BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491919
Length=3225
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28490.1 | Symbols: RLK5, HAE | Leucine-rich receptor-like p... 4680 0.0
> AT4G28490.1 | Symbols: RLK5, HAE | Leucine-rich receptor-like
protein kinase family protein | chr4:14077857-14081171 FORWARD
LENGTH=3243
Length=3243
Score = 4680 bits (2534), Expect = 0.0
Identities = 3018/3250 (93%), Gaps = 39/3250 (1%)
Strand=Plus/Plus
Query 1 AAGAAGAATAACGATT-CTCTTTCCaaaaaaaTGTTTTATTGTCTTATTCTCCTACTATG 59
|||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||||
Sbjct 8 AAGAAGAATAACGATTCCT-TTTCCAAAAAAATGCTTTATTGTCTTATTCTCCTCCTATG 66
Query 60 TCTCTCTTCTACGTA--T-CCAAGCCTATCTCTGAACCAAGATGCCACCATTCTCCGGCA 116
||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 67 TCTCTCTTCTACGTATCTACCAAGTCTATCTCTAAACCAAGATGCCACCATTCTCCGGCA 126
Query 117 AGCCAAACTGGGCTTATCCGACCCGGCCCAGTCCCTATCTTCGTGGTCCGACAACAACGA 176
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 127 AGCCAAACTGGGCTTATCCGACCCGGCCCAGTCCCTATCTTCATGGTCCGACAACAACGA 186
Query 177 CGTCACCCCATGCACGTGGCGAGGCGTGAGCTGCGACGACACGTCAGCCGTTGTCTCCGT 236
|||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct 187 CGTCACCCCATGCAAGTGGCTAGGCGTGAGCTGCGACGCCACGTCAAACGTTGTCTCCGT 246
Query 237 CGATCTCTCAAGCTTCATGCTCGTCGGACCTTTCCCCTCCATCCTCTGCAACCTTCCTTC 296
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 247 CGATCTCTCAAGCTTCATGCTCGTCGGACCTTTCCCCTCCATCCTCTGCCACCTTCCTTC 306
Query 297 TCTCCACTT-CCTCTCTCTATATAACAACTCCATCAATGGTTCTCTCTCCGGTGACGACT 355
|||||| || ||||||||||||||| |||||||||||||| |||||||||| |||||||
Sbjct 307 TCTCCA-TTCCCTCTCTCTATATAATAACTCCATCAATGGCTCTCTCTCCGCCGACGACT 365
Query 356 TCAACACGTGTCGGAATCTCATCAGTCTCGATTTATCGGAGAATCTTTTGGTTGGATCCA 415
|| | ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 366 TCGATACGTGTCACAATCTCATCAGTCTTGATTTATCGGAGAATCTATTGGTTGGATCCA 425
Query 416 TCCCAAAGTCACTTCCTTTCAATCTTCCGAACCTCAAGTTCCTCGAGTTCTCCGGGAACA 475
||||||||||||||||||||||||| || |||||||||||||| || ||||||| ||||
Sbjct 426 TCCCAAAGTCACTTCCTTTCAATCTCCCAAACCTCAAGTTCCTTGAAATCTCCGGAAACA 485
Query 476 ACTTATCAGACACGATCCCTG-CGAGCTTCGGAGAGTTCCAAAAGCTAGAGTCTTTAAAC 534
||||||||||||||||||| | |||||||||||||||| | |||||| ||||||||||||
Sbjct 486 ACTTATCAGACACGATCCC-GTCGAGCTTCGGAGAGTTTCGAAAGCTTGAGTCTTTAAAC 544
Query 535 CTCGCCGGTAACTTCCTCTCCGGCACAATTCCCGCCTCTCTCGGTAACGTCACGACTCTT 594
