BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491940
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28320.1 | Symbols: MAN5, AtMAN5 | Glycosyl hydrolase superf... 2272 0.0
AT2G20680.1 | Symbols: MAN2, AtMAN2 | Glycosyl hydrolase superf... 1027 0.0
> AT4G28320.1 | Symbols: MAN5, AtMAN5 | Glycosyl hydrolase superfamily
protein | chr4:14018183-14020251 REVERSE LENGTH=1685
Length=1685
Score = 2272 bits (1230), Expect = 0.0
Identities = 1409/1493 (94%), Gaps = 22/1493 (1%)
Strand=Plus/Plus
Query 109 TTTTTCTTCTGGGTGGGCACCGACTAAAACAAAAGAACTGTTTCTCCAATTCTGGGTTTG 168
||||||||||||||||||||||||| ||| ||| || || ||||||||||||||||||||
Sbjct 171 TTTTTCTTCTGGGTGGGCACCGACT-AAA-AAAGGAGCTCTTTCTCCAATTCTGGGTTTG 228
Query 169 AAA------T-T-TGTGTGTGTGAAGCA--G--G-A-GA--TAGCAGAAGCATGGTTCCC 212
||| | | ||||||||||||||| | | | || | |||||||||||||||||
Sbjct 229 AAATTTCTGTGTGTGTGTGTGTGAAGCAGTGAAGCAGGAGGTGGCAGAAGCATGGTTCCC 288
Query 213 ACAAGGAACAGGCCAATGCTACGAATTCTAGGGTTTTTTATATGTGCAGCTTTCATCTAT 272
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 289 ACAAGGAACAGGCCAATGCTACGAATTCTAGGTTTTTTTATATGTGCAGCTTTCATCTAT 348
Query 273 TTATCATTTCGGGATTTATGGTTGAATCACAAAGGGAAAGCAAAGTTAGGGTTTGTGAAA 332
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CTATCATTTCGAGATTTGTGGTTGAATCACAAAGGGAAAGCAAAGTTAGGGTTTGTGAAA 408
Query 333 AGGAACGGAACTCAGTTTGTGGTGGATGATAAGCCTCTCTATGTAAATGGTTGGAACTCG 392
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 409 AGGAACGGAACTCAGTTTGTGGTGGATGATAAGCCTCTTTATGTAAATGGGTGGAACTCG 468
Query 393 TATTGGTTCATGGACCATGCGGTTGATGAACATAGCAGAAACCTTGTCGGTGAAATGCTT 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TATTGGTTCATGGACCATGCGGTTGATGAACATAGCAGAAACCTTGTCGGTGAAATGCTT 528
Query 453 GAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACTTGGGCTTTCAATGACGGTGGC 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACTTGGGCTTTCAATGACGGTGGC 588
Query 513 TATAATGCACTTCAGATCTCTCCTGGCCGATTCGATGAGCGAGTCTTTCAGGCTTTGGAT 572
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TACAATGCTCTTCAGATCTCTCCTGGCCGATTCGATGAGCGAGTCTTTCAGGCTTTGGAT 648
Query 573 CATGTAATTGCAGAAGCGAGAAAGCATGATGTTAGATTGCTGCTTAGCTTAGTGAACAAC 632
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 649 CATGTAATTGCAGAAGCGAGAAAGCATGATGTTAGATTGTTGCTTAGCTTAGTGAACAAC 708
Query 633 TTGCAAGCTTATGGAGGGAAGACACAGTATGTGAACTGGGCATGGCAAGAAGGTGTTGGT 692
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 709 TTGCAAGCTTATGGAGGGAAGACTCAGTATGTGAAATGGGCATGGCAAGAAGGTGTTGGT 768
Query 693 GTCAGTTCTTCCAATGATTCCTTCTTCTTTGATCCATCTATCCGCAATTACTTCAAGAAT 752
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CTTAGTTCTTCCAATGATTCCTTCTTCTTTGATCCATCTATCCGCAATTACTTCAAGAAT 828
