BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491941
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28310.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 876 0.0
AT1G52270.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 159 2e-38
> AT4G28310.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G52270.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:14017408-14018208 FORWARD LENGTH=801
Length=801
Score = 876 bits (474), Expect = 0.0
Identities = 617/685 (90%), Gaps = 14/685 (2%)
Strand=Plus/Plus
Query 1 ATCTCTCATTCATCATCATCTTTCTGAAAT-TAACTCAATAGTAAACACAATGATGACGC 59
||||||||||||||||| ||||| | ||| | | || | | |||| |||||||||||
Sbjct 2 ATCTCTCATTCATCATCCTCTTTTTTCAATCTCGTTTAA-AATTAACATAATGATGACGC 60
Query 60 CGGTGAAGAAAAATGTCTCCATTAGACCGGT-TACTTTCTATGGAAACGGGCTTCCCCGA 118
| |||||||||| | || ||||||||||||| | | ||||| |||||||||||||| ||
Sbjct 61 CAGTGAAGAAAAGTATCGCCATTAGACCGGTGT-CGTTCTACGGAAACGGGCTTCCTCGT 119
Query 119 CCTCGTTTCTTTGATAATCCTAAGTTCAACGCTTACCGTGTTGATCCTCCAGTTTCTGTG 178
||||||||||| ||||||||||||||||| | |||||||||||||||||| | ||||||
Sbjct 120 CCTCGTTTCTTCGATAATCCTAAGTTCAATGATTACCGTGTTGATCCTCCCCTCTCTGTG 179
Query 179 CTTGATCCGCTTCTCTCATGGGCTAGAGACGCTCACTGGTCCATGGGTGGTCTCAACTTC 238
|| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 180 CTAGATCCTCTTCTCTCATGGGCGAGAGACGCTCACTGGTCAATGGGTGGTCTCAACTTC 239
Query 239 ACGCGTCTCCGTCTCCAAGGCCGAATCGAAGGAAACGTCAACAAGCTCCGTGCACAGCTT 298
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 ACGCGTCTCCGTCTCCAAGGCCGGATCGAAGGAAACGTCAACAAGCTCCGTGCACAGCTT 299
Query 299 GAGAAATCTAGCCCTGTGAAACTCGAATCTGGAATGAAGAAGAAGAGATCTGGTTCTGAG 358
|||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 GAGAAATCCACCCCTGTGAAACTCGAATCTGGAAGGAAGAAGAAGAGATCTGGTTCTGAG 359
Query 359 TCTCCTCCTGCTGCTCCCATTGTGCTGAAACGAAGGAGGTACTTAGATCTCAACGATTCT 418
||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 360 TCTCCTCCTTCTGCTCCGATTGTGGTGAAACGAAGGAGGTACTTAGATCTGAACGATTCT 419
Query 419 GATGATGATGAGGAAGTCGGATCTGAAGATGAAGGTGTTGTGAGAATCAAGAGAAAACTC 478
|||||||| | | ||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 420 GATGATGA-G-G-AAGTCGGATCTGAAGATGAAGGTGTGGTTAGAATCAGGAGAAAACTC 476
Query 479 TCTGATGATTTTGATAGAGTTGCTGGAGAGAGCAAGACCAAACTTGTTGAAGCCAACAAG 538
|||||||||||||||||||| |||| ||| |||||||| |||||||||||||| ||||||
Sbjct 477 TCTGATGATTTTGATAGAGTCGCTGAAGAAAGCAAGACTAAACTTGTTGAAGCTAACAAG 536
Query 539 AAATCGATTAAATCTGAGTTAGTGGAGAAGACGAGATTGAAGGAGAAGAAGAAGAAGATC 598
|||||||||||||||||||| |||||||||| |||||||| ||||||||||||| ||
Sbjct 537 AAATCGATTAAATCTGAGTTTGTGGAGAAGAAGAGATTGATTGAGAAGAAGAAGA---TC 593
Query 599 G-ACAAACTGAACAAGACAAGTTCAACGAGGTCATCTCCAAGATTGGCGAAGCGTAGCTC 657
| | ||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 594 GTA-AAAGTTAACAAGACAAGTTCAACGAGGTCATCTCCAAGACTGGCTAAGCGTAGCTC 652
Query 658 TAGTTAGTTTTCAGT-TTTAGTCTC 681
|| |||||||||| | |||||||||
Sbjct 653 TAATTAGTTTTCA-TATTTAGTCTC 676
> AT1G52270.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G28310.1);
Has 29 Blast hits to 28 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19463678-19464355
REVERSE LENGTH=678
Length=678
Score = 159 bits (86), Expect = 2e-38
Identities = 109/120 (91%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 422 GATGATGAGGAAGTCGGATCTGAAGATGAAGGTGTTGTGAGAATCAAGAGAAAACTCTCT 481
|||||||||||| ||||||||||||||| |||||| || ||||||| |||||||||||||
Sbjct 267 GATGATGAGGAAATCGGATCTGAAGATGTAGGTGTGGTTAGAATCAGGAGAAAACTCTCT 326
Query 482 GATGATTTTGATAGAGTTGCTGGA-GAGAGCAAGACCAAACTTGTTGAAGCCAACAAGAA 540
||||||||||||||||| || ||| |||||||||||| ||||||||||||| ||| ||||
Sbjct 327 GATGATTTTGATAGAGTCGC-GGAAGAGAGCAAGACCGAACTTGTTGAAGCTAACGAGAA 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5