BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491947
Length=2111
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28260.1 | Symbols: | unknown protein; Has 50 Blast hits to... 2726 0.0
> AT4G28260.1 | Symbols: | unknown protein; Has 50 Blast hits
to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 1; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:14004485-14006970 FORWARD
LENGTH=2322
Length=2322
Score = 2726 bits (1476), Expect = 0.0
Identities = 1598/1657 (96%), Gaps = 7/1657 (0%)
Strand=Plus/Plus
Query 456 TGAATGGCTGAGAAGAAAGAATTAGGGTTACCAAAGCCTAGTATTAATTTGAAAGAGCAG 515
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 TGAATGGCTGAGAAGAAAGAATTAGGGTTACCAAAGCCTAGTATTAATTTGAAAGAGCAA 620
Query 516 TTAGCTAGAACTACTCTGAAGAATTTGAGGTTACAAGGGCATACTTACATTGAGCTACGT 575
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 621 TTAGCAAGAACTACTCTGAAGAATCTGAGGTTACAAGGGCATACTTACATTGAGCTACGT 680
Query 576 GAGGATGGGAAACGTTTTGTATTCTTCTGCACTTTGTGTCTTGCTCCTTGCTACAGCGAC 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GAGGATGGGAAACGTTTTGTATTCTTCTGCACTTTGTGTCTTGCTCCTTGCTACAGCGAC 740
Query 636 ACAATCTTGCTTGGACACTTGAATGGAAACCTTCACAAGGAGAGATTGGCATGTGCTAGG 695
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACAATCTTGCTTGGGCACTTGAATGGAAACCTTCACAAGGAGAGATTGGCATGTGCTAGG 800
Query 696 ATTACACTTCTTGGAACGAATCCTTGGCCTTTCAGTGATGGTGTCCTTTTCTTTGATAGT 755
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 801 ATCACACTTCTTGGAACGAATCCTTGGCCTTTCAGTGATGGTGTACTTTTCTTTGATAGT 860
Query 756 TCAACTGGAGAAGAAGAAGAGAAAACTCCAGTTTCTGGTGGTGCAA-GTGTTCCCGGTAC 814
|||||||||||||||||||||||| |||||||||||||||||| || | ||||| | |||
Sbjct 861 TCAACTGGAGAAGAAGAAGAGAAATCTCCAGTTTCTGGTGGTG-AAGGGGTTCCTGATAC 919
Query 815 GTTGGAGCATTGTAGTGATGATGAAAGATTTGCTATTGTCAAGTATGATAACAACAAAGC 874
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 920 GTTGGAGCATTGTAGTGATGATGAAAGATTTGCTATTGTCAAGTATGATAACAACAAAAC 979
Query 875 AAATGGAGATAACCAGCCTGCTGCAGTTACTGATGATGAACCTAGTCACTCTACAGATGA 934
|||||||||||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 980 AAATGGAGATAATGTGCCTGCTGCAGTTACTGATGATGAACCTAGTCACGCTGCAGATGA 1039
Query 935 TCTGCTAATTTCTGGTGTGCTGATCAAGGAGAGAACTCTTGATGTTGAAGCAAAGTTCAT 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TCTGCTAATTTCTGGTGTGCTGATCAAGGAGAGAACTCTTGATGTTGAAGCAAAGTTCAT 1099
Query 995 TGGTTTTGGCCGAATAGCTGCCAGGTTGTTTGAAACGAAAGGACGCACTACTTGGATTGA 1054
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1100 TGGTTTTGGCCGAATAGCTGCCAGGTTGTTTGAAACGAAAGGACGCACAACTTGGATTGA 1159
Query 1055 TAAACTCTGGTGCGAGTGGTTAGGAGACGAGGGTCCTTCAGATGAGGAGAAGGCTACTAT 1114
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1160 TAAACTATGGTGCGAGTGGTTAGGAGACGAGGGTCCTTCAGATGAGGAGAAGGCTACGAT 1219
Query 1115 CCCAGAGCATGACTTTGCCATTGTCACATTCTCCTACTTCTACAATTTGGGTAGGCTGGG 1174
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 CCCGGAGCATGACTTTGCCATTGTCACATTCTCCTACTTCTACAATTTGGGTAGGCTGGG 1279
Query 1175 TTTGCTCGATGATCCGAGCCGTCTTCTCACATCTAGTCAGTCAGAATCAGGGAACGGTGA 1234
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1280 TTTGCTTGATGATCCGGGCCGTCTTCTCACATCTAGTCAGTCAGAATCAGGGAATGGTGA 1339