Query 753 TATCTCAAGGTTCTGCTCACCAGGAAGAACTCGGTAACTGGAATAGAGTACAGAAACGAT 812
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 829 TATCTCAAGGTTCTGCTCACCAGGAAGAACTCTGTAACGGGAATAGAGTACAGAAACGAT 888
Query 813 CCTACGATTTTCGCTTGGGAGTTGATAAACGAGCCTCGATGTACGACTGATGTCTCTGGC 872
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 889 CCTACGATTTTCGCTTGGGAGTTGATAAACGAGCCTCGATGCACGACTGATGTCTCTGGC 948
Query 873 AAAACTCTCCAAGACTGGATAGAAGAAATGACGGGATTCATTAAATCAATCGATGACAAG 932
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 949 AAAACTCTCCAAGATTGGATAGACGAAATGACGGGATTCATTAAGTCAATCGATGACAAG 1008
Query 933 CATCTCCTCACAGTAGGCCTGGAAGGTTTCTATGGTCCTAACAGCCCGAAACGGCTCACA 992
||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 1009 CATCTCCTCACAGTAGGTCTGGAAGGCTTCTATGGTCCTAATAGCCCGAAAGGGCTCACA 1068
Query 993 GTTAATCCAGAACAGTGGGCTTCCGAGCTCGGAACAGACTTTGTTCAAAACTCTAATTCC 1052
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 1069 GTTAATCCAGAACAGTGGGCATCCCAGCTCGGAACAGACTTTGTTCAAAACTCTAACTCC 1128
Query 1053 TCAAACATTGATTTTGCATCCGTTCATATCTACCCCGATCACTGGTTTCATAATCAGACC 1112
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1129 TCAAACATAGATTTTGCATCCGTTCATATCTACCCTGATCACTGGTTTCATAATCAGACA 1188
Query 1113 TTTGAAGAGAAGCTAAAGTTTGTGGTGAAATGGATGCAATCTCACATTGAAGATGGCTTT 1172
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1189 TTTGAAGAGAAGCTAAAGTTTGTGGTGAAATGGATGCAATCTCACATAGAAGATGGATTG 1248
Query 1173 AAAGAACTCAAGAAGCCAGTTCTCTTCACAGAGTTTGGGCTCTCGAACCTGAACAAGGAC 1232
|||||||| ||||||||||||||||||||||||||||| || || |||| ||||||||||
Sbjct 1249 AAAGAACTAAAGAAGCCAGTTCTCTTCACAGAGTTTGGCCTATCAAACCAGAACAAGGAC 1308
Query 1233 TACGAACCATCTCAGCGAGAGAAATTCTACAGAATCATCTTCGATGTGGTTTACAAATCA 1292
||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 1309 TACGAACCATCGCAGCGAGATAAGTTCTACAGAATCATCTTCGACGTGGTTTACAAATCA 1368
Query 1293 GCCAAGCGAAAGAAGTCAGGTGCAGGCACATTGGTGTGGCAACTATTCATGGATGGCATG 1352
||||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 1369 GCCAAAAGAAAGAAGTCAGGTGCAGGCACATTAGTGTGGCAGCTATTCATGGAAGGCATG 1428
Query 1353 GAAACTTTCAGCGATGACTTTGGAATCGTTCCTCATGAACAAGATTCCATTTATAAATTG 1412
||||| |||| |||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct 1429 GAAACATTCAACGATGACTTTGGGATTGTTCCACATGAACAAGATTCCATTTACAAATTG 1488
Query 1413 ATGATAGAACAATCTTGCAGGTTGGGAAAAGTCACAGGACGTCTTAAGGAACAGAACTTG 1472
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 1489 ATGATAGAACAATCTTGCAGATTGGGTAAAGTCACAGGACGTCTTAAGGAACAAAAGTTG 1548
Query 1473 AAAGAACTTTGTTCTCACAAACATTGAGAGAATCACATGTAAACTGTCtttttt-t--AC 1529
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 1549 AAAGAACTTTGTTCTCACAGACATTGAGAGAATCACATGTAAACTGTCTTTTTTCTCTAC 1608
