BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491941 Length=681 Score E Sequences producing significant alignments: (Bits) Value AT4G28310.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 876 0.0 AT1G52270.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 159 2e-38 > AT4G28310.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14017408-14018208 FORWARD LENGTH=801 Length=801 Score = 876 bits (474), Expect = 0.0 Identities = 617/685 (90%), Gaps = 14/685 (2%) Strand=Plus/Plus Query 1 ATCTCTCATTCATCATCATCTTTCTGAAAT-TAACTCAATAGTAAACACAATGATGACGC 59 ||||||||||||||||| ||||| | ||| | | || | | |||| ||||||||||| Sbjct 2 ATCTCTCATTCATCATCCTCTTTTTTCAATCTCGTTTAA-AATTAACATAATGATGACGC 60 Query 60 CGGTGAAGAAAAATGTCTCCATTAGACCGGT-TACTTTCTATGGAAACGGGCTTCCCCGA 118 | |||||||||| | || ||||||||||||| | | ||||| |||||||||||||| || Sbjct 61 CAGTGAAGAAAAGTATCGCCATTAGACCGGTGT-CGTTCTACGGAAACGGGCTTCCTCGT 119 Query 119 CCTCGTTTCTTTGATAATCCTAAGTTCAACGCTTACCGTGTTGATCCTCCAGTTTCTGTG 178 ||||||||||| ||||||||||||||||| | |||||||||||||||||| | |||||| Sbjct 120 CCTCGTTTCTTCGATAATCCTAAGTTCAATGATTACCGTGTTGATCCTCCCCTCTCTGTG 179 Query 179 CTTGATCCGCTTCTCTCATGGGCTAGAGACGCTCACTGGTCCATGGGTGGTCTCAACTTC 238 || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 180 CTAGATCCTCTTCTCTCATGGGCGAGAGACGCTCACTGGTCAATGGGTGGTCTCAACTTC 239 Query 239 ACGCGTCTCCGTCTCCAAGGCCGAATCGAAGGAAACGTCAACAAGCTCCGTGCACAGCTT 298 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 240 ACGCGTCTCCGTCTCCAAGGCCGGATCGAAGGAAACGTCAACAAGCTCCGTGCACAGCTT 299 Query 299 GAGAAATCTAGCCCTGTGAAACTCGAATCTGGAATGAAGAAGAAGAGATCTGGTTCTGAG 358 |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 300 GAGAAATCCACCCCTGTGAAACTCGAATCTGGAAGGAAGAAGAAGAGATCTGGTTCTGAG 359 Query 359 TCTCCTCCTGCTGCTCCCATTGTGCTGAAACGAAGGAGGTACTTAGATCTCAACGATTCT 418 ||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||| Sbjct 360 TCTCCTCCTTCTGCTCCGATTGTGGTGAAACGAAGGAGGTACTTAGATCTGAACGATTCT 419 Query 419 GATGATGATGAGGAAGTCGGATCTGAAGATGAAGGTGTTGTGAGAATCAAGAGAAAACTC 478 |||||||| | | ||||||||||||||||||||||||| || ||||||| |||||||||| Sbjct 420 GATGATGA-G-G-AAGTCGGATCTGAAGATGAAGGTGTGGTTAGAATCAGGAGAAAACTC 476 Query 479 TCTGATGATTTTGATAGAGTTGCTGGAGAGAGCAAGACCAAACTTGTTGAAGCCAACAAG 538 |||||||||||||||||||| |||| ||| |||||||| |||||||||||||| |||||| Sbjct 477 TCTGATGATTTTGATAGAGTCGCTGAAGAAAGCAAGACTAAACTTGTTGAAGCTAACAAG 536 Query 539 AAATCGATTAAATCTGAGTTAGTGGAGAAGACGAGATTGAAGGAGAAGAAGAAGAAGATC 598 |||||||||||||||||||| |||||||||| |||||||| ||||||||||||| || Sbjct 537 AAATCGATTAAATCTGAGTTTGTGGAGAAGAAGAGATTGATTGAGAAGAAGAAGA---TC 593 Query 599 G-ACAAACTGAACAAGACAAGTTCAACGAGGTCATCTCCAAGATTGGCGAAGCGTAGCTC 657 | | ||| | ||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 594 GTA-AAAGTTAACAAGACAAGTTCAACGAGGTCATCTCCAAGACTGGCTAAGCGTAGCTC 652 Query 658 TAGTTAGTTTTCAGT-TTTAGTCTC 681 || |||||||||| | ||||||||| Sbjct 653 TAATTAGTTTTCA-TATTTAGTCTC 676 > AT1G52270.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28310.1); Has 29 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19463678-19464355 REVERSE LENGTH=678 Length=678 Score = 159 bits (86), Expect = 2e-38 Identities = 109/120 (91%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 422 GATGATGAGGAAGTCGGATCTGAAGATGAAGGTGTTGTGAGAATCAAGAGAAAACTCTCT 481 |||||||||||| ||||||||||||||| |||||| || ||||||| ||||||||||||| Sbjct 267 GATGATGAGGAAATCGGATCTGAAGATGTAGGTGTGGTTAGAATCAGGAGAAAACTCTCT 326 Query 482 GATGATTTTGATAGAGTTGCTGGA-GAGAGCAAGACCAAACTTGTTGAAGCCAACAAGAA 540 ||||||||||||||||| || ||| |||||||||||| ||||||||||||| ||| |||| Sbjct 327 GATGATTTTGATAGAGTCGC-GGAAGAGAGCAAGACCGAACTTGTTGAAGCTAACGAGAA 385 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32953600432 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5