Query 1235 GGACAGTGGCAGGAAGAGAAAGAAGTCTTTCTCGGATCCAGAGGACACCAGTGAATCTCT 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 GGACAGTGGCAGGAAGAGAAAGAAGTCTTTCTCGGATCCAGAGGACACCAGTGAATCTCT 1399
Query 1295 GTGTAATCAGTATGACTCTTCTGAGGAGGTTTCTTCAGGTCATAATTCAAACTCTTCAAG 1354
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1400 GTGTAATCAGTATGACTCTTCTGAGGAGGTTTCTTCAGGTCATAATTCAAACTCGTCAAG 1459
Query 1355 AGCTCTAATAGCTGATTATGATGATAGTCTCATGAGCAAAAGAGTCGTGAAGAACAAAAC 1414
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1460 AGATCTAATAGCTGATTATGATGATAGTCTCATGAGCAAAAGAGTCGTGAAGAACAGAAC 1519
Query 1415 GGTAAGACGGGAGCTGAGGAGGCAACAACGGATATTTTCTGAAAGAATATGCGAAGTCTG 1474
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1520 GGTAAGACGGGAGCTGAGGAGGCAACAACGAATATTTTCTGAAAGAATATGCGAAGTCTG 1579
Query 1475 TAAACAAAAGATGCTTCCAGGGAAAGATGCGGCAGCAATACTAAACATGAAGACAGGAAA 1534
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1580 TAAACAAAAGATGCTTCCAGGGAAAGATGCGGCAGCAATACTAAACATGAAGACGGGAAA 1639
Query 1535 TCTTGCGTGTGGCAGCAGAAACCTCCTGGGGGCGTTTCATCTTTTTCACGTGTCATGTGT 1594
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1640 TCTTGCTTGTGGCAGCAGAAACCTCCTGGGGGCGTTTCATCTATTTCATGTGTCGTGTGT 1699
Query 1595 CGTACACTGGTTTCTCTTCTGTGAGAGTGAAATACTTGGGAACAAGATGGTGAGTGGAAA 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 CGTACACTGGTTTCTCTTCTGTGAGAGTGAAATACTTGGGAACAAGATGGTGAGTGGAAA 1759
Query 1655 AGGAAAAAAGAGATGCACAAAGCATAGTAGTGGTCAGACTGGTGTGAAGTGGAATGAGTT 1714
|||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||
Sbjct 1760 AGGAAAAAAGAGATGCACAAAGCATAGT-G-G-TCAGACTGGTGTAAAGTGGAATGAGTT 1816
Query 1715 GGCAAACGATGTGAGCTGGCAAATATTTTCAGTGTTCTGTCCAGAATGCCAAGGCACTGG 1774
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1817 GGCAAACGATGTGAGCTGGCAAATATTTTCGGTGTTCTGTCCAGAATGCCAAGGCACTGG 1876
Query 1775 CATAAATATCGAAGGAGGTGTTATTGAGAGAGACACGTTTCCACTTTCTCAGACATGGAG 1834
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1877 CATAAATATCGAAGGAGCTGTGATTGAGAGAGACACGTTTCCACTTTCTCAGACATGGAG 1936
Query 1835 GTTCCAGGTGAAAGTGAGTGAAGGTAGAAAAGCATGGGTGAAAAATCCGGAGAAATTGAA 1894
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1937 GTTCCAGGTGAAAGTGAGTGAAGGTAGAAAAGCATGGGTTAAAAATCCGGAGAGATTGAA 1996
Query 1895 GAATTGCTCAACAGGTTTTCATTTTCCGCAGCAGGCTGACGAGTCGGGTCAGATTCCGGT 1954
|||||||||||| || ||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct 1997 GAATTGCTCAACCGGATTTCATTTTCCGCAGCAGGCTGAGGAGACGGAACAGATTCCGGT 2056
Query 1955 TCAGGAGGAGAGAGTGCAGATGATGAAACTGGTTCGTTTCTACCGAGTGGAGTTGTAATG 2014
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2057 TCAGGAGGAGAGAGTGCAGATGATGAAACTGGTTCGCTTCTACCGAGTGGAGTTGTAATG 2116
Query 2015 TAGGAAACAAACTCATTTCCTCCTGTGTGTAAATAAGGGCTTCGTCTCGCATTTTACAGT 2074
||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 2117 TAGGAAACATACTCATTTCCTC-T-TGTGTAAATAAGGGCTTCGTCTCTCATTTTACAGT 2174
Query 2075 TCTCTGTAAATTTACATTGACGATGTTACTATCTGAT 2111
|| ||||||||||||||| || | ||||||||||||
Sbjct 2175 TCACTGTAAATTTACATTTACTTTCTTACTATCTGAT 2211
Score = 612 bits (331), Expect = 5e-174
Identities = 404/437 (92%), Gaps = 14/437 (3%)
Strand=Plus/Plus
Query 1 TTTCTTCAATTTCGGTTAAAACA-TTTCTTTCTTTCTTCTