BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491927
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28430.1 | Symbols: | Reticulon family protein | chr4:14057... 1838 0.0
> AT4G28430.1 | Symbols: | Reticulon family protein | chr4:14057792-14059864
FORWARD LENGTH=1520
Length=1520
Score = 1838 bits (995), Expect = 0.0
Identities = 1321/1469 (90%), Gaps = 60/1469 (4%)
Strand=Plus/Plus
Query 24 ACTACTACTACTACGCCTCCATCTCTCCGTTCGAACCCTAAATCCGCGTTGCGTCTCTCT 83
||| ||||||| || ||||| |||||||||||||| ||| |||||| |||||||| ||
Sbjct 59 ACT-CTACTACCACACCTCCTTCTCTCCGTTCGAATACTAGATCCGCTTTGCGTCTAGCT 117
Query 84 CGAAACAACAACACTCTCGTCAAATCTCACATTCCATCTCTCGATTTGGTTCTATCGTCT 143
||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 118 CGAAACAACAAAACTCTCGTAAAATCTCACATTCCATCTCTCGATTTGGTTTTATTGTCT 177
Query 144 CCGAAG---AACAACGGTACTCCTTACCCATCACCTGTTTCTCTCAATTCTCCATCTTCT 200
|||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 178 CCGAAGAACAACAACGGTACTCCTTACCCATCACCTGTTTCTCTCAGTTCACCATCTTCT 237
Query 201 CCTGTTACTCTTCGTGAAATCCTTCTTTTATCTCCTTCTCCTCTTCGTAAATCGAGAACC 260
||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||
Sbjct 238 CCTGTTACTCTTCGTGAGATTCTCCTTTTATCTCCTTCCCCTCTTCGTAAATCGAGAACC 297
Query 261 CGTTTGAGTAATCGGTTCGATATGGAAGCTGCCGAGGCTGCTGTGGCCGCACGACGGTGT 320
||||| || ||||||||||||||||||||||| |||||||||||| | ||||||||| ||
Sbjct 298 CGTTTAAGCAATCGGTTCGATATGGAAGCTGCGGAGGCTGCTGTGACGGCACGACGGAGT 357
Query 321 AAGAAGAAAGGAGGGCAAAATGGTCTTTTGACTTGTGCCTCGCCGTCGCCGAGAAATTTC 380
|||| ||| |||||||||||||||| || ||| ||||||||||||||||| ||||||
Sbjct 358 AAGACGAAGGGAGGGCAAAATGGTC--TT---TTG-GCCTCGCCGTCGCCGAGGAATTTC 411
Query 381 CGGAGGTCGAGACTAAGGTC----G-GA--G--GATACAAAGGAAAATACGGAGCCAATT 431
|||||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct 412 CGGAGGTCGAGACTAAGGTCGGAGGCGATGGTAGATACAAAGGAAAATACGGAGCCAATT 471
Query 432 GTTGTCATGACCGATGaaaaaaaacaaaaaCC-GAGGAAACAGAAGAAGACT-GGTCGAT 489
|||||| ||||||||||||| |||| |||||| |||||||||||||||| | |||||||
Sbjct 472 GTTGTCGTGACCGATGAAAAGAAAC-AAAACCAGAGGAAACAGAAGAAG-TTGGGTCGAT 529
Query 490 CTAAGAAGGAGAAGCACAGTTCTGTTCCTCTGTTACCTTCTCCTAGTCCATCTTCAGATC 549
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 530 CTAAGAAGGAGAAGCACAGTTCTGTTCCTCTGTTAGCTTCTCCTAGTCCATCTTCAGATC 589
Query 550 AAAATGAAGATGTTTGTCAAAGTGATTTAGAGCGGATTAGAGAGAACATCAGCGATTTGA 609
|| | |||||||||||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct 590 AACCTCAAGATGTTTGTCAAGGTGATTTAGAGCGGATTAGAGAGAATATAAGCGATTTGA 649
Query 610 TTATGTGGAAAGATGTTGCGAAATCAACACTTTGGTTTGGTTTTGGATGTATATGTTTCC 669
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 650 TTATGTGGAGAGATGTTGCGAAATCAACACTTTGGTTTGGTTTTGGCTGTATATGTTTCC 709
Query 670 TATCTTCTTGCTTTGCTGCTAAAGGATTTAACTTCAGTGTTTTCTCAGCGATCTCCTATC 729