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 545 CTCGCCGGTAACTTCCTCTCCGGTACAATTCCCGCCTCTCTCGGTAACGTCACGACTCTT 604
Query 595 AAAGAACTCAAACTCGCTTACAATTTGTTTTCTCCGAGTCAAATCCCGAGCCAACTCGGA 654
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 605 AAAGAACTCAAACTCGCTTACAATTTGTTTTCTCCGAGTCAAATCCCGAGTCAACTCGGA 664
Query 655 AATCTGACGGAGCTCCAAGTTCTCTGGCTCGCCGGCTGCAACCTCGTCGGTCC-AGTACC 713
|| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 665 AACCTCACGGAGCTCCAAGTTCTCTGGCTCGCCGGCTGCAACCTCGTCGGTCCGA-TACC 723
Query 714 TCCAG-CTCTGTCC-GGATTAACTCGTTTGGTTAACTTGGATATGACATTAAACCGACTC 771
||| | |||||||| || |||||| ||||||||||||||||| ||||||| |||| ||||
Sbjct 724 TCC-GTCTCTGTCCCGG-TTAACTAGTTTGGTTAACTTGGATTTGACATTTAACCAACTC 781
Query 772 ACAGGATCCATCCCAAGTTGGATCACACAGCTAAAGACCGTTGAGCAAATCGAACTATTC 831
|||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 782 ACAGGATCTATCCCAAGTTGGATCACGCAGCTAAAAACCGTCGAGCAAATCGAACTATTC 841
Query 832 AACAACTCGTTCTCAGGCGAGTTACCGGAAGCTATGGGTAACATGACGTCGCTAAAAAGA 891
|||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||
Sbjct 842 AACAACTCGTTCTCAGGCGAGTTACCAGAATCCATGGGTAACATGACGACGCTAAAAAGA 901
Query 892 TTCGACGCGTCGATGAACCAGCTGAGAGGGAAGATACCCGACGGCTTAAATCTGTTAAAC 951
||||||||||||||||| |||||| ||| || ||||||||| ||| ||||||||||||
Sbjct 902 TTCGACGCGTCGATGAATAAGCTGACAGGAAAAATACCCGACAACTTGAATCTGTTAAAC 961
Query 952 CTCGAGTCACTCAATCTCTTCGAGAACATGCTCGAAGGTCCCTTGCCAGAGAGCATAACT 1011
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 962 CTCGAGTCACTCAATCTCTTCGAGAACATGCTCGAAGGTCCTTTACCGGAGAGCATAACT 1021
Query 1012 CGCTCCAAAACCTTGTCAGAACTCAAGCTTTTCAACAACAGACTCACCGGAACAGTACCG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1022 CGCTCCAAAACCTTGTCAGAACTCAAGCTTTTCAACAACAGACTCACCGGAGTATTACCG 1081
Query 1072 AGTCAACTCGGCGCTAACTCTCCGTTACAGTACGTGGACCTT-TCGTATAACCGATTTTC 1130
|||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||
Sbjct 1082 AGTCAACTCGGCGCTAACTCACCGTTACAGTACGTGGAC-TTATCGTATAACCGATTTTC 1140
Query 1131 CGGCGAAATACCAGCGAATCTCTGCGGTGAAGGGAAGCTAGAGTATCTAATTCTTATAGA 1190
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CGGCGAAATACCGGCGAATGTCTGCGGTGAAGGGAAGCTAGAGTATCTAATTCTTATAGA 1200
Query 1191 CAATTCGTTCTCCGGAGAAATCTCGAATAATCTAGGAATGTGTAAGAGCTTGACTCGGGT 1250
||||||||| || ||||||||||| |||||||| |||| ||||||||||||||| |||||
Sbjct 1201 CAATTCGTTTTCAGGAGAAATCTCTAATAATCTCGGAAAGTGTAAGAGCTTGACCCGGGT 1260
