BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491946 Length=835 Score E Sequences producing significant alignments: (Bits) Value AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 | ... 1277 0.0 > AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 | chr4:14007539-14009019 REVERSE LENGTH=880 Length=880 Score = 1277 bits (691), Expect = 0.0 Identities = 789/837 (94%), Gaps = 4/837 (0%) Strand=Plus/Plus Query 1 TGTGTATAATAAGGTTTCATGCTTCTGCACCACCCTCGATCTATATATTCTTACCCCATT 60 ||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||| Sbjct 32 TGTGTATAATAAGGTCTCCTGCTTCTGCACCACCCTCGATCTAAACATTCTTACCCCATT 91 Query 61 CTCTAAACACAAATAAATCTTTTTCTCTGTTCTT-TGACCATTGTCGCATGAACCAATAC 119 |||| ||| |||||||||| |||||||||||||| || ||||||||||||||||| ||| Sbjct 92 CTCTTAACCCAAATAAATCATTTTCTCTGTTCTTCTG-CCATTGTCGCATGAACCTGTAC 150 Query 120 AAGCTCTCTGAAGTTTCCAAAGGCTCAAAGACAGAAGAGATCTATCGGTACTTGCAATCT 179 ||||||||| ||||||||||||||| |||||||||||||||| |||||||||| |||||| Sbjct 151 AAGCTCTCTCAAGTTTCCAAAGGCTTAAAGACAGAAGAGATCCATCGGTACTTACAATCT 210 Query 180 TTCCAAAGATAAAATGGAGATAGAGAATGATGAGAACGACACAACATTGGTTGATTCTGG 239 ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| Sbjct 211 TTCCAAAGATAAAATGGAGATTGAGAAGGATGAGGACGACACAACATTGGTTGATTCTGG 270 Query 240 AGGAGACTTCGACTGCAACATATGCTTGGATCAGGTTCGAGACCCGGTCGTGACTTTATG 299 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 271 AGGAGACTTCGACTGCAACATATGTTTGGATCAGGTTCGAGACCCGGTCGTGACTTTATG 330 Query 300 TGGCCACTTGTTTTGTTGGCCCTGCATTCACAAGTGGACTTATGCCTCCAACAATTCAAG 359 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 331 TGGCCACCTGTTTTGTTGGCCCTGCATTCACAAGTGGACTTATGCGTCCAACAATTCAAG 390 Query 360 ACAACGCGTCGATCAATACGAT-AGTAAGAGGGAACCACCAAAATGTCCGGTATGCAAAT 418 |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 391 ACAACGAGTCGATCAATACGATCA-TAAGAGGGAACCACCAAAATGTCCGGTATGCAAAT 449 Query 419 CCGATGTCTCCGAGGCTACGCTTGTTCCGATCTACGGCCGAGGACAGAAAACTCCCCAGT 478 | ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| Sbjct 450 CTGATGTCTCCGAGGCTACGCTTGTCCCGATCTACGGACGAGGACAGAAAGCTCCCCAGT 509 Query 479 CCGGTTCAACCGTACCGAGTAGACCATCCGGTCCGGTTTATGACTTAAGAGGAGTTGGTC 538 ||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 510 CCGGTTCAAATGTACCGAGCAGACCAACTGGTCCGGTTTATGACTTAAGAGGAGTTGGTC 569 Query 539 AACGTTTGGGAGAAGGGGAGAGTCAACGGTACATGTATAGAATGCCTGATCCGGTGATGG 598 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 570 AACGTTTAGGAGAAGGGGAGAGTCAACGTTACATGTATAGAATGCCTGATCCGGTGATGG 629 Query 599 GTGTGGTATGCGAAATGGTATACCGGAGACTATTTGGAGAGTCTTCGAGCAACATGGTAC 658 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 630 GTGTGGTATGCGAAATGGTATACCGGAGACTATTTGGAGAGTCTTCGAGCAACATGGCAC 689 Query 659 CTTACCGTGACACAAATGTCCGGTCGAGGCGACGGGCAATGCAAGCTGAGGAGTCACTAA 718 ||||||| || | ||||||||||| ||||||||||||||||| |||||||||||| ||| Sbjct 690 CTTACCGCGATATGAATGTCCGGTCTAGGCGACGGGCAATGCAGGCTGAGGAGTCATTAA 749 Query 719 GCAGAGTCTACTTGTTCCTACTTTGCTTCATGTTTATGTGTCTGCTTCTCTTCTAATTAT 778 |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 750 GCAGAGTCTACTTGTTTCTACTTTGCTTCATGTTTATGTGTCTATTTCTCTTCTAATTAT 809 Query 779 GatatatatatgtatataatataCCAATTGGAATGAGTATGCATATATGTAATAACA 835 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810 AATATATATGTGTATATAATATACCAATTGGAATGAGTATGCATATATGTAATAACA 866 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40689659070 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5