Query 1530 AGTGAAATCTGATTCTCATTTTTGTTGTATACA-GAATTAACTCAGTGAGTAA 1581
||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1609 AGTGAAATCTGATTCTCATTTTTGTTGTATACAAGAATCAACTCAGTGAGTAA 1661
Score = 89.8 bits (48), Expect = 7e-17
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 46 AAATATTTGTTAATTTTCTATAAAGGATTGATTTTTCCGTCTGGGTTTTATAAAAAGTTT 105
|||| |||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 76 AAATCTTTGCTAATTTTCTACAAACGATTGATTTTTCCGTCTGGGTTTTATAAAAGGTTT 135
Query 106 GGATTT 111
|| |||
Sbjct 136 GGGTTT 141
> AT2G20680.1 | Symbols: MAN2, AtMAN2 | Glycosyl hydrolase superfamily
protein | chr2:8920467-8923173 FORWARD LENGTH=1966
Length=1966
Score = 1027 bits (556), Expect = 0.0
Identities = 1019/1243 (82%), Gaps = 30/1243 (2%)
Strand=Plus/Plus
Query 209 TCCCACAAGGAACAGGCCAATGCTACGAATTCTAGGGTTT-TTTATATGTGCAGCTTTCA 267
||| ||| ||||| ||||| || ||| ||||||| ||||| ||| ||||| ||||| |
Sbjct 566 TCCTACAGGGAACGGGCCAGTGATACCAATTCTA-GGTTTCCTTACATGTGTGGCTTTTA 624
Query 268 TCTATTTATCATTTCGG-GATTTATGGTT--GAATCACAAAGGGAAAGCAAAGTTAGGGT 324
||||| | || ||| || ||||| ||||| | ||| ||| ||| || |||||| |
Sbjct 625 TCTATCTCTCCTTT-GGAGATTTGTGGTTCGGTCTCA-AAACGGAGGGC-GAGTTAGCAT 681
Query 325 TTGTGAAAAGGAACGGAACTCAGTTTGTGGTGGATGATAAGCCTCTCTATGTAAATGGTT 384
| |||||| |||| || || ||||||||||| |||| |||| |||| ||||| |||||||
Sbjct 682 TCGTGAAACGGAATGGGACACAGTTTGTGGTCGATGGTAAGGCTCTGTATGTGAATGGTT 741
Query 385 GGAACTCGTATTGGTTCATGGACCATGCGGTTG-ATGAACATAGCAGAAACCTTGTCGGT 443
||||||| |||||||||||||||||||| | || |||| ||||| ||| | | || ||
Sbjct 742 GGAACTCTTATTGGTTCATGGACCATGCTG-TGAATGATCATAGTAGACATCGCGTTAGT 800
Query 444 GAAATGCTTGAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACTTGGGCTTTCAAT 503
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 801 GCTATGCTTGAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACATGGGCTTTTAAT 860
Query 504 GACGGTGGCTATAATGCACTTCAGATCTCTCCTGGCCGATTCGATGAGCGAGTCTTTCA- 562
|| || ||||| ||||| ||||||||||||||||| |||||||||| ||||| |||||
Sbjct 861 GATGGAGGCTACAATGCTCTTCAGATCTCTCCTGGTAGATTCGATGAACGAGT-TTTCAA 919
Query 563 GGCTTTGGATCATGTAATTGCAGAAGCGAGAA-AGCATGATGTTAGATTGCTGCTTAGCT 621
||| || ||||||||||| ||||| || | || | |||| |||||| ||||| || ||||
Sbjct 920 GGCCTTAGATCATGTAATCGCAGAGGCCAAAACA-CATGGTGTTAGGTTGCTTCTGAGCT 978
Query 622 TAGTGAACAACTTGCAAGCTTATGGAGGGAAGACACAGTATGTGAACTGGGCATGGCAAG 681
||||||| ||||| ||||||||||||||||| || ||||| || || ||||||||||| |
Sbjct 979 TAGTGAATAACTTACAAGCTTATGGAGGGAAAACTCAGTACGTCAATTGGGCATGGCAGG 1038
Query 682 AAGGTGTTGGTGTCAGTTCTTCCAATGATTCCTTCTTCTTTGATCCATCTATCCGCA-AT 740
||||||| || |||| || ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1039 AAGGTGTAGGCCTCAGCTCATCCAATGATTCCTTCTTCTTTGACCCATCTATCCGCAGAT 1098
