BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491927 Length=1469 Score E Sequences producing significant alignments: (Bits) Value AT4G28430.1 | Symbols: | Reticulon family protein | chr4:14057... 1838 0.0 > AT4G28430.1 | Symbols: | Reticulon family protein | chr4:14057792-14059864 FORWARD LENGTH=1520 Length=1520 Score = 1838 bits (995), Expect = 0.0 Identities = 1321/1469 (90%), Gaps = 60/1469 (4%) Strand=Plus/Plus Query 24 ACTACTACTACTACGCCTCCATCTCTCCGTTCGAACCCTAAATCCGCGTTGCGTCTCTCT 83 ||| ||||||| || ||||| |||||||||||||| ||| |||||| |||||||| || Sbjct 59 ACT-CTACTACCACACCTCCTTCTCTCCGTTCGAATACTAGATCCGCTTTGCGTCTAGCT 117 Query 84 CGAAACAACAACACTCTCGTCAAATCTCACATTCCATCTCTCGATTTGGTTCTATCGTCT 143 ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| |||| Sbjct 118 CGAAACAACAAAACTCTCGTAAAATCTCACATTCCATCTCTCGATTTGGTTTTATTGTCT 177 Query 144 CCGAAG---AACAACGGTACTCCTTACCCATCACCTGTTTCTCTCAATTCTCCATCTTCT 200 |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 178 CCGAAGAACAACAACGGTACTCCTTACCCATCACCTGTTTCTCTCAGTTCACCATCTTCT 237 Query 201 CCTGTTACTCTTCGTGAAATCCTTCTTTTATCTCCTTCTCCTCTTCGTAAATCGAGAACC 260 ||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||| Sbjct 238 CCTGTTACTCTTCGTGAGATTCTCCTTTTATCTCCTTCCCCTCTTCGTAAATCGAGAACC 297 Query 261 CGTTTGAGTAATCGGTTCGATATGGAAGCTGCCGAGGCTGCTGTGGCCGCACGACGGTGT 320 ||||| || ||||||||||||||||||||||| |||||||||||| | ||||||||| || Sbjct 298 CGTTTAAGCAATCGGTTCGATATGGAAGCTGCGGAGGCTGCTGTGACGGCACGACGGAGT 357 Query 321 AAGAAGAAAGGAGGGCAAAATGGTCTTTTGACTTGTGCCTCGCCGTCGCCGAGAAATTTC 380 |||| ||| |||||||||||||||| || ||| ||||||||||||||||| |||||| Sbjct 358 AAGACGAAGGGAGGGCAAAATGGTC--TT---TTG-GCCTCGCCGTCGCCGAGGAATTTC 411 Query 381 CGGAGGTCGAGACTAAGGTC----G-GA--G--GATACAAAGGAAAATACGGAGCCAATT 431 |||||||||||||||||||| | || | ||||||||||||||||||||||||||| Sbjct 412 CGGAGGTCGAGACTAAGGTCGGAGGCGATGGTAGATACAAAGGAAAATACGGAGCCAATT 471 Query 432 GTTGTCATGACCGATGaaaaaaaacaaaaaCC-GAGGAAACAGAAGAAGACT-GGTCGAT 489 |||||| ||||||||||||| |||| |||||| |||||||||||||||| | ||||||| Sbjct 472 GTTGTCGTGACCGATGAAAAGAAAC-AAAACCAGAGGAAACAGAAGAAG-TTGGGTCGAT 529 Query 490 CTAAGAAGGAGAAGCACAGTTCTGTTCCTCTGTTACCTTCTCCTAGTCCATCTTCAGATC 549 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 530 CTAAGAAGGAGAAGCACAGTTCTGTTCCTCTGTTAGCTTCTCCTAGTCCATCTTCAGATC 589 Query 550 AAAATGAAGATGTTTGTCAAAGTGATTTAGAGCGGATTAGAGAGAACATCAGCGATTTGA 609 || | |||||||||||||| ||||||||||||||||||||||||| || |||||||||| Sbjct 590 AACCTCAAGATGTTTGTCAAGGTGATTTAGAGCGGATTAGAGAGAATATAAGCGATTTGA 649 Query 610 TTATGTGGAAAGATGTTGCGAAATCAACACTTTGGTTTGGTTTTGGATGTATATGTTTCC 669 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 650 TTATGTGGAGAGATGTTGCGAAATCAACACTTTGGTTTGGTTTTGGCTGTATATGTTTCC 709 Query 670 TATCTTCTTGCTTTGCTGCTAAAGGATTTAACTTCAGTGTTTTCTCAGCGATCTCCTATC 729 ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 