Query 1251 CCGATTGAGTAACAACAATCTTTCGGGTCATATCCCAGACG-AGTTCTGGGGATTGCCTC 1309
|||||||||||||||||| ||||||||||| |||||| | | | ||||||||||||||||
Sbjct 1261 CCGATTGAGTAACAACAAGCTTTCGGGTCAAATCCCACATGGA-TTCTGGGGATTGCCTC 1319
Query 1310 GCTTGTCACTGCTCGAACTCTCTGAAAATTCATTCACCGGAAGTATTCAC-AAGACGATC 1368
|||||||||| |||||||||||||| ||||| |||||||||||||||| | |||||||||
Sbjct 1320 GCTTGTCACTTCTCGAACTCTCTGACAATTCGTTCACCGGAAGTATTC-CTAAGACGATC 1378
Query 1369 -TCCAGTGCGAAGAATCTATCGAACCTACGAATCTCAAAGAATCAATTTTCAGGCTCCAT 1427
|| | ||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 1379 ATCG-GCGCGAAGAATCTATCGAACCTACGAATCTCAAAGAATCGATTTTCAGGTTCAAT 1437
Query 1428 ACCCAACGAAATCGGATCGCTTAAAGGACTGATCGAGATTTCCGGAGCGGAGAATGATTT 1487
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 1438 CCCCAACGAAATCGGATCGCTTAACGGAATAATCGAGATTTCCGGAGCGGAGAATGATTT 1497
Query 1488 CACCGGTGAAATTCCTAGTA-GCTTGGTGAAATTGAAGCAGTTGAGCAGGCTTGATCTCA 1546
| ||||||| |||||| | | ||||||||||||||||||| |||||||||||||||||||
Sbjct 1498 CTCCGGTGAGATTCCT-GAAAGCTTGGTGAAATTGAAGCAATTGAGCAGGCTTGATCTCA 1556
Query 1547 GTAAGAATCAACTCTCCGGCGAGATTCCTAAAGGAA-T-CAGTGGTTGGAAGAATCTAAA 1604
||||||||||||||||||| |||||||||| || || | | |||||||||||||||||||
Sbjct 1557 GTAAGAATCAACTCTCCGGTGAGATTCCTAGAG-AACTTC-GTGGTTGGAAGAATCTAAA 1614
Query 1605 TGAGCTCAATTTGGCTAATAATCATCTCTCCGGTGAAATCCCTAGAGAAGTCGGAATGTT 1664
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1615 CGAGCTTAATTTGGCTAATAATCATCTCTCCGGTGAAATCCCTAAAGAAGTCGGAATCTT 1674
Query 1665 ACCTGTTCTCAATTACCTTGATCTCTCCAA-CAATCAATTCTCCGGTGAAATTCCGTTGG 1723
||||||||||||||||||||| || || || |||||||||||||||||| ||||||||||
Sbjct 1675 ACCTGTTCTCAATTACCTTGACCTTTC-AAGCAATCAATTCTCCGGTGAGATTCCGTTGG 1733
Query 1724 AGTTACAGAATCTGAAGCTAAACGTTTTAAATCTTTCGTATAATCACCTCTCCGGCAAAG 1783
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1734 AGTTACAGAATCTGAAGCTAAACGTTTTAAACCTTTCGTATAATCACCTCTCCGGTAAAA 1793
Query 1784 TTCCTCCTCTCTACGCGAATAAAATCTACGTTCATGACTTCCTCGGCAATCCCGGTTTAT 1843
| |||||||||||||| ||||||||||||| ||||||||| |||| |||||||||||||
Sbjct 1794 TCCCTCCTCTCTACGCTAATAAAATCTACGCACATGACTTCATCGGAAATCCCGGTTTAT 1853
Query 1844 GCGTTGATCTCGACGGTCTTTGTCGGAAGATCACACGGTCTAGAAACATTGGTTATGTTT 1903
| |||||||||||||| ||||||||||||||||||||||||| |||||| || ||||| |
Sbjct 1854 GTGTTGATCTCGACGGCCTTTGTCGGAAGATCACACGGTCTAAAAACATCGGCTATGTAT 1913
