BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491917
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28510.1 | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084... 1570 0.0
AT2G20530.1 | Symbols: ATPHB6, PHB6 | prohibitin 6 | chr2:88419... 752 0.0
> AT4G28510.1 | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084749-14086844
REVERSE LENGTH=1185
Length=1185
Score = 1570 bits (850), Expect = 0.0
Identities = 943/988 (95%), Gaps = 6/988 (1%)
Strand=Plus/Plus
Query 1 CTCCAATAGAAGTCAGAGCTTAAACCCTAAACCCCTTACTCCACGATCTTCCTCTTCATC 60
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| ||
Sbjct 2 CTCCAATAGAAGTCTGAGCTTAAACCCTAAACCCCTTTCTCCACGATCTTCCTTTTCCTC 61
Query 61 TCTCTGTGACTTGAAGCAAAGTTTTCAGAAAAAGAGATGAATTTGAACAACGTCAAAGTT 120
|||||| ||||||||||||||||| ||| |||| ||| | | |||||||||||||||||
Sbjct 62 TCTCTGCGACTTGAAGCAAAGTTTCCAG-AAAA-AGA-G-A--TGAACAACGTCAAAGTT 115
Query 121 CCGAAGGTGCCAGGTGGTGGTGCCATTTCGGCGTTGCTTAAGATCGGGATTATTGGTGGG 180
|| ||| | ||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 116 CCAAAGATACCAGGTGGTGGTGCCATTTCGACGTTGCTTAAGGTTGGGATTATTGGTGGG 175
Query 181 CTTGGTCTCTACGGTGCTACACACAGTCTCTACAATGTTGAAGGAGGACATCGAGCCATC 240
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 176 CTTGGTCTCTATGGTGCTACGCACAGTCTCTACAATGTTGAAGGAGGACATCGAGCCATC 235
Query 241 ATGTTCAATCGTTTAATCGGTATTAAAGATAAGGTTTACCCTGAGGGTACACACCTTATG 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 ATGTTCAATCGTTTAGTCGGTATTAAAGATAAGGTTTACCCTGAGGGTACACACCTTATG 295
Query 301 GTTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGCGCTCGACCTTACCTTGTTGAG 360
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 296 ATTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGTGCTCGACCTTACCTTGTTGAG 355
Query 361 AGTACATCCGGAAGCCGTGATCTTCAGATGGTGAAAATTGGGCTCAGGGTTCTCACGCGT 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 356 AGTACATCCGGAAGCCGTGATCTTCAGATGGTGAAAATTGGGCTTAGGGTTCTCACACGT 415
Query 421 CCCATGGCAGACCAGTTACCTGAAATCTACAGAACCCTTGGTGAGAACTACAGCGAGAGA 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 416 CCCATGGCAGACCAGTTACCTGAAATCTACAGAAGCCTTGGTGAGAACTACAGCGAGAGA 475
Query 481 GTTCTGCCTTCTATAATCCATGAGACTCTGAAAGCTGTGGTTGCTCAGTACAATGCAAGC 540
||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 476 GTTCTACCTTCTATAATCAACGAGACTTTGAAAGCTGTGGTTGCTCAGTACAATGCAAGC 535
Query 541 CAGCTTATTACTCAGAGAGAGGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGCACGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 536 CAGCTTATTACTCAGAGAGAGGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGA 595
Query 601 GCAGCAAACTTCAACGTTGCGCTTGACGATGTGTCCATCACGACCCTGACATTCGGGAAG 660
|||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 596 GCAGCAAACTTCAATGTTGCGCTTGACGATGTGTCCATCACAAACCTGACATTCGGGAAG 655
Query 661 GAGTTCACAGCTGCCATTGAAGCCAAGCAGGTGGCGGCTCAAGAGGCTGAGCGGGCTAAG 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 656 GAGTTCACAGCTGCCATTGAAGCAAAGCAGGTGGCGGCTCAAGAGGCTGAGCGGGCTAAG 715
Query 721 TTCATCGTTGAGAAGGCCGAACAAGACAAGAGAAGTGCTGTTATCCGCGCACAGGGAGAA 780
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 716 TTCATTGTTGAGAAGGCCGAACAAGACAAGAGAAGTGCTGTTATCCGCGCCCAGGGAGAA 775
Query 781 GCCAAGAGTGCTCAGCTCATTGGTCAAGCAATTGCAAACAACCAAGCGTTTATCACGCTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GCCAAGAGTGCTCAGCTCATTGGTCAAGCAATTGCAAACAACCAAGCGTTTATCACGCTC 835
Query 841 AGGAAGATAGAGGCTGCAAGAGAGATTGCACAGACCATAGCAAACTCTGCGAACAAGGTG 900
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 836 AGGAAGATCGAGGCTGCAAGAGAGATTGCACAGACCATAGCAAACTCGGCGAACAAGGTT 895
Query 901 TACTTGAGCTCAGACGATCTGTTGCTTAACCTACAAGAGATGAATTTGGATGTCGATGCA 960
|||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||