Query 741 TACTTCAAGAATTATCTCAAGGTTCTGCTCACCAGGAAGAACTCGGTAACTGGAATAGAG 800
|||||||||||||||||| ||| ||||| ||| | || ||||| |||| || || |||
Sbjct 1099 -ACTTCAAGAATTATCTCACGGTGCTGCTGACCCGTAAAAACTCTTTAACCGGGATTGAG 1157
Query 801 TACAGAAACGATCCTACGATTTTCGCTTGGGAGTTGATAAACGAGCCTCGATGTACGACT 860
||||||||||| || || ||||| || ||||||||||||||||||||||| || | | ||
Sbjct 1158 TACAGAAACGACCCAACAATTTTTGCATGGGAGTTGATAAACGAGCCTCGCTGCATGTCT 1217
Query 861 GATGTCTCTGGCAAAACTCTCCAAGACTGGATAGAA-GAAATGACGGGATTCATTAAATC 919
||||||||||| | ||||| ||||||||||| || |||||||| | ||||||||||||
Sbjct 1218 GATGTCTCTGGGGATACTCTACAAGACTGGATT-AACGAAATGACAGCATTCATTAAATC 1276
Query 920 AATCGATGACAAGCATCTCCTCACAGTAGGCCTGGAAGGTTTCTATGGTCCTAACAGCCC 979
||| || |||||||||| || || || ||| ||||||| ||||| ||||| | |||||
Sbjct 1277 AATTGACAACAAGCATCTTCTAACTGTTGGCTTGGAAGGGTTCTACGGTCCCAGTAGCCC 1336
Query 980 GAAACGGCTCACAGTTAATCCAGAACAGTGGGCTTCCGAGCTCGGAACAGACTTTGTTCA 1039
||| ||| |||||||| || |||| |||||| || ||||| || |||| |||||||
Sbjct 1337 AAAAAAGCTGACAGTTAACCCCGAACGGTGGGCCTCTGAGCTTGGGTCAGATTTTGTTCG 1396
Query 1040 AAACTCTAATTC-CTCAAACATTGATTTTGCATCCGTTCATATCTACCCCGATCACTGGT 1098
||||||| |||| | ||||||| |||||||| || |||||||||||||| ||||||||||
Sbjct 1397 AAACTCTGATTCGC-CAAACATCGATTTTGCCTCGGTTCATATCTACCCTGATCACTGGT 1455
Query 1099 TTCATAATCA-GACCTTTGAAGAGAAGCTAAAGTTTGTGGTGAAATGGATGCAATCTCAC 1157
|||| |||| | |||||||| || || ||||| || || |||||||||| |||||||
Sbjct 1456 TTCACGATCAAGGG-TTTGAAGAAAAACTCAAGTTCGTTGTAAAATGGATGCTATCTCAC 1514
Query 1158 ATTGAAGATGGCTTTAAAGAACTCAAGAAGCCAGTTCTCTTCACAGAGTTTGGGCTCTCG 1217
||||||||||| || ||||| |||||||| ||||| ||||| |||||||| ||||||
Sbjct 1515 ATTGAAGATGGGGACAAGGAACTGAAGAAGCCTGTTCTGTTCACCGAGTTTGGACTCTCG 1574
Query 1218 AACCTGAACAAGGACTACGAACCATCTCAGCGAGAGAAATTCTACAGAATCATCTTCGAT 1277
|| ||||||||||||||||| ||||| ||||| || |||||||||| |||||| |||
Sbjct 1575 AATCTGAACAAGGACTACGATCCATCGCAGCGGGATCGGTTCTACAGAACCATCTTTGAT 1634
Query 1278 GTGGTTTACAAATCAGCCAAGCGAAAGAAGTCAGGTGCAGGCACATTGGTGTGGCAACTA 1337
|| ||||||||||||||||| | ||| ||| |||||||| ||| | |||||||| |
Sbjct 1635 GTTATTTACAAATCAGCCAAGAGGAAGCGGTCTGGTGCAGGAACACTAGTGTGGCAG-T- 1692
Query 1338 TTC--ATGGATGGCATGGAAACTTTCAGCGATGACTTTGGAATCGTTCCTCATGA-A-CA 1393
||| || || ||||||||| ||||| ||||||||||||||| || || |||| | ||
Sbjct 1693 TTCTGATAGAAGGCATGGAAGGTTTCAACGATGACTTTGGAATAGT-CC-CATGGGAGCA 1750
Query 1394 AGATTCCATTTATAAATTGATGATAGAACAATCTTGCAGGTTG 1436
||| |||||| | | ||| ||||| ||||| |||||||| |||
Sbjct 1751 AGACTCCATTCAGAGATTAATGATTGAACAGTCTTGCAGATTG 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78061847475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5