BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491928
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28420.2 | Symbols: | Tyrosine transaminase family protein ... 2170 0.0
> AT4G28420.2 | Symbols: | Tyrosine transaminase family protein
| chr4:14055661-14057592 FORWARD LENGTH=1559
Length=1559
Score = 2170 bits (1175), Expect = 0.0
Identities = 1321/1393 (95%), Gaps = 4/1393 (0%)
Strand=Plus/Plus
Query 1 TACTCCCAGCAAATTTATTAACAATGAACCACAACAGCAACCTCGTTCTTCCTGCCTATC 60
|||||||| | ||| |||| ||||||||||||||||||||||||||||||||| || |||
Sbjct 4 TACTCCCAACGAATATATTCACAATGAACCACAACAGCAACCTCGTTCTTCCTTCCCATC 63
Query 61 AAACCGAGACGCAGACGCAAAATGAGACCGATATCAGCGTTTGGCGTTTCAGGGGAAGCG 120
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 64 AAACCGAGACGCAGACGCAAGATGAAACCGATATCAGCGTTTGGCGTTTCAGGGGAAGCG 123
Query 121 AC-ACGGCAGCTAAAGCCTCCAGCGTCACTATGAGAGTCATCGTCTACAAGCTCTTCGAT 179
|| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 124 ACAAC-GCAGCCAAAGCCTCCAGCGTCACGATGAGAGTCATCGTCTACAAGCTCTTCGAT 182
Query 180 GAATGCAGCCTGGATGTGAAAAAGCCTCTTTTACCCCTTGCTCACGGTGACCCTTCTGTG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GAATGCAGCCTGGATGTGAAAAAGCCTCTTTTACCCCTTGCTCACGGTGACCCTTCTGTC 242
Query 240 TACCCTTGCTACCGCACCTCTATCCTGGTCGAGAACGCCGTCGTCGACGTCATCCGCTCC 299
|||||||| ||||||||||| ||||| |||||||||||||| ||||||||| | ||||||
Sbjct 243 TACCCTTGTTACCGCACCTCCATCCTCGTCGAGAACGCCGTGGTCGACGTCCTTCGCTCC 302
Query 300 GGCAAGGGCAACTCTTATGGCCCCGCCGCCGGAATCCTCCCTGCCAGACAGGCGGTTGCT 359
|||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 303 GGCAAGGGTAACTCTTACGGCCCCGCCGCCGGAATTCTCCCAGCCAGACAGGCGGTCGCA 362
Query 360 GATTACGTGAACCGAGACTTGACGAACAAGGTAAAGCCTAATGATGTATTCATAACTGTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GATTACGTGAACCGAGACTTGACGAACAAGGTAAAGCCTAATGATGTATTCATAACTGTC 422
Query 420 GGATGCAACCAAGGGATAGAAGTCGTGCTTCAATCGCTGGCTCGGCCAAACGCTAACATC 479
||||||||||||||||||||||| || ||||| || |||||||| |||||||||||||||
Sbjct 423 GGATGCAACCAAGGGATAGAAGTAGTTCTTCAGTCACTGGCTCGACCAAACGCTAACATC 482
Query 480 CTTCTCCCACGGCCTAGTTATCCTCACTACGAGGCTCGTGCCGTCTACAGTGGGCTCGGG 539
||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 483 CTTCTCCCAAGGCCTAGTTACCCTCACTACGAGGCTCGTGCCGTCTACAGTGGACTCGAG 542
Query 540 GTCCGCAAGTTTGATCTCCTTCCGGAGAAAGAATGGGAGATTGATCTCCCAGGTATCGAA 599
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 543 GTCCGCAAGTTCGATCTCCTTCCAGAGAAAGAATGGGAGATTGATCTCCCAGGCATCGAA 602
Query 600 GCCATGGCAGACGAGAACACTGTCGCGATGGTTATCATAAACCCTAACAACCCCTGTGGA 659
||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 603 GCCATGGCAGATGAGAACACAGTTGCAATGGTTATCATAAACCCTAACAACCCCTGTGGA 662
