BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491936
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28370.1 | Symbols: | RING/U-box superfamily protein | chr4... 1814 0.0
AT4G28380.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1814 0.0
> AT4G28370.1 | Symbols: | RING/U-box superfamily protein | chr4:14034654-14041322
FORWARD LENGTH=3919
Length=3919
Score = 1814 bits (982), Expect = 0.0
Identities = 1072/1115 (96%), Gaps = 8/1115 (1%)
Strand=Plus/Minus
Query 25 TATCAACCGCAAAGCATAGCCTTCATCACCATACAAGTCACTCCGCAAACCCTAAACAGC 84
||||||| ||||| ||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 3467 TATCAACAGCAAAACATAGCCTTCACCACCACACAAGTCACTCCACAAACCCTAAACAGC 3408
Query 85 ATCTTCAGCAAGCGTACCGTGCAC-----GCATGGAAGAAGGTAATCTATTCTGATCCAA 139
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3407 ATCTTCAGCAAGCGTACCGTGCACTTAAAGCATGGAAGAAGGTAATCTATTCTGATCCAA 3348
Query 140 AGAACTTAACTGCAGATTGGGTCGGTCCCTCAGTCTGCAGCTACACTGGCATCTTCTGTG 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3347 AGAACTTAACTGCAGATTGGGTCGGTCCCTCAGTCTGCAGCTACACTGGCATCTTCTGTG 3288
Query 200 CCCCATCTCCTTCCGATCCAAACTCTCTAGTTGTTGCCGGAATCGATCTCAATCATGGTG 259
||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3287 CCCCATCCCCTTCCAATCCAAACACTCTAGTTGTTGCCGGAATCGATCTCAATCATGGTG 3228
Query 260 ACATCGCTGGTTTCCTGCCTGAAGCCATTGGCCTTCTCTCTGACCTAGCTCTCATCCATC 319
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3227 ACATTGCTGGTTTCCTGCCTGAAGCCATTGGCCTTCTCTCTGACCTCGCTCTCATCCATC 3168
Query 320 TCAATAGCAATCGCTTCTGTGGCATCCTTCCTCGTTCGTTGGCCAATCTATCGTTACTCT 379
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 3167 TCAATAGCAATCGCTTCTGTGGCATACTTCCTCGTTCGTTTGCCAATCTATCCTTACTCT 3108
Query 380 ATGAGCTTGACCTCAGCAACAACCGCTTTGTAGGTCCTTTTCCGGATGTCGTCCTTGCAC 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3107 ATGAACTTGACCTCAGCAACAACCGCTTTGTAGGTCCTTTTCCGGATGTCGTCCTTGCAC 3048
Query 440 TCCCTTCTCTAAAGTACCTTGACCTTCGTTACAATGAGTTTGAAGGCCCCTTGCCTCCAA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3047 TCCCTTCTCTAAAGTACCTTGACCTTCGTTACAATGAGTTTGAAGGCCCCTTGCCTCCAA 2988
Query 500 AACTCTTCAGCAATCCCCTCGATGCCATTTTTGTGAACAACAACCGGTTAACAAGCCTCA 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2987 AACTCTTCAGCAATCCCCTCGATGCCATTTTTGTGAACAACAACCGGTTAACAAGCCTCA 2928
Query 560 TCCCTAGAGATTTCACAGGAACAACCGCCTCTGTTGTCGTCTTTGCCAACAATGATTTTA 619
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2927 TCCCCCGAGATTTCACAGGAACAACCGCCTCTGTTGTCGTCTTTGCCAACAATGATTTTA 2868
Query 620 GCGGTTGTCTGCCTCCAACCATAGCCCGCTTTGCAGATACCTTGGAAGAGCTTCTCCTAG 679
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2867 GCGGTTGTCTGCCTCCAACCATAGCCCGCTTTGCAGATACCTTAGAAGAGCTTCTCCTAA 2808
Query 680 TCAACTCAAGCTTATCTGGGTGTCTACCCCCGGAAGTCGGGTATCTCTATAAGCTAAGAG 739