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 710 TATCTACTTGCTTTGCTGCTAAAGGATTTAACTTTAGTGTTTTCTCAGCGATCTCCTATC 769
Query 730 TTGGGCTCTTGTTTCTTGGGGTATCGTTCTTGTCAAACACTCTTCGCCAAAGGGCAACCG 789
|||| || ||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 770 TTGGACTTTTGTTTCTTGGGGTATCGTTCTTGTCAAATACTCTTCGCCAAAGGGTTACTG 829
Query 790 AAGAAGCCCGGAGAGAGCTTAAATTGACTGAAGAGGATGTATTACGGATAGCTAGACGGA 849
||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||| |
Sbjct 830 AAGAAGCGCGGAGAGAGCTTAAATTGAGTGAAGATGATGTATTACGAATAGCTAGACGAA 889
Query 850 TGCTTCCCATCACCAATTTAGCGATATCAAAGACGAGCGAGCTTTTCTCTGGCGAACCAG 909
|||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||
Sbjct 890 TGCTTCCCATCACCAATTTAGCAATTTCAAAGACGAGTGAGCTTTTCTCTGGTGAACCAG 949
Query 910 CAATGACACTCAAAGTGGCACCCTTTGTTCTAATGGGAGCTGAGTATGGCTACCTCATAA 969
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 950 CAATGACACTCAAAGTGGCACCTTTTGTTCTAATGGGAGCTGAGTATGGTTACCTCATAA 1009
Query 970 CATTGTGGAGGTTATGTGCATTTGGTTTCTTCCTTAGCTTCACCATTCCAAAGCTATATT 1029
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1010 CATTGTGGAGATTATGTGCTTTTGGTTTCTTCCTTAGCTTCACTATTCCAAAGCTATATT 1069
Query 1030 CATGTTATGCAAGTCAGATTAACCAAAAAGTTGAAAGTGCACAGAAG-AGAATTGTTGAA 1088
||||||| ||||||||| |||||||||||||||| ||||||| ||| ||| ||||||||
Sbjct 1070 CATGTTACGCAAGTCAGCTTAACCAAAAAGTTGAGTGTGCACA-AAGGAGATTTGTTGAA 1128
Query 1089 GCTTGGGGAGTTTGCACACACAAGAAGTTTGTGGCTGGCTCTGCAGTTACTGCATTCTGG 1148
|||||||||||||||||||||||||| || || || ||||||||||||||||||||||||
Sbjct 1129 GCTTGGGGAGTTTGCACACACAAGAAATTCGTAGCAGGCTCTGCAGTTACTGCATTCTGG 1188
Query 1149 AACCTGACTTCTCTCAAGACCCGTTTTATCGCAGTGTTTATCATTGTGGTAGTAATCAGA 1208
|| || ||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1189 AATCTAACTTCTCTCAAGACCCGTTTTATTGCAGTGTTTATCATAGTAGTAGTAATCAGA 1248
Query 1209 TACAGACGCCAGAATCTACAGTTAGATTCCGAGGATGAGGTGGAGAAG---CAACAAGAA 1265
|||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1249 TACAGACGACAGAATCTACAGTTAGATTCCGAGGATGAGGAGGAGAAGAAGCAACAAGAA 1308
Query 1266 CAAACTCACCCGGAGCAACAAGAATCGCCGGAGGAAAAGTCACCTTCACCTTCACCATCA 1325
|||||||||||||||||||| ||||||||||||| |||||| || ||||||
Sbjct 1309 AAAACTCACCCGGAGCAACAAAAATCGCCGGAGGATAAGTCA-----AC-TTCACC---- 1358
Query 1326 CCGCCGCCGCCGCCACCGCGGTCAGCAGAAGAAGAGCAAGCGTTGGTGGTGGTTGCAGAA 1385
|| | | | | || | | |||||| | |||||||||||| | |||||||||
Sbjct 1359 --GC-G--GTC---A--GCAG--A--AGAAGA-G--CAAGCGTTGGTGCTAGTTGCAGAA 1401
Query 1386 ACCGAAGCACCAAAGAAGCTTTA---GTCTAGTCACTAGTGTCTTTTCAGTTTCCACCTG 1442
||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1402 ACCAAAGCACCAAAGAAGCTTTATTAGTCTAGTCACTAGTGTCTTTTCAGTATCCACCTG 1461
Query 1443 T--AATAAAATTTCACATTTACGTAATAA 1469
| ||||| ||||||||||||||||||||
Sbjct 1462 TGTAATAATATTTCACATTTACGTAATAA 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72439386435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5