BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491931
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28400.1 | Symbols: | Protein phosphatase 2C family protein... 1476 0.0
AT2G20630.2 | Symbols: PIA1 | PP2C induced by AVRRPM1 | chr2:88... 654 0.0
AT4G28405.1 | Symbols: | Expressed protein | chr4:14050134-140... 207 1e-52
> AT4G28400.1 | Symbols: | Protein phosphatase 2C family protein
| chr4:14048292-14050335 FORWARD LENGTH=1276
Length=1276
Score = 1476 bits (799), Expect = 0.0
Identities = 986/1070 (92%), Gaps = 38/1070 (4%)
Strand=Plus/Plus
Query 131 CACAGAGACAGAGGAATCGTCTCAAAGCTTTTTCTCAGAAATGGCAGGCAGTAATATTCT 190
||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 170 CACAGAGACAGAGGAATAGTCTCAAAAC--TTTCTCAGAAATGGCAGGCAGTAATATTCT 227
Query 191 CCATAAGATTAAGTTAAAGGCTGGGTTCTGTGGATCCGCTCCTGACATGGGAAGAGGCAA 250
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 228 CCATAAGATTAAGTTGAAGGCTGGGTTCTGTGGATCTGCTCCTGACATGGGAAGAGGCAA 287
Query 251 AAGCAAGATGTGGAAGAACATCACCCACGGTTTTCACTGTGTGAAGGGCAAGTCCAGCCA 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AAGCAAGATGTGGAAGAACATCACCCACGGTTTTCACTGTGTGAAGGGCAAGTCCAGCCA 347
Query 311 TCCGATGGAGGATTATGTAGTGTCTGAATTCAAGAAACTTGAAGGGCATGAATTGGGTTT 370
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 348 TCCGATGGAGGACTATGTAGTGTCTGAATTCAAGAAACTTGAAGGTCATGAATTGGGTTT 407
Query 371 GTTTGCTATCTTTGATGGTCACTTGGGGCATGATGTGGCTAAATACTTGCAGACTAATCT 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GTTTGCTATCTTTGATGGTCACTTGGGGCATGATGTGGCTAAATACTTGCAGACTAATCT 467
Query 431 CTTTGACAACATTCTTAAAGAGAAGGATTTTTGGACTGACACAGAGAATGCTATAAGGAA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CTTTGACAACATTCTTAAAGAGAAGGATTTTTGGACTGACACAGAGAATGCTATAAGGAA 527
Query 491 TGCGTACAGATCAACAGATGCTGTGATATTGCAGCAGTCCCTTAAGCTTGGTAAAGGCGG 550
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 528 TGCCTACAGATCAACAGATGCCGTGATATTGCAGCAGTCCCTTAAGCTTGGTAAAGGCGG 587
Query 551 ATCAACCGCTGTAACCGGAATTTTGATTGATGGTCAAAAGCTAGTTGTTGCTAATGTTGG 610
|||||| |||||||| |||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 588 ATCAACAGCTGTAACGGGAATTCTAATTGATGGTAAAAAGCTAGTTGTTGCTAATGTTGG 647
Query 611 AGACTCCAGAGCAGTGATGTCTAAGAATGGTGTTGCGCATCAGCTCTCAGTCGATCATGA 670
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 648 AGACTCCAGAGCAGTGATGTCTAAGAATGGTGTTGCGCATCAGCTATCTGTCGATCATGA 707
Query 671 ACCAAGCAAGGAGAAAAAAGAAATAGAGAGCCGAGGCGGCTTTGTATCCAATATTCCAGG 730
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 708 ACCAAGCAAGGAGAAAAAAGAAATAGAGAGCCGAGGTGGCTTTGTGTCAAATATTCCAGG 767
Query 731 GGATGTTCCACGAGTTGATGGACAGTTAGCGGTTGCAAGAGCATTTGGAGATAAGAGCTT 790
