BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491946
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 | ... 1277 0.0
> AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2
| chr4:14007539-14009019 REVERSE LENGTH=880
Length=880
Score = 1277 bits (691), Expect = 0.0
Identities = 789/837 (94%), Gaps = 4/837 (0%)
Strand=Plus/Plus
Query 1 TGTGTATAATAAGGTTTCATGCTTCTGCACCACCCTCGATCTATATATTCTTACCCCATT 60
||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||
Sbjct 32 TGTGTATAATAAGGTCTCCTGCTTCTGCACCACCCTCGATCTAAACATTCTTACCCCATT 91
Query 61 CTCTAAACACAAATAAATCTTTTTCTCTGTTCTT-TGACCATTGTCGCATGAACCAATAC 119
|||| ||| |||||||||| |||||||||||||| || ||||||||||||||||| |||
Sbjct 92 CTCTTAACCCAAATAAATCATTTTCTCTGTTCTTCTG-CCATTGTCGCATGAACCTGTAC 150
Query 120 AAGCTCTCTGAAGTTTCCAAAGGCTCAAAGACAGAAGAGATCTATCGGTACTTGCAATCT 179
||||||||| ||||||||||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 151 AAGCTCTCTCAAGTTTCCAAAGGCTTAAAGACAGAAGAGATCCATCGGTACTTACAATCT 210
Query 180 TTCCAAAGATAAAATGGAGATAGAGAATGATGAGAACGACACAACATTGGTTGATTCTGG 239
||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 211 TTCCAAAGATAAAATGGAGATTGAGAAGGATGAGGACGACACAACATTGGTTGATTCTGG 270
Query 240 AGGAGACTTCGACTGCAACATATGCTTGGATCAGGTTCGAGACCCGGTCGTGACTTTATG 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 271 AGGAGACTTCGACTGCAACATATGTTTGGATCAGGTTCGAGACCCGGTCGTGACTTTATG 330
Query 300 TGGCCACTTGTTTTGTTGGCCCTGCATTCACAAGTGGACTTATGCCTCCAACAATTCAAG 359
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 331 TGGCCACCTGTTTTGTTGGCCCTGCATTCACAAGTGGACTTATGCGTCCAACAATTCAAG 390
Query 360 ACAACGCGTCGATCAATACGAT-AGTAAGAGGGAACCACCAAAATGTCCGGTATGCAAAT 418
|||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 391 ACAACGAGTCGATCAATACGATCA-TAAGAGGGAACCACCAAAATGTCCGGTATGCAAAT 449
Query 419 CCGATGTCTCCGAGGCTACGCTTGTTCCGATCTACGGCCGAGGACAGAAAACTCCCCAGT 478
| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 450 CTGATGTCTCCGAGGCTACGCTTGTCCCGATCTACGGACGAGGACAGAAAGCTCCCCAGT 509
Query 479 CCGGTTCAACCGTACCGAGTAGACCATCCGGTCCGGTTTATGACTTAAGAGGAGTTGGTC 538
||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 510 CCGGTTCAAATGTACCGAGCAGACCAACTGGTCCGGTTTATGACTTAAGAGGAGTTGGTC 569
Query 539 AACGTTTGGGAGAAGGGGAGAGTCAACGGTACATGTATAGAATGCCTGATCCGGTGATGG 598
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 570 AACGTTTAGGAGAAGGGGAGAGTCAACGTTACATGTATAGAATGCCTGATCCGGTGATGG 629
Query 599 GTGTGGTATGCGAAATGGTATACCGGAGACTATTTGGAGAGTCTTCGAGCAACATGGTAC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 630 GTGTGGTATGCGAAATGGTATACCGGAGACTATTTGGAGAGTCTTCGAGCAACATGGCAC 689
Query 659 CTTACCGTGACACAAATGTCCGGTCGAGGCGACGGGCAATGCAAGCTGAGGAGTCACTAA 718
||||||| || | ||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 690 CTTACCGCGATATGAATGTCCGGTCTAGGCGACGGGCAATGCAGGCTGAGGAGTCATTAA 749
Query 719 GCAGAGTCTACTTGTTCCTACTTTGCTTCATGTTTATGTGTCTGCTTCTCTTCTAATTAT 778
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 750 GCAGAGTCTACTTGTTTCTACTTTGCTTCATGTTTATGTGTCTATTTCTCTTCTAATTAT 809
Query 779 GatatatatatgtatataatataCCAATTGGAATGAGTATGCATATATGTAATAACA 835
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 AATATATATGTGTATATAATATACCAATTGGAATGAGTATGCATATATGTAATAACA 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40689659070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5