Query 1904 GGATTCTCCTAACGATTTTCTTACTCGCCGGTTTGGTTTTTGTCGTCGGGATCGTTATGT 1963
||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1914 GGATTCTTTTAACGATTTTCTTACTCGCCGGTTTGGTTTTCGTTGTCGGGATCGTTATGT 1973
Query 1964 TCATTGCCAAGTGCAGAAAACTCAGAGCCTTGAAGAGCTCTAATTTGGCAGCGTCTAAAT 2023
||||||||||||| |||||||||||||| |||||||| |||| ||| |||||||| ||||
Sbjct 1974 TCATTGCCAAGTGTAGAAAACTCAGAGCTTTGAAGAGTTCTACTTTAGCAGCGTCGAAAT 2033
Query 2024 GGAGATCCTTCCATAAGCTTCATTTCAGTGAGCACGAGATAGCTGATTGTCTCGATGAAC 2083
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 GGAGATCATTCCACAAGCTTCATTTCAGTGAGCACGAGATAGCTGATTGTCTCGATGAAA 2093
Query 2084 GGAACGTAATAGGATCTGGATCTTCAGGTAAAGTGTATAAAGCTGAGCTTAGCGGCGGAG 2143
||||||||| || | ||||||||| |||||||| ||||||| ||||||||| || ||||
Sbjct 2094 AGAACGTAATCGGGTTTGGATCTTCTGGTAAAGTCTATAAAGTTGAGCTTAGAGGTGGAG 2153
Query 2144 AAGTTGTAGCTGTGAAGAAACTCAACAAAACTGTTAAAGAAGGAGATGA--A-TACAGT- 2199
|||||||||||||||||||||| ||||||| |||||||| ||||||||| | ||||||
Sbjct 2154 AAGTTGTAGCTGTGAAGAAACTTAACAAAAGTGTTAAAGGAGGAGATGATGAATACAGTA 2213
Query 2200 G--ATTCGTTGAATAGAGATGTTTTTGCTGCGGAGGTCGAAACGTTGGGAACGATTAGGC 2257
| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 2214 GTGATTCGTTGAATAGAGATGTTTTTGCAGCGGAGGTTGAAACGTTGGGGACGATTAGGC 2273
Query 2258 ATAAGAGTATTGTGCGTTTGTGGTGTTGTTGCAGCTCCGGTGATTGTAAGTTGTTGGTAT 2317
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2274 ACAAGAGTATTGTGCGTTTGTGGTGTTGTTGCAGCTCTGGTGATTGTAAGTTGTTGGTGT 2333
Query 2318 ACGAGTACATGCCTAATGGGAGCTTAGCTGATGTGTTGCACGGGGACCGCAAAGGCGGGG 2377
| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 2334 ATGAGTACATGCCTAATGGGAGCTTAGCTGATGTGTTGCATGGTGACCGCAAAGGCGGTG 2393
Query 2378 TGGTGTTGGGTTGGCCAGAGCGGTTGAGAATCGCTTTGGATGCTGCTGAAGGTCTATCAT 2437
| |||||||||||||||||||||||||| || |||||||| ||||| || ||| ||||||
Sbjct 2394 TTGTGTTGGGTTGGCCAGAGCGGTTGAGGATTGCTTTGGACGCTGCCGAGGGTTTATCAT 2453
Query 2438 ACTTGCACCATGATTGCGTTCCTCCCATTGTGCACCGCGATGTGAAGTCGAGTAACATAC 2497
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 ACTTGCACCATGATTGTGTTCCTCCCATTGTGCACCGCGATGTGAAGTCGAGTAACATAC 2513
Query 2498 TGCTAGATAGAGATTATGGGGCCAAAGTTGCTGACTTTGGGATCGCTAAAGTCGGTCAGA 2557
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2514 TGCTAGATAGCGATTATGGGGCTAAAGTTGCTGACTTTGGGATCGCTAAAGTCGGTCAGA 2573
Query 2558 TGAGCGGTTCCAAAACTCCAGAAGCTATGTCCGGGATCGCCGGTAGTTGTGGTTACATTG 2617