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GGATGTTCCACGAGTGGATGGACAGTTAGCGGTTGCAAGAGCATTTGGAGATAAGAGCTT 827
Query 791 AAAGATACATCTGAGCTCAGAACCGGACATAACACACCAGACAATTGATGATCACACTGA 850
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 AAAGTTACATCTGAGCTCAGAACCGGACATAACACACCAGACAATTGATGATCACACTGA 887
Query 851 ATTCATCCTTTTTGCCAGCGATGGTATTTGGAAGGCAACCAGTTTCTGGACCACTTCTTC 910
|||||||||||| || ||||||||||||||||| | | | | | |||| |
Sbjct 888 ATTCATCCTTTTCGCAAGCGATGGTATTTGGAAAGTATT-A-T--CAA-ACCAAGAAG-C 941
Query 911 TAACATGATGGT--CAAGAGTATCAAAGATCCGCATGCAGCTGCAAAGCACTTGATAGAG 968
||||| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 942 GGT--TGATGCTATCAAGAGTATCAAAGATCCTCATGCAGCTGCAAAGCACTTGATAGAG 999
Query 969 GAAGCTATATCTAGGAAGAGCAAAGACGACATCTCCTGTATCGTTGTAAAGTTCCACTAA 1028
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1000 GAAGCTATATCTAGGAAGAGCAAAGATGACATCTCATGTATCGTTGTAAAGTTCCACTAA 1059
Query 1029 TCTT-T-TTGT-CT-AT-AA--GTTAC-----C-ATA--T--C-A--A-GTTTGCAAGAT 1067
|||| | || | || || || | || | ||| | | | | ||| |||||||
Sbjct 1060 TCTTCTCTTCTTCTTATCAAAAGCTATTTTGTCTATAAGTTACCATCAAGTT-GCAAGAT 1118
Query 1068 AGAGAAATATATGCTCAAGCTGTGTCTGTAAAA-CCCAGTAATGAGGTTTCCCAGAAGAT 1126
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1119 AGAGAAATATATGCTCAAGCTGTGTCTGTAAAAACCCAGTAATGAGGTTTCCCAGAAGAT 1178
Query 1127 GTAATATATTATGTTAGAAATCGCGACAGCCTTAAGATACAAAACAAAGA 1176
|||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct 1179 GTAATATATTATC---GAAATCGCAACAGCCTTAAGATACAAAAGAAAGA 1225
Score = 89.8 bits (48), Expect = 6e-17
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1 GAACGCGTTGGCAAAGGAGGACGCAGCCGATAAAATGTTACAGTCACCGAGCAGTTCACA 60
|||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 GAACGCGTCCGCATTGGAGGACGCAGCCGATAAAATGTTACAGTCACCGAGCATTTCACA 60
Query 61 TTA 63
|||
Sbjct 61 TTA 63
> AT2G20630.2 | Symbols: PIA1 | PP2C induced by AVRRPM1 | chr2:8896912-8899835
REVERSE LENGTH=1483
Length=1483
Score = 654 bits (354), Expect = 0.0
Identities = 564/664 (85%), Gaps = 20/664 (3%)
Strand=Plus/Plus
Query 232 CTGACATGGGAAGAGGCAAAAGCAAGATGTGGAAGAACATCACCCACGGTTTTCACTGTG 291
|||||| || ||||| |||| |||| |||||||||||||| | ||||||| | ||| ||
Sbjct 237 CTGACACAGGCAGAGGTAAAACCAAGGTGTGGAAGAACATCGCACACGGTTATGACTTTG 296
Query 292 TGAAGGGC-AAGTCCAGCCATCCGATGGAGGATTATGTAGTGTCTGAATTCAAGAAACTT 350
|||| ||| ||| | |||||||||||||||| ||||| |||||||| ||||||||| |
Sbjct 297 TGAAAGGCAAAG-CGGGCCATCCGATGGAGGACTATGTTGTGTCTGAGTTCAAGAAAGTA 355
Query 351 GAAGGGCATGAATTGGGTTTGTTTGCTATCTTTGATGGTCACTTGGGGCATGATGTGGCT 410
|| || ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 356 GACGGCCATGATTTGGGTTTGTTTGCTATCTTTGATGGTCACTTAGGGCATGATGTAGCC 415
