BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491924
Length=515
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 647 0.0
> AT4G28460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant
structures; EXPRESSED DURING: LP.04 four leaves visible, 4
anthesis, petal differentiation and expansion stage; Has 8 Blast
hits to 8 proteins in 3 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:14065997-14066543
FORWARD LENGTH=547
Length=547
Score = 647 bits (350), Expect = 0.0
Identities = 454/499 (91%), Gaps = 27/499 (5%)
Strand=Plus/Plus
Query 37 GTACAACATAAAGAAGAGAAAGTAAAATACGATGAGAAGAGTTAGTTGGTCTACTGTTTT 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 GTACAACATAAAGAAGAGAAAGTAAAATACGATGAGAAGAGTTAGTTGGTCTACTGTTTT 115
Query 97 GATTGTGGTTGTGATGGTGGCGTTGTTTTTCGTAGAACACGTAGTGGTTCCGGCTGCGGC 156
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 116 GATTGTGGTTGTGATGGTGTCGTTGTTTTTCGTAGAACACGTGGTGGTTCCGGCTGCGGC 175
Query 157 GGGGAGGGTTCTTACGGAAAAATCGGGAGATGGAAGTGCGACGCTGACGGTGGAGAAGAT 216
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 176 GGGGAGGGTTCTTACTGAAAAATCGGGAGATGGAAGTGCGACTATGACGGTGGAGAAGAT 235
Query 217 GAAATCGACGGTGGATTCTTGGTTTCAGCGTTTGGCGTCGGGTCCAAGTCCAAGAGGTCG 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GAAATCGACGGTGGATTCTTGGTTTCAGCGTTTGGCGTCGGGTCCAAGTCCAAGAGGTCG 295
Query 277 CGGCCATTGAATTT-CC-------CTTT------C-TGGCCTGAGGAGATTAATTAATCT 321
|||||||| ||||| || |||| | ||||| ||||||||||||||||||
Sbjct 296 CGGCCATTAAATTTTCCTTTTTTACTTTTTTTTTCCTGGCCGGAGGAGATTAATTAATCT 355
Query 322 CGATATACCC-ATGTGTATACCACAACAAACGGTGAAAATTGTATTCCATTCATTTGTTT 380
|||||||||| || ||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 356 CGATATACCCCATATGTATACCAGAACAAACGGTGAAAACTGTATTCCATTCATTTATTT 415
Query 381 CATTAttt-ttttttt---CTTTAGACAAAGTTCATATATTTAGTGACAGAAACTAAAAC 436
|||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 416 CATTATTTGTTTTTTTTTTCTTTAGGCAAAGTTCATATAGTTAGTGACAGAAACTAAAAC 475
Query 437 CCTCAATATACAATTATACATGTACATGATTATACTTTTGTTGGTTGCTAATTTTAATAA 496
|||||||||||| | |||||| | | || | |||||| |||||||||||||||||||
Sbjct 476 CCTCAATATACA-TG-TACATG-AT-T--TT-TGCTTTTGCTGGTTGCTAATTTTAATAA 528
Query 497 GATTTCATACTTCTGGTTT 515
||||| |||||||||||||
Sbjct 529 GATTTTATACTTCTGGTTT 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24614732030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5