BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491913
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28520.1 | Symbols: CRU3, CRC | cruciferin 3 | chr4:14087556... 2658 0.0
> AT4G28520.1 | Symbols: CRU3, CRC | cruciferin 3 | chr4:14087556-14089796
FORWARD LENGTH=1794
Length=1794
Score = 2658 bits (1439), Expect = 0.0
Identities = 1661/1764 (94%), Gaps = 32/1764 (2%)
Strand=Plus/Plus
Query 1 ATCTCTCACAACAAACTAAAAGAAAATGGTTAAGCTCGGCAAGCTCCTCGTTGCAACGTT 60
|||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 16 ATCTCTCACAACAAACAAAAAGAAAATGGTTAAGCTCAGCAATCTCCTCGTTGCAACCTT 75
Query 61 CGGGGTTCTCCTCGTCCTTAATGGCTGCCTTGCGAGGCAGTCGCTTGGGGTTCCTCCTCA 120
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 76 CGGGGTTCTCCTCGTCCTTAACGGCTGCCTTGCGAGGCAGTCACTTGGGGTTCCTCCTCA 135
Query 121 GCTACAGAACGAGTGTAACCTCGACAACCTAGACGTTCTCCAAGCCACCGAAACTATCAA 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 136 GCTACAGAACGAGTGTAACCTCGACAACCTAGATGTTCTCCAAGCCACCGAAACTATCAA 195
Query 181 GAGTGAAGCCGGTCAGATCGAGTACTGGGACCACAACAACCCTCAGCTCCGATGTGTTGG 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 196 GAGTGAAGCCGGTCAGATCGAGTACTGGGACCACAACCACCCTCAGCTCCGATGTGTTGG 255
Query 241 TGTTTCTGTCGCTCGTTATGTAATCGAACAAGGCGGTCTTTACTTGCCCACCTTCTTCAC 300
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 256 TGTTTCCGTTGCTCGTTATGTAATTGAACAAGGCGGTCTTTACTTGCCCACCTTCTTCAC 315
Query 301 TTCCCCAAAAATTTCCTACGTCGTTCAAGGAAGGGGTATTAGCGGAAGAGTGGTCCCTGG 360
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 316 TTCCCCAAAAATTTCCTACGTCGTTCAAGGAACGGGTATCAGCGGAAGAGTGGTCCCTGG 375
Query 361 ATGTGCGGAGACCTTCATGGACTCGCAACC-ATGGGAAGGACAGCAGGGGCAACAAGGCC 419
|||||| |||||||||||||||||||| || || | ||||||| | ||||||||||
Sbjct 376 ATGTGCCGAGACCTTCATGGACTCGCAGCCGAT-GCAAGGACA--A----CAACAAGGCC 428
Query 420 AACCATGGGAAGGACAG-CAGGGACAACAAGGCCAACCATgggaaggacagcagggacaa 478
|||||||| |||||| | ||||||||||||||||||||||||||||| | |||||||||
Sbjct 429 AACCATGGCAAGGAC-GACAGGGACAACAAGGCCAACCATGGGAAGG--A-CAGGGACAA 484
Query 479 caaggccaaccatgggaaggacagggacaa-ca-agg-acaacagggccaacagggacaa 535
|| || ||| || |||| |||| || ||| || || | |||||| ||||||||||||
Sbjct 485 CAGGGACAA-CA-AGGAA-GACAAGGCCAACCATGGGAAGGACAGGGACAACAGGGACAA 541
Query 536 caaggacaacagggccaacagggacaa-ca-agg-acaacagggacagcagggacaacaa 592
||||||| |||||| ||||| || ||| || || | ||||||||||||||||||||||
Sbjct 542 CAAGGACGACAGGGACAACAAGGCCAACCATGGGAAGGACAGGGACAGCAGGGACAACAA 601
Query 593 gggTTCCGTGACATGCACCAGAAGGTGGAACATGTCAGACGCGGAGACGTATTTGCCAAC 652
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 602 GGGTTCCGTGACATGCACCAGAAGGTGGAACATGTGAGACGCGGAGACGTCTTTGCCAAC 661
Query 653 ACTCCTGGCTCTGCCCACTGGATCTACAACTCCGGAGAACAGCCTCTTGTCATCATCGCT 712
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 662 ACTCCAGGCTCTGCCCACTGGATCTACAACTCAGGAGAACAGCCACTTGTCATCATCGCT 721
Query 713 CTTCTCGACATCGCCAACTACCAAAACCAACTCGACCGCAACCCTAGAGTGTTCCGTTTA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 722 CTTCTCGACATCGCCAACTACCAAAACCAACTCGACCGCAACCCTAGAGTGTTCCATTTG 781
Query 773 GCCGGAAACAACCAACAGGGCGGCTTTGGCGGTTCACAGCAACAACAAGAACAGAAAAAC 832
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 782 GCCGGAAACAACCAGCAGGGAGGCTTTGGCGGTTCACAGCAACAACAAGAACAGAAAAAC 841
