BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491939 Length=589 Score E Sequences producing significant alignments: (Bits) Value AT4G28330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 924 0.0 AT4G28340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 791 0.0 > AT4G28330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28340.1); Has 48 Blast hits to 48 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14022387-14022987 REVERSE LENGTH=601 Length=601 Score = 924 bits (500), Expect = 0.0 Identities = 562/592 (95%), Gaps = 3/592 (1%) Strand=Plus/Plus Query 1 TACCATAACTTTACCAAACCAGACACAGAGTCATAAGATCAGATCTGGTG-T-TCAAATA 58 ||||||||||| ||||||||||||||||| |||||||||||||||||||| | ||||||| Sbjct 1 TACCATAACTTCACCAAACCAGACACAGAATCATAAGATCAGATCTGGTGTTCTCAAATA 60 Query 59 TGGCTGACAAGGAAGAACAAGAGACCATGACCTCGTACAAGCTGTTTTTGAGAGTTATAA 118 |||| || |||||||||| |||||| ||||||||||||||| |||||||||||||||||| Sbjct 61 TGGCGGATAAGGAAGAACCAGAGACGATGACCTCGTACAAGTTGTTTTTGAGAGTTATAA 120 Query 119 GCAAGAGAAGAACATGGGCTTGTCTGTTTCTTGTAGTCTACGCGATCCTTTTGTCTTCTT 178 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 121 GCAAGAGAAGAACATGGGCCTGTCTGTTTCTTGTAGTCTACGCGATCCTATTGTCTTCTT 180 Query 179 CATGGAATTCGTTGAATTCGATAGTGAATTGGTACGGAGAGAATCATCAGACATCATCTG 238 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 181 CATGGAATTCGTTGAATTCAATAGTTAATTGGTACGGAGAGAATCATCAGACATCATCTG 240 Query 239 GTTTGCCTGCGATTTACGCGTCGGTGCTTCTTGGTGCGGTGTTCGGAGTTCTGTCTATGG 298 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 241 GTTTGCCTGCGATTTACGCGTCGGTGCTTCTTGGTGCGGTGTTCGGAGTTTTATCTATGG 300 Query 299 CGGCGGCGCTGTTCATAGCTGTTCCGGCGATCGTTGTGATCTGGATATCGGTGGTGGTGA 358 ||||||||||||||||||| || || |||||||| |||||||||||||| |||||||||| Sbjct 301 CGGCGGCGCTGTTCATAGCCGTGCCTGCGATCGTGGTGATCTGGATATCAGTGGTGGTGA 360 Query 359 CGATGGCGTTCGCCGGAAAATCTAGGAAGAGAGTGGTGATTGAAGGAAGGAAAGTGACGA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CGATGGCGTTCGCCGGAAAATCTAGGAAGAGAGTGGTGATTGAAGGAAGGAAAGTGACGA 420 Query 419 AAGAGATTGCTGGTTTTGTGTTTAGGGTTCTTCTTAAAGAAGGAAactttgtggctcttc 478 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAGAGATCGCTGGTTTTGTGTTTAGGGTTCTTCTTAAAGAAGGAAACTTTGTGGCTCTTC 480 Query 479 tttgtgctcttcttgcttactttgtcttctttaactcttactcttcatcttcttgATTCG 538 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 481 TTTGTGCTCTTCTTGCTTACTTCGTCTTCTTTAACTCTTACTCTTCATCTTCTTGATTCG 540 Query 539 ATTTTT-GCAtttttttCATTAACGAAAACATTCACAACTAATATATCGAAA 589 ||||| | ||| || ||||||||||||||||||||| ||| ||||| |||| Sbjct 541 TTTTTTTGAATTCTTGTCATTAACGAAAACATTCACAGCTAGTATATTGAAA 592 > AT4G28340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28330.1); Has 46 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14024534-14025655 REVERSE LENGTH=1122 Length=1122 Score = 791 bits (428), Expect = 0.0 Identities = 527/573 (92%), Gaps = 13/573 (2%) Strand=Plus/Plus Query 19 CCAGACACAGAGTCATAAGATCAGATCTGGTG-T-TCAAATATGGCTGACAAGGAAGAAC 76 ||| ||||||| |||||||| | |||||||| | ||||||||||| || |||||||||| Sbjct 509 CCA-ACACAGAATCATAAGA--AAATCTGGTGTTCTCAAATATGGCGGATAAGGAAGAAC 565 Query 77 AAGAGACCATGACCTCGTACAAGCTGTTTTTGAGAGTTATAAGCAAGAGAAGAACATGGG 136 ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 566 AAGAGACGATGACCTCGTACAAGCTGTTTTTGAGAGTCATAAGCAAGAGGAGAACATGGG 625 Query 137 CT-TGTCTGTTTCTTGTAGTCTACGCGATCCTTTTGTCTTCTTCATGGAATTCGTTGAAT 195 | |||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| Sbjct 626 -TCTGTCTGTTTCTTGTAGTCTACGCGGTCCTTTTGTCTTCTTCAAGAAATTCGTTGAAT 684 Query 196 TCGATAGTGAATTGGTACGGAGAGAATCATCAGACATCATCTGGTTTGCCTGCGATTTAC 255 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 685 TCGATAGTGAATTGGTACGGAGAGAATCATCAGACATCATCTGGTTTGCCTGCTATTTAC 744 Query 256 GCGTCGGTGCTTCTTGGTGCGGTGTTCGGAGTTCTGTCTATGGCGGCGGCGCTGTTCATA 315 |||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 745 GCGTCGGTTCTTCTTGGTGCGGTGTTCGGAGTTCTATCTATGGCGGCAGCTCTGTTCATC 804 Query 316 GCTGTTCCGGCGATCGTTGTGATCTGGATATCGGTGGTGGTGACGATGGCGTTCGCCGGA 375 ||||| || |||||||||||||||||||||||||| |||||||| || |||||| ||| | Sbjct 805 GCTGTGCCAGCGATCGTTGTGATCTGGATATCGGTAGTGGTGACAATAGCGTTCCCCGTA 864 Query 376 AAATCTAGGAAGAGAGTGGTGATTGAAGGAAGGAAAGTGACGAAAGAGATTGCTGGTTTT 435 || || ||||||| ||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 865 AAGTCGAGGAAGAAAGTGGTGATTGAAGGAAGGAAAGTGACGAAAGAAATTGCTGGTTAT 924 Query 436 GTGTTTAGGGTTCTTCTTAAAGAAGGAAactttgtggctcttctttgtgctcttcttgct 495 ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 925 GTGTTTAAGGTTCTTCTTAAAGAAGGAAACTTTGTGGCTCTTCTTTGTGCTGTTATTGCT 984 Query 496 tactttgtcttctttaactctta---ctcttcatcttcttgATTC-GATTTTTGCAtttt 551 ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| Sbjct 985 TACTTTGTCTTCTTTAACTCTTATTACTCTTCATCTTCTTGATTCAG-TTTTTGCATTTT 1043 Query 552 tttCATTAACGAAAACATTCACAACTAATATAT 584 | |||||||||||||||||| ||||||||||| Sbjct 1044 GT-CATTAACGAAAACATTCATAACTAATATAT 1075 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28332058908 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5