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 2807 TCAACTCAAGCTTATCTGGGTGTCTACCCCCCGAAGTCGGGTATCTCTACAAGCTAAGAG 2748
Query 740 TCCTGGACATGAGCTACAACAGTTTTGTTGGTCCTGTACCTTACAGTCTCGCCGGGCTAG 799
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2747 TCCTGGACATGAGCTACAACAGTTTAGTTGGTCCTGTACCTTACAGTCTCGCTGGGCTAG 2688
Query 800 GCCATCTCGAGCAGCTGAATTTGGAACACAACATGTTCACTGGCACTGTCCCTCTTGGAG 859
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2687 GCCATCTCGAGCAGCTAAATCTGGAACACAACATGTTCACTGGCACTGTCCCTCTTGGAG 2628
Query 860 TCTGCGTTTTGCCCAGCTTGCTGAACGTTACCCTCTCTTACAACTATTTCAGTGAAGAAG 919
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2627 TCTGCGTTTTGCCCAGCTTGCTGAACGTTACCGTCTCTTACAACTATTTCAGTGAAGAAG 2568
Query 920 AAGGTATCTGCAGAAACCTGACTTCCAGAGGAATAGCCATCGATGATCGCTACAACTGTC 979
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2567 AAGGTATCTGCAGGAACCTGACTTCCAGAGGAATAGCCATCGATGATCGCTACAACTGTC 2508
Query 980 TGCCTGACAAACCGCTTCAGCGGAGCCAAAAAGTCTGTGATGCTGTGCTTGAGC-CC--A 1036
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| || |
Sbjct 2507 TGCCTGACAAACCGCTTCAGCGTCCCCAAAAAGTCTGTGATGCTGTACTTGAGCACCCCA 2448
Query 1037 TAGACTGCTATGACCACAAATGCTCAGCCATGGCTCCTCTGGTTGCTCCAGCTACCGCAG 1096
||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||||
Sbjct 2447 TAGACTGCTATGACCACGAATGCTCACCCATGGCTCCACTGGTTGCTCCATCTACCGCAG 2388
Query 1097 GACCTTCCATCGCTCCTGGTCCAGCTGACACATAA 1131
|||||||||| ||||||||||||||||||||||||
Sbjct 2387 GACCTTCCATTGCTCCTGGTCCAGCTGACACATAA 2353
> AT4G28380.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr4:14039756-14040931 REVERSE LENGTH=1176
Length=1176
Score = 1814 bits (982), Expect = 0.0
Identities = 1072/1115 (96%), Gaps = 8/1115 (1%)
Strand=Plus/Plus
Query 25 TATCAACCGCAAAGCATAGCCTTCATCACCATACAAGTCACTCCGCAAACCCTAAACAGC 84
||||||| ||||| ||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 62 TATCAACAGCAAAACATAGCCTTCACCACCACACAAGTCACTCCACAAACCCTAAACAGC 121
Query 85 ATCTTCAGCAAGCGTACCGTGCAC-----GCATGGAAGAAGGTAATCTATTCTGATCCAA 139
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 122 ATCTTCAGCAAGCGTACCGTGCACTTAAAGCATGGAAGAAGGTAATCTATTCTGATCCAA 181
Query 140 AGAACTTAACTGCAGATTGGGTCGGTCCCTCAGTCTGCAGCTACACTGGCATCTTCTGTG 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AGAACTTAACTGCAGATTGGGTCGGTCCCTCAGTCTGCAGCTACACTGGCATCTTCTGTG 241
Query 200 CCCCATCTCCTTCCGATCCAAACTCTCTAGTTGTTGCCGGAATCGATCTCAATCATGGTG 259
||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 242 CCCCATCCCCTTCCAATCCAAACACTCTAGTTGTTGCCGGAATCGATCTCAATCATGGTG 301
Query 260 ACATCGCTGGTTTCCTGCCTGAAGCCATTGGCCTTCTCTCTGACCTAGCTCTCATCCATC 319
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 302 ACATTGCTGGTTTCCTGCCTGAAGCCATTGGCCTTCTCTCTGACCTCGCTCTCATCCATC 361