Sbjct 896 TACTTGAGCTCAGACGATCTTTTGCTTAACCTACAAGGGATGAATTTGGATGTTGATGCA 955
Query 961 AAGAAGTAGAGATGTTTCTTAAGTaaaa 988
||||| |||||| |||||||||||||||
Sbjct 956 AAGAACTAGAGAGGTTTCTTAAGTAAAA 983
> AT2G20530.1 | Symbols: ATPHB6, PHB6 | prohibitin 6 | chr2:8841972-8844000
FORWARD LENGTH=1165
Length=1165
Score = 752 bits (407), Expect = 0.0
Identities = 740/896 (83%), Gaps = 41/896 (5%)
Strand=Plus/Plus
Query 91 AAAGAGATGAATTTGAACAACGTCAAAGTT-CCGAAGGTGCCAGGTGGTGGTGCCATT-T 148
||| |||||||||| || || ||||||||| || ||||| || |||||||||| || |
Sbjct 87 AAA-AGATGAATTTTAAGAATGTCAAAGTTCCCAAAGGT-CCTGGTGGTGGTG---TTAT 141
Query 149 CGGCGTTGCTTAAGATCGGGATTATTGGTGGGCTTGGTCTCTACGGTGCTACACACAGTC 208
|| ||| | | || ||||||| ||||| |||| ||||||||||| |||| ||
Sbjct 142 -AGC--TGC----GGT--GG-TTATTGGGGGGCTCAGTCTTTACGGTGCTACGCACACTC 191
Query 209 TCTACAATGTTGAAGGAGGACATCGAGCCATCATGTTCAATC-GTTTAATCGGTATTAAA 267
|||||||||| || ||||| ||||||||||| | || || | | || | ||||| |||
Sbjct 192 TCTACAATGTCGATGGAGGTCATCGAGCCATTGTCTTTAACCGGCTT-GTTGGTATCAAA 250
Query 268 GATAAGGTTTACCCTGAGGGTACACACCTTATGGTTCCTTGGTTTGAAAGGCCGGTCATC 327
|| ||||| |||||||||||||| ||||||||| |||| ||||| |||||||| |||||
Sbjct 251 GACAAGGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCATC 310
Query 328 TATGACGTTCGCGCTCGA-CCTTACCTTGTTGAGAGTACATCCGGAAGCCGTGATCTTCA 386
||||||||||| || | ||||| || |||||||| ||||| || ||||||||||| ||
Sbjct 311 TATGACGTTCGTGC-AAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCA 369
Query 387 GATGGTGAAAATTGGGC-TCAGGGTTCTCACGCGTCCCATGGCAGACCAGTTACCTGAAA 445
|||||| || ||||||| || |||||||||| ||||| ||||| ||||| ||||| ||
Sbjct 370 GATGGTTAAGATTGGGCTTC-GGGTTCTCACCCGTCCTATGGCTGACCAATTACCAGAGG 428
Query 446 TCTACAGAACCCTTGGTGAGAACTACAGCGAGAGAGTTC-TGCCTTCTATAATCCATGAG 504
| ||| | ||||||||||||| ||| ||||||||| || |||||||||| ||||| |||
Sbjct 429 TATACCGGTCCCTTGGTGAGAATTACCGCGAGAGAG-TCTTGCCTTCTATCATCCACGAG 487
Query 505 A-CTCTGAAAGCTGTGGTTGCTCAGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGGC 563
| || ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 488 ACCT-TGAAAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAGAGTC 546
Query 564 GGTCAGTAGGGAGATCAGGAAGATTCTGACTGC-ACGAGCAGCAAACTTCAACGTTGCGC 622
||| ||||| || |||||||| || || ||| | | |||| ||||||||| || |||| |
Sbjct 547 GGTGAGTAGAGAAATCAGGAAAATCCTAACT-CTAAGAGCCGCAAACTTCCACATTGCAC 605
Query 623 TTGACGATGTGTCCATCACGA-CCCTGACATTCGGGAAGGAGTTCACAGCTGCCATTGAA 681
| || |||||||||||||| | | |||||||||| ||||||||||| || ||||| |||
Sbjct 606 TGGATGATGTGTCCATCAC-AGGCTTGACATTCGGAAAGGAGTTCACGGCAGCCATAGAA 664
Query 682 GCCAAGCAGGTGGCGGCTCAAGAGGCTGAGCGGGCTAAGTTCATCGTTGAGAAGGCCGAA 741
| |||||||| || ||||||||||| || |||||||||||||| || ||||| || |||
Sbjct 665 GGAAAGCAGGTCGCTGCTCAAGAGGCCGAACGGGCTAAGTTCATTGTCGAGAAAGCTGAA 724
Query 742 CAAGACAAGAGAAGTGCTGTTATCCGCGCAC-AGGGAGAAGCCAAGAGTGCTCAGCTCAT 800
|| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 725 CAGGACAAGAGAAGTGCTGTTATCCGCGC-CGAGGGAGAAGCCAAGAGTGCTCAGCTCAT 783
Query 801 TGGTCAAGCAATTGCAAACAACCAAGCGTT-TATCACGCTCAGGAAGATAGAGGCTGCAA 859
|||||||||||| ||||||||||||||||| | | || || |||||||| || || || |
Sbjct 784 TGGTCAAGCAATCGCAAACAACCAAGCGTTCT-TAACACTGAGGAAGATCGAAGCAGCTA 842
Query 860 GAGAGATTGCACAGACCATAGCAAACTCTGCGAACAAGGTGTACTTGAGCTC-AGACGAT 918
||||||| ||||||||||| | | || ||||||||||| ||||||||||| | |||||
Sbjct 843 GAGAGATCGCACAGACCATCTCTAGGTCGGCGAACAAGGTTTACTTGAGCTCTA-ACGAT 901
Query 919 CTGTTGCTTAACCTACAAGAGATGAAT-TTGGATGTCGATGCA-AAGAAGTAGAGA 972
||||||||||||||||| | ||| | ||| |||| || || ||||||||||||
Sbjct 902 CTGTTGCTTAACCTACAGGCTATGGACCTTG-ATGT-GAAGCCGAAGAAGTAGAGA 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5