Query 660 AATGTTTACTCTTACGATCATCTTAAGAAGGTGGCGGAGACGGCTAAGAAGCTTGGAATA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 663 AATGTTTACTCTTACGATCATCTTAAGAAGGTGGCGGAGACGGCTAAGAAGCTGGGAATA 722
Query 720 ATGGTGATCACAGACGAAGTTTATTGCCAGACAATCTTCGGAGACAACCCTTTTGTTCCA 779
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 723 ATGGTAATCACAGACGAAGTTTATTGCCAAACAATCTTCGGAGACAAACCTTTTGTCCCA 782
Query 780 ATGGGGGAGTTTTCTTCGATAGCTCCGGTTATCACTTTGGGCGGTATATCGAAAGGATGG 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 783 ATGGGGGAGTTTTCTTCGATAACTCCGGTTATCACTTTGGGCGGTATATCGAAAGGATGG 842
Query 840 ATTGTTCCTGGTTGGAGAATTGGCTGGACCGTTTTGAATGACCCTAAAGGAATTTTCAAA 899
|||||||||||||||||||||||||||| || |||||||||||| | ||||||| ||||
Sbjct 843 ATTGTTCCTGGTTGGAGAATTGGCTGGATCGCTTTGAATGACCCCAGAGGAATTCTCAAG 902
Query 900 TCCACAGGGATGGTACAGTCCATCCAACAGAATCTTGACATAACTCCAGATGCTACAACT 959
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 903 TCCACAGGGATGGTACAGTCCATTCAACAGAACCTTGACATAACTCCAGATGCTACAACT 962
Query 960 ATTGTTCAGGCTGCACTTCCTGAGATTCTAGGGAAAGCGAATAAAGAGATGTTTGCGAAG 1019
|||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| |||
Sbjct 963 ATTGTTCAAGCTGCACTTCCTGAGATTTTAGGGAAAGCGAATAAAGAGTTGTTTGCCAAG 1022
Query 1020 AAGAATTCGATATTGAAACAGAACGTGGAATTGGTTTGCGATAGGCTTAAGGACATTCCT 1079
||||||||||| ||||||| |||||||||||||| || |||||||| ||||| ||||||
Sbjct 1023 AAGAATTCGATGCTGAAACAAAACGTGGAATTGGTCTGTGATAGGCTCAAGGAGATTCCT 1082
Query 1080 TGCTTGGTCTGCAACAAGAAACCTGAGTCATGCACTTACTTATTGACGAAACTGAAGCTT 1139
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1083 TGCTTGGTCTGCAACAAGAAACCTGAGTCATGCACTTACTTATTGACGAAGCTGAAGCTT 1142
Query 1140 CCATTGTTGGAGGACATAGAAGACGACATGGATTTCTGTATGAAGCTAGCCAAAGAAGAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CCATTGTTGGAGGACATAGAAGACGACATGGATTTCTGTATGAAGCTAGCCAAAGAAGAA 1202
Query 1200 AACCTCGTCCTT-CTACCAGGAGTGGCTTTGGGATTGAAGAACTGGATAAGGATAACAAT 1258
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 AACCTCGT-CTTACTACCAGGAGTGGCTTTGGGATTGAAGAACTGGATAAGGATAACAAT 1261
Query 1259 TGGAGTAGAAGCTCAGATGCTGGAAGATGCACTTGAGAGGCTCAACGGTTTCTGCAAACG 1318
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1262 TGGAGTAGAAGCTCAGATGCTGGAAGATGCACTTGAGAGGCTCAATGGCTTCTGCAAACG 1321
Query 1319 CCATCTCAAGAAAACAGAGTCTTCTTTTCAAGCTCTGAGCAATGGCAAAATCTAAACCAC 1378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CCATCTCAAGAAAACAGAATCTTCTTTTCAAGCTCTGAGCAATGGCAAAATCTAAACCAC 1381
Query 1379 TCATCTATAGAGA 1391
|||||||||||||
Sbjct 1382 TCATCTATAGAGA 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5