Query 833 ATGTGGAGCGGGTTCGACGCACAGGTCATAGCTCAAGCATTGAAAATCAACGTTAAATTG 892
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 842 TTGTGGAGCGGGTTCGACGCACAGGTCATAGCTCAAGCATTGAAAATTGACGTTCAGTTG 901
Query 893 GCTCAGGAGCTTCAAAACCAACAAGACAGCCGAGGAAACATCGTTCGTGTTAAGGGACCT 952
|||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 902 GCTCAGCAGCTTCAGAACCAACAAGACAGCAGAGGAAACATCGTTCGTGTTAAGGGACCT 961
Query 953 TTCCAGGTCGTGAGGCCACCTCTAAGACAGCCCTACGAGAGCGAGGAGTGGAGACACCCA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TTCCAGGTCGTGAGGCCACCTCTAAGACAGCCCTACGAGAGCGAGGAGTGGAGACACCCA 1021
Query 1013 CGTAGCCCACAGGGTAACGGCCTTGAGGAGACTATCTGCAGCATGAGGTCCCACGAGAAC 1072
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CGTAGCCCACAGGGCAACGGCCTTGAGGAGACTATCTGCAGCATGAGGTCCCACGAGAAC 1081
Query 1073 ATTGACGACCCTGCTCGTGCTGACGTGTACAAGCCCAACCTAGGTCGTGTAACTAGCGTC 1132
||||||||||||||||||||||||||||||||||||| ||||||||| || || ||||||
Sbjct 1082 ATTGACGACCCTGCTCGTGCTGACGTGTACAAGCCCAGCCTAGGTCGCGTGACCAGCGTC 1141
Query 1133 AACAGCTATACCTTGCCCATCTTGGAGTATGTCAGGCTCAGCGCCACTCGTGGCGTTATC 1192
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1142 AACAGCTATACCTTGCCCATCTTGGAGTATGTCAGGCTCAGTGCCACTCGTGGCGTTCTC 1201
Query 1193 CAGGGTAACGCGATGGTGCTTCCGAAATACAACATGAACGCTAACGAGATCTTGTACTGC 1252
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1202 CAGGGTAATGCGATGGTGCTTCCTAAATACAACATGAACGCTAACGAGATCTTGTACTGC 1261
Query 1253 ACTGGAGGACAAGGAAGAATCCAAGTGGTCAACGACAACGGACAGAACGTGTTGGACCAG 1312
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 ACTGGAGGACAAGGAAGGATCCAAGTGGTCAACGACAACGGACAGAACGTGTTGGACCAA 1321
Query 1313 CAGGTGCAGAAGGGACAGCTCGTGGTCATCCCACAAGGGTTCGCATACGTTGTCCAGTCC 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CAGGTGCAGAAGGGACAGCTCGTGGTCATCCCACAAGGGTTCGCATACGTTGTCCAGTCC 1381
Query 1373 CACGGAAACAAGTTCGAGTGGATCTCTTTCAAGACTAATGAAAACGCGATGATCAGCACT 1432
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1382 CACGGAAACAAGTTCGAGTGGATCTCTTTCAAAACTAATGAAAACGCAATGATCAGCACT 1441
Query 1433 TTGGCGGGTCGAACCTCGCTCTTGAGGGCATTGCCATTGGAGGTCATATCAAATGGTTTC 1492
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TTGGCGGGTAGAACCTCGCTCTTGAGGGCATTGCCATTGGAGGTCATATCAAATGGTTTC 1501
Query 1493 CAGATCTCTCCCGAGGAAGCTAGGAAGATCAAGTTCAACACATTTGAGACCACTTTGACT 1552
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1502 CAGATCTCTCCCGAGGAAGCTAGGAAGATCAAGTTCAACACACTTGAGACCACTTTGACC 1561
Query 1553 CGCGCCT-CCGGTAGGCAACAACA---GTTGATCGAGGAGATCGTCGAGGCTTAAG-CAA 1607
||||| | |||||||||||||||| ||||||||||||||| |||||||||||| |||
Sbjct 1562 CGCGC-TGCCGGTAGGCAACAACAACAGTTGATCGAGGAGATTGTCGAGGCTTAAATCAA 1620
Query 1608 AACGttttt-tt---CTTAATAAAGTATGGTCAGTTTGTAATCATGTCCGTCTACCTTTA 1663
||||||||| || ||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 1621 AACGTTTTTCTTTTTCTTAATAAAGTATGGTCAGTTTGTAATCACGTCCCTTTACCTTTA 1680
Query 1664 ACGTACGTGTAAAATATGTGTCTGCGGCACCTCACTTGTAATAACACTTTCTTCTCATAA 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 ACGTACGTGTAAAATATGTGTCTGCGGCACCTCACTTGTAATAACACTTTCTTCTCATAA 1740
Query 1724 ATAAAAGGGAAGTTTCGAGTTACA 1747
||||||||||||||||||||||||
Sbjct 1741 ATAAAAGGGAAGTTTCGAGTTACA 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88101956475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5