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2574 TGAGTGGTTCCAAAACTCCAGAAGCTATGTCCGGGATCGCCGGTTCTTGTGGTTACATTG 2633
Query 2618 CACCAGAGTACGTATATACGCTTCGGGTGAATGAAAAGAGCGATATCTACAGCTTCGGTG 2677
||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2634 CACCAGAATACGTATACACACTTCGGGTGAATGAAAAGAGCGATATCTACAGCTTTGGTG 2693
Query 2678 TGGTGCTTTTGGAACTGGTTACAGGGAAGCAACCAACGGATCCAGAACTCGGAAATAAAG 2737
||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||||
Sbjct 2694 TGGTGCTTTTGGAACTGGTTACAGGGAAGCAACCAACTGATTCAGAACTTGGAGATAAAG 2753
Query 2738 ATATGGCGAAATGGGTGTGCACTACACTTGACAAATGCGGTTTAGAACCCGTGATCGATC 2797
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2754 ATATGGCAAAATGGGTGTGCACTGCACTTGACAAATGCGGTTTAGAACCCGTGATCGATC 2813
Query 2798 CCAAACTCGATCTCAAGTTCAAAGAAGAAATAAGTAAAGTCATTCACATTGGTCTACTCT 2857
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2814 CCAAACTCGATCTCAAGTTCAAAGAAGAAATTAGTAAAGTCATTCACATTGGTCTACTCT 2873
Query 2858 GTACCAGTCCTCTCCCTCTAAACCGACCTTCCATGAGAAAAGTTGTGATCATGCTTCAAG 2917
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2874 GTACGAGTCCTCTCCCTCTAAACAGACCTTCCATGAGAAAAGTTGTGATCATGCTTCAAG 2933
Query 2918 AAGTCTCTGGTGCTGTTTCTTGTAGCAGTCCAAACATATCTAAACGCTCCAAGAGTGGTG 2977
||||||||||||||||| |||||||||||||||||| ||||||||| || || | ||||
Sbjct 2934 AAGTCTCTGGTGCTGTTCCTTGTAGCAGTCCAAACACATCTAAACGATCTAAAACCGGTG 2993
Query 2978 GGAAACTCTCGCCTTACTACACGGAAGACTTGAACAGCGTTTGAACATTCCAATATGGGC 3037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2994 GGAAACTCTCGCCTTACTACACGGAAGACTTGAACAGCGTTTGAACATTCCAATATGGGC 3053
Query 3038 TGAGATTGGGTT-GGGCCCGG-ATAGCAATTTGATGCTATGATGCTAGGTGAATTGTAAG 3095
||||| | |||| ||||| || |||||||||||||| |||||||||||||||| ||||||
Sbjct 3054 TGAGAATCGGTTTGGGCCGGGGATAGCAATTTGATGTTATGATGCTAGGTGAACTGTAAG 3113
Query 3096 AAAGATATCAGAAACAGAAAAGTGGAGCTTTCTGATTAGGTAATTGCTCTTAATGCTAAT 3155
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3114 AAAGATATCAAAAACAGAAAAGTGGAGCTTTCTGATTAGGTAATTGCTCTTAAAGCTAAT 3173
Query 3156 ATAAAGTTATAGTTTGGATATTAGTTTTAAATTAATGCAATGTTTGCAATATTTGGTGGT 3215
||||||||||| ||||||||||| |||||| |||| ||||| ||||||||||||||||||
Sbjct 3174 ATAAAGTTATAATTTGGATATTAATTTTAATTTAACGCAATATTTGCAATATTTGGTGGT 3233
Query 3216 TGGTCCACCC 3225
||||||||||
Sbjct 3234 TGGTCCACCC 3243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160433883714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5