Query 320 TCAATAGCAATCGCTTCTGTGGCATCCTTCCTCGTTCGTTGGCCAATCTATCGTTACTCT 379
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 362 TCAATAGCAATCGCTTCTGTGGCATACTTCCTCGTTCGTTTGCCAATCTATCCTTACTCT 421
Query 380 ATGAGCTTGACCTCAGCAACAACCGCTTTGTAGGTCCTTTTCCGGATGTCGTCCTTGCAC 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ATGAACTTGACCTCAGCAACAACCGCTTTGTAGGTCCTTTTCCGGATGTCGTCCTTGCAC 481
Query 440 TCCCTTCTCTAAAGTACCTTGACCTTCGTTACAATGAGTTTGAAGGCCCCTTGCCTCCAA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TCCCTTCTCTAAAGTACCTTGACCTTCGTTACAATGAGTTTGAAGGCCCCTTGCCTCCAA 541
Query 500 AACTCTTCAGCAATCCCCTCGATGCCATTTTTGTGAACAACAACCGGTTAACAAGCCTCA 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 AACTCTTCAGCAATCCCCTCGATGCCATTTTTGTGAACAACAACCGGTTAACAAGCCTCA 601
Query 560 TCCCTAGAGATTTCACAGGAACAACCGCCTCTGTTGTCGTCTTTGCCAACAATGATTTTA 619
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TCCCCCGAGATTTCACAGGAACAACCGCCTCTGTTGTCGTCTTTGCCAACAATGATTTTA 661
Query 620 GCGGTTGTCTGCCTCCAACCATAGCCCGCTTTGCAGATACCTTGGAAGAGCTTCTCCTAG 679
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 662 GCGGTTGTCTGCCTCCAACCATAGCCCGCTTTGCAGATACCTTAGAAGAGCTTCTCCTAA 721
Query 680 TCAACTCAAGCTTATCTGGGTGTCTACCCCCGGAAGTCGGGTATCTCTATAAGCTAAGAG 739
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 722 TCAACTCAAGCTTATCTGGGTGTCTACCCCCCGAAGTCGGGTATCTCTACAAGCTAAGAG 781
Query 740 TCCTGGACATGAGCTACAACAGTTTTGTTGGTCCTGTACCTTACAGTCTCGCCGGGCTAG 799
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 782 TCCTGGACATGAGCTACAACAGTTTAGTTGGTCCTGTACCTTACAGTCTCGCTGGGCTAG 841
Query 800 GCCATCTCGAGCAGCTGAATTTGGAACACAACATGTTCACTGGCACTGTCCCTCTTGGAG 859
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 842 GCCATCTCGAGCAGCTAAATCTGGAACACAACATGTTCACTGGCACTGTCCCTCTTGGAG 901
Query 860 TCTGCGTTTTGCCCAGCTTGCTGAACGTTACCCTCTCTTACAACTATTTCAGTGAAGAAG 919
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 902 TCTGCGTTTTGCCCAGCTTGCTGAACGTTACCGTCTCTTACAACTATTTCAGTGAAGAAG 961
Query 920 AAGGTATCTGCAGAAACCTGACTTCCAGAGGAATAGCCATCGATGATCGCTACAACTGTC 979
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AAGGTATCTGCAGGAACCTGACTTCCAGAGGAATAGCCATCGATGATCGCTACAACTGTC 1021
Query 980 TGCCTGACAAACCGCTTCAGCGGAGCCAAAAAGTCTGTGATGCTGTGCTTGAGC-CC--A 1036
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| || |
Sbjct 1022 TGCCTGACAAACCGCTTCAGCGTCCCCAAAAAGTCTGTGATGCTGTACTTGAGCACCCCA 1081
Query 1037 TAGACTGCTATGACCACAAATGCTCAGCCATGGCTCCTCTGGTTGCTCCAGCTACCGCAG 1096
||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||||
Sbjct 1082 TAGACTGCTATGACCACGAATGCTCACCCATGGCTCCACTGGTTGCTCCATCTACCGCAG 1141
Query 1097 GACCTTCCATCGCTCCTGGTCCAGCTGACACATAA 1131
|||||||||| ||||||||||||||||||||||||
Sbjct 1142 GACCTTCCATTGCTCCTGGTCCAGCTGACACATAA 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5