGACATGACGA 1113
Query 951 GTTTGGATCACGACAAGACATGTATGGGCTCATCATCGGATGGTGGTATGGTCTCTGATC 1010
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1114 GTTTGGATCACGACAAGACATGTATGGGATCATCATCGGATGGTGGTATGGTCTCTGATC 1173
Query 1011 TTCACATGGAATGTGGTGGCTTGAGTTTTGAGACAGAAAATCTCCTCACTTTCCAATGAA 1070
||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||
Sbjct 1174 TTCACATGGAATGTGGTGGATTGAGTTTTGAGACCGAAAATATCCTCGCTTTCCAATGAA 1233
Query 1071 CATAATTCAAGGGGTTCGCCGATTTGTTGATTCGTGAAATATACAAATAtttttttATCT 1130
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||
Sbjct 1234 CATAATTCAAGGGGTTCGCCAATTTGTTGATTCGTGAATTATACAAACATTTT---ATCT 1290
Query 1131 ATAGCTTTATCACATTATTAAACATGTAAGTTGTGTGGCATTTGGGTAtaggatttgtgt 1190
|||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1291 ATAGATTTATCACATTATCAAACATGTAAGTTGTGTGGCATTTGGGTATAGGGTTTGTGT 1350
Query 1191 gattttagggttttctaggagg-t-tat-t----atatttagtgtgtttttag-attttt 1242
|||| |||| |||| ||||| | | ||| | |||||||| |||||||||| |||| |
Sbjct 1351 GATTCTAGG-TTTT-TAGGACGATGTATGTTGTTATATTTAGCGTGTTTTTAGGATTTAT 1408
Query 1243 tcatttttcatttaAAAATTATATGTAAACCCATTACTATGAATATAATTAGTTTTCTTT 1302
|| | ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1409 TC-T----CATTTTAAAATTATATGAAAACCCATTACTATGAATACAATTAGTTTTCTTT 1463
Query 1303 GTTGT 1307
|||||
Sbjct 1464 GTTGT 1468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64306898145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5