BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491945
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28280.2 | Symbols: LLG3 | LORELEI-LIKE-GPI ANCHORED PROTEIN... 634 0.0
AT2G20700.1 | Symbols: LLG2 | LORELEI-LIKE-GPI ANCHORED PROTEIN... 311 8e-84
> AT4G28280.2 | Symbols: LLG3 | LORELEI-LIKE-GPI ANCHORED PROTEIN
3 | chr4:14010685-14011558 FORWARD LENGTH=654
Length=654
Score = 634 bits (343), Expect = 0.0
Identities = 389/412 (94%), Gaps = 0/412 (0%)
Strand=Plus/Plus
Query 412 CATGCAAAGAAGATTTTGCGGCCAAGAATTACACAATCATAACAAGTAAATGCAAAGGAC 471
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 240 CATGCAAAGAAGATTTTGCGGCAAAGAATTACACAATCATAACGAGTAAATGCAAAGGAC 299
Query 472 CAAATTATCCGGCCAAGGTATGTTGCTCGGCCTTCAAGGACTTTGCTTGCCCATTCGCGG 531
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 CAAATTACCCGGCCAAAGTATGTTGTTCGGCCTTCAAGGACTTTGCTTGCCCATTCGCGG 359
Query 532 AAGTTCTTAACGACGAAAAGACAGATTGTGCCTCCACAATGTTCAGCTACATCAATCTCT 591
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 AAGTTCTTAACGATGAAAAGACAGATTGTGCCTCCACAATGTTTAGCTACATCAATCTCT 419
Query 592 ATGGTCGTTATCCTCCTGGAATATTCGCTAACATGTGCAAAGAAGGCAAAGAAGGCCTCG 651
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 ACGGTCGTTATCCTCCTGGAATATTCGCTAACATGTGCAAAGAAGGCAAAGAAGGTCTCG 479
Query 652 ATTGCACCAACGTCACCGCTACCTCTTCGTCCCATGTATCGATCCCTTTTGTTTCTACAC 711
|||||||| |||||||| |||| || || ||||||| |||||||||| ||||||| ||||
Sbjct 480 ATTGCACCGACGTCACCCCTACATCATCTTCCCATGCATCGATCCCTCTTGTTTCCACAC 539
Query 712 ACGCTTTGCTAATCACCGTTTTCATCTTGTTTCGCCTCTTCTAAAGACTTGTAAATGTTA 771
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 540 ACGTTTTGCTAATCACCGTTTCCATCTTGTTTCACCTCTTCTAAAGACTTGTAAATGTTA 599
Query 772 CAATATGAGTTATATATTACATTCCATTGTTAGTTGTTTTGTGATCATAGAT 823
|||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 600 CAATATGAGTTATATATTGCATTCCATTGTTAGTTGCTTTGTGAGCATAGAT 651
Score = 220 bits (119), Expect = 1e-56
Identities = 169/191 (88%), Gaps = 11/191 (6%)
Strand=Plus/Plus
Query 1 CCTCCTATAATTCTAATGgaaacaagaaaaaag-aaaaacaagaaacg-ttagaatttca 58
|||||||||| |||||||||||| || |||||| |||||||||||||| |||||| |||
Sbjct 1 CCTCCTATAACTCTAATGGAAAC-AGGAAAAAGAAAAAACAAGAAACGATTAGAAACTCA 59
Query 59 aatgtgacaaaacgtcaaaaataaaaataaaGGAGGAGGAAACAGAAACATGAAGATTAC 118
|||||||||||| ||| | |||||| | |||||||||||| |||||||||||||||
Sbjct 60 AATGTGACAAAAAGTC----A-AAAAAT--A-GAGGAGGAAACAAAAACATGAAGATTAC 111
Query 119 TCATCATTGTTTGGTTTCTCTTTTCTCAATCCTCCTTTTGTCTGGATTCGCCTTGTCTCT 178
|||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||||
Sbjct 112 TCATCATTGTTTGGTTTCTCTTCTCTCTATCCTCCTTTTGTCTGGATTCGCTTTCTCTCA 171
Query 179 TCACATCTCTC 189
|||||||||||
Sbjct 172 TCACATCTCTC 182
> AT2G20700.1 | Symbols: LLG2 | LORELEI-LIKE-GPI ANCHORED PROTEIN
2 | chr2:8924894-8925804 REVERSE LENGTH=691
Length=691
Score = 311 bits (168), Expect = 8e-84
Identities = 227/256 (89%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 414 TGCAAAGAAGATTTTGCGGCCAAGAATTACACAATCATAACAAGTAAATGCAAAGGACCA 473
||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||
Sbjct 220 TGCAAAGAAGATTTTGCTAACAAGAACTACACAATCATAACAAGCAGATGCAAAGGACCA 279
Query 474 AATTATCCGGCCAAGGTATGTTGCTCGGCCTTCAAGGACTTTGCTTGCCCATTCGCGGAA 533
||||||||||| || || |||||||| ||||||||||||||||||||||| || || |||
Sbjct 280 AATTATCCGGCAAATGTGTGTTGCTCCGCCTTCAAGGACTTTGCTTGCCCTTTTGCAGAA 339
Query 534 GTTCTTAACGACGAAAAG-ACAGATTGTGCCTCCACAATGTTCAGCTACATCAATCTCTA 592
|||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||
Sbjct 340 GTTCTTAACGACGAAAAGAAC-GATTGTGCCTCCACAATGTTCAGCTACATCAACCTTTA 398
Query 593 TGGTCGTTATCCTCCTGGAATATTCGCTAACATGTGCAAAGAAGGCAAAGAAGGCCTCGA 652
|||||||||||||||||||| || || |||||||| ||||| ||||||||||| || ||
Sbjct 399 CGGTCGTTATCCTCCTGGAATCTTTGCCAACATGTGTAAAGAGGGCAAAGAAGGTCTTGA 458
Query 653 TTGCACCAACGTCACC 668
||||| | ||||||
Sbjct 459 CTGCACTGATGTCACC 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5