Query 411 AAATACTTGCAGACTAATCTCTTTGACAACATTCTTAAAGAGAAGGATTTTTGGACTGAC 470
|| |||||||| || ||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 416 AAGTACTTGCAAACCAATCTCTTTGATAACATACTCAAAGAGAAGGATTTTTGGACTGAT 475
Query 471 ACAG-AGAATGCTATAAGGAATGCGTACAGATCAACAGATGCTGTGATATT-GCAGCAGT 528
|| | | || |||||||||||||| |||| |||||| |||||||||||||| | ||||||
Sbjct 476 AC-GAAAAACGCTATAAGGAATGCATACATATCAACCGATGCTGTGATATTAG-AGCAGT 533
Query 529 CCCTTAAGCTTGGTAAAGGCGGATCAACCGCTGTAACCGGAATTTTGATTGATGGTCAAA 588
| ||||| ||||| ||||| |||||||| |||||||| || ||| |||| ||||| |||
Sbjct 534 CACTTAAACTTGGCAAAGGTGGATCAACGGCTGTAACAGGCATTCTGATAGATGG-GAAA 592
Query 589 A-GCTAGTTG-TTGCTAATGTTGGAGACTCCA-GAGCAGTGATGTCTAAGAATGGTGTTG 645
| ||||| || ||||||| |||||||||| || | ||||||||||| ||||| |||||||
Sbjct 593 ACGCTAG-TGATTGCTAACGTTGGAGACT-CACGTGCAGTGATGTCAAAGAACGGTGTTG 650
Query 646 C-GCATCAGCTCTCAGTCGATCATGAACCAAGCAAGGAGA-AAAAAGAAATAGAGAGCCG 703
| | ||| ||||| || |||||||||||||||||||| | |||| |||||||| |||||
Sbjct 651 CTTC-TCAACTCTCTGTTGATCATGAACCAAGCAAGGA-ACAAAAGGAAATAGAAAGCCG 708
Query 704 AGGCGGCTTTGTATCCAATATTCCAGGGGATGTTCCACGAGTTGATGGACAGTTAGCGGT 763
|| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 709 TGGTGGCTTTGTATCAAATATTCCAGGGGATGTTCCAAGAGTTGATGGACAACTAGCGGT 768
Query 764 TGCAAGAGCATTTGGAGATAAGAGCTTAAAGATACATCTGAGCTCAGAACCGGACATAAC 823
||| || || |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 769 TGCTAGGGCGTTTGGAGATAAGAGCTTAAAGATACATCTGAGCTCAGATCCAGACATAAG 828
Query 824 ACACCAGACA-ATTGATGATCACACTGAATTCATCCTTTTTGCCAGCGATGGTA-TTTGG 881
| || ||| | || ||| || | ||||| || |||||||| || || ||||| | |||||
Sbjct 829 AGACGAGA-ATATCGATCATGAGACTGAGTTTATCCTTTTCGCAAGTGATGG-AGTTTGG 886
Query 882 AAGG 885
||||
Sbjct 887 AAGG 890
> AT4G28405.1 | Symbols: | Expressed protein | chr4:14050134-14050801
REVERSE LENGTH=573
Length=573
Score = 207 bits (112), Expect = 1e-52
Identities = 136/146 (93%), Gaps = 7/146 (5%)
Strand=Plus/Minus
Query 1032 TTTTGTCTATAAGTTACCATATCAAGTTTGCAAGATAGAGAAATATATGCTCAAGCTGTG 1091
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 562 TTTTGTCTATAAGTTACC--ATCAAG-TTGCAAGATAGAGAAATATATGCTCAAGCTGTG 506
Query 1092 TCTGTAAAA-CCCAGTAATGAGGTTTCCCAGAAGATGTAATATATTATGTTAGAAATCGC 1150
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 505 TCTGTAAAAACCCAGTAATGAGGTTTCCCAGAAGATGTAATATATTATC---GAAATCGC 449
Query 1151 GACAGCCTTAAGATACAAAACAAAGA 1176
||||||||||||||||||| |||||
Sbjct 448 AACAGCCTTAAGATACAAAAGAAAGA 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57780827295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5