BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491939
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 924 0.0
AT4G28340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 791 0.0
> AT4G28330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G28340.1);
Has 48 Blast hits to 48 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14022387-14022987
REVERSE LENGTH=601
Length=601
Score = 924 bits (500), Expect = 0.0
Identities = 562/592 (95%), Gaps = 3/592 (1%)
Strand=Plus/Plus
Query 1 TACCATAACTTTACCAAACCAGACACAGAGTCATAAGATCAGATCTGGTG-T-TCAAATA 58
||||||||||| ||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 1 TACCATAACTTCACCAAACCAGACACAGAATCATAAGATCAGATCTGGTGTTCTCAAATA 60
Query 59 TGGCTGACAAGGAAGAACAAGAGACCATGACCTCGTACAAGCTGTTTTTGAGAGTTATAA 118
|||| || |||||||||| |||||| ||||||||||||||| ||||||||||||||||||
Sbjct 61 TGGCGGATAAGGAAGAACCAGAGACGATGACCTCGTACAAGTTGTTTTTGAGAGTTATAA 120
Query 119 GCAAGAGAAGAACATGGGCTTGTCTGTTTCTTGTAGTCTACGCGATCCTTTTGTCTTCTT 178
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 GCAAGAGAAGAACATGGGCCTGTCTGTTTCTTGTAGTCTACGCGATCCTATTGTCTTCTT 180
Query 179 CATGGAATTCGTTGAATTCGATAGTGAATTGGTACGGAGAGAATCATCAGACATCATCTG 238
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 CATGGAATTCGTTGAATTCAATAGTTAATTGGTACGGAGAGAATCATCAGACATCATCTG 240
Query 239 GTTTGCCTGCGATTTACGCGTCGGTGCTTCTTGGTGCGGTGTTCGGAGTTCTGTCTATGG 298
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 241 GTTTGCCTGCGATTTACGCGTCGGTGCTTCTTGGTGCGGTGTTCGGAGTTTTATCTATGG 300
Query 299 CGGCGGCGCTGTTCATAGCTGTTCCGGCGATCGTTGTGATCTGGATATCGGTGGTGGTGA 358
||||||||||||||||||| || || |||||||| |||||||||||||| ||||||||||
Sbjct 301 CGGCGGCGCTGTTCATAGCCGTGCCTGCGATCGTGGTGATCTGGATATCAGTGGTGGTGA 360
Query 359 CGATGGCGTTCGCCGGAAAATCTAGGAAGAGAGTGGTGATTGAAGGAAGGAAAGTGACGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGATGGCGTTCGCCGGAAAATCTAGGAAGAGAGTGGTGATTGAAGGAAGGAAAGTGACGA 420
Query 419 AAGAGATTGCTGGTTTTGTGTTTAGGGTTCTTCTTAAAGAAGGAAactttgtggctcttc 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGAGATCGCTGGTTTTGTGTTTAGGGTTCTTCTTAAAGAAGGAAACTTTGTGGCTCTTC 480
Query 479 tttgtgctcttcttgcttactttgtcttctttaactcttactcttcatcttcttgATTCG 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGTGCTCTTCTTGCTTACTTCGTCTTCTTTAACTCTTACTCTTCATCTTCTTGATTCG 540
Query 539 ATTTTT-GCAtttttttCATTAACGAAAACATTCACAACTAATATATCGAAA 589
||||| | ||| || ||||||||||||||||||||| ||| ||||| ||||
Sbjct 541 TTTTTTTGAATTCTTGTCATTAACGAAAACATTCACAGCTAGTATATTGAAA 592
> AT4G28340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G28330.1);
Has 46 Blast hits to 46 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14024534-14025655
REVERSE LENGTH=1122
Length=1122
Score = 791 bits (428), Expect = 0.0
Identities = 527/573 (92%), Gaps = 13/573 (2%)
Strand=Plus/Plus
Query 19 CCAGACACAGAGTCATAAGATCAGATCTGGTG-T-TCAAATATGGCTGACAAGGAAGAAC 76
||| ||||||| |||||||| | |||||||| | ||||||||||| || ||||||||||
Sbjct 509 CCA-ACACAGAATCATAAGA--AAATCTGGTGTTCTCAAATATGGCGGATAAGGAAGAAC 565
Query 77 AAGAGACCATGACCTCGTACAAGCTGTTTTTGAGAGTTATAAGCAAGAGAAGAACATGGG 136
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 566 AAGAGACGATGACCTCGTACAAGCTGTTTTTGAGAGTCATAAGCAAGAGGAGAACATGGG 625
Query 137 CT-TGTCTGTTTCTTGTAGTCTACGCGATCCTTTTGTCTTCTTCATGGAATTCGTTGAAT 195
| |||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 626 -TCTGTCTGTTTCTTGTAGTCTACGCGGTCCTTTTGTCTTCTTCAAGAAATTCGTTGAAT 684
Query 196 TCGATAGTGAATTGGTACGGAGAGAATCATCAGACATCATCTGGTTTGCCTGCGATTTAC 255
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 685 TCGATAGTGAATTGGTACGGAGAGAATCATCAGACATCATCTGGTTTGCCTGCTATTTAC 744
Query 256 GCGTCGGTGCTTCTTGGTGCGGTGTTCGGAGTTCTGTCTATGGCGGCGGCGCTGTTCATA 315
|||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 745 GCGTCGGTTCTTCTTGGTGCGGTGTTCGGAGTTCTATCTATGGCGGCAGCTCTGTTCATC 804
Query 316 GCTGTTCCGGCGATCGTTGTGATCTGGATATCGGTGGTGGTGACGATGGCGTTCGCCGGA 375
||||| || |||||||||||||||||||||||||| |||||||| || |||||| ||| |
Sbjct 805 GCTGTGCCAGCGATCGTTGTGATCTGGATATCGGTAGTGGTGACAATAGCGTTCCCCGTA 864
Query 376 AAATCTAGGAAGAGAGTGGTGATTGAAGGAAGGAAAGTGACGAAAGAGATTGCTGGTTTT 435
|| || ||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 865 AAGTCGAGGAAGAAAGTGGTGATTGAAGGAAGGAAAGTGACGAAAGAAATTGCTGGTTAT 924
Query 436 GTGTTTAGGGTTCTTCTTAAAGAAGGAAactttgtggctcttctttgtgctcttcttgct 495
||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 925 GTGTTTAAGGTTCTTCTTAAAGAAGGAAACTTTGTGGCTCTTCTTTGTGCTGTTATTGCT 984
Query 496 tactttgtcttctttaactctta---ctcttcatcttcttgATTC-GATTTTTGCAtttt 551
||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 985 TACTTTGTCTTCTTTAACTCTTATTACTCTTCATCTTCTTGATTCAG-TTTTTGCATTTT 1043
Query 552 tttCATTAACGAAAACATTCACAACTAATATAT 584
| |||||||||||||||||| |||||||||||
Sbjct 1044 GT-CATTAACGAAAACATTCATAACTAATATAT 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5