710 TATCTACTTGCTTTGCTGCTAAAGGATTTAACTTTAGTGTTTTCTCAGCGATCTCCTATC 769 Query 730 TTGGGCTCTTGTTTCTTGGGGTATCGTTCTTGTCAAACACTCTTCGCCAAAGGGCAACCG 789 |||| || ||||||||||||||||||||||||||||| |||||||||||||||| || | Sbjct 770 TTGGACTTTTGTTTCTTGGGGTATCGTTCTTGTCAAATACTCTTCGCCAAAGGGTTACTG 829 Query 790 AAGAAGCCCGGAGAGAGCTTAAATTGACTGAAGAGGATGTATTACGGATAGCTAGACGGA 849 ||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||| | Sbjct 830 AAGAAGCGCGGAGAGAGCTTAAATTGAGTGAAGATGATGTATTACGAATAGCTAGACGAA 889 Query 850 TGCTTCCCATCACCAATTTAGCGATATCAAAGACGAGCGAGCTTTTCTCTGGCGAACCAG 909 |||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||| Sbjct 890 TGCTTCCCATCACCAATTTAGCAATTTCAAAGACGAGTGAGCTTTTCTCTGGTGAACCAG 949 Query 910 CAATGACACTCAAAGTGGCACCCTTTGTTCTAATGGGAGCTGAGTATGGCTACCTCATAA 969 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 950 CAATGACACTCAAAGTGGCACCTTTTGTTCTAATGGGAGCTGAGTATGGTTACCTCATAA 1009 Query 970 CATTGTGGAGGTTATGTGCATTTGGTTTCTTCCTTAGCTTCACCATTCCAAAGCTATATT 1029 |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 1010 CATTGTGGAGATTATGTGCTTTTGGTTTCTTCCTTAGCTTCACTATTCCAAAGCTATATT 1069 Query 1030 CATGTTATGCAAGTCAGATTAACCAAAAAGTTGAAAGTGCACAGAAG-AGAATTGTTGAA 1088 ||||||| ||||||||| |||||||||||||||| ||||||| ||| ||| |||||||| Sbjct 1070 CATGTTACGCAAGTCAGCTTAACCAAAAAGTTGAGTGTGCACA-AAGGAGATTTGTTGAA 1128 Query 1089 GCTTGGGGAGTTTGCACACACAAGAAGTTTGTGGCTGGCTCTGCAGTTACTGCATTCTGG 1148 |||||||||||||||||||||||||| || || || |||||||||||||||||||||||| Sbjct 1129 GCTTGGGGAGTTTGCACACACAAGAAATTCGTAGCAGGCTCTGCAGTTACTGCATTCTGG 1188 Query 1149 AACCTGACTTCTCTCAAGACCCGTTTTATCGCAGTGTTTATCATTGTGGTAGTAATCAGA 1208 || || ||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct 1189 AATCTAACTTCTCTCAAGACCCGTTTTATTGCAGTGTTTATCATAGTAGTAGTAATCAGA 1248 Query 1209 TACAGACGCCAGAATCTACAGTTAGATTCCGAGGATGAGGTGGAGAAG---CAACAAGAA 1265 |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 1249 TACAGACGACAGAATCTACAGTTAGATTCCGAGGATGAGGAGGAGAAGAAGCAACAAGAA 1308 Query 1266 CAAACTCACCCGGAGCAACAAGAATCGCCGGAGGAAAAGTCACCTTCACCTTCACCATCA 1325 |||||||||||||||||||| ||||||||||||| |||||| || |||||| Sbjct 1309 AAAACTCACCCGGAGCAACAAAAATCGCCGGAGGATAAGTCA-----AC-TTCACC---- 1358 Query 1326 CCGCCGCCGCCGCCACCGCGGTCAGCAGAAGAAGAGCAAGCGTTGGTGGTGGTTGCAGAA 1385 || | | | | || | | |||||| | |||||||||||| | ||||||||| Sbjct 1359 --GC-G--GTC---A--GCAG--A--AGAAGA-G--CAAGCGTTGGTGCTAGTTGCAGAA 1401 Query 1386 ACCGAAGCACCAAAGAAGCTTTA---GTCTAGTCACTAGTGTCTTTTCAGTTTCCACCTG 1442 ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 1402 ACCAAAGCACCAAAGAAGCTTTATTAGTCTAGTCACTAGTGTCTTTTCAGTATCCACCTG 1461 Query 1443 T--AATAAAATTTCACATTTACGTAATAA 1469 | ||||| |||||||||||||||||||| Sbjct 1462 TGTAATAATATTTCACATTTACGTAATAA 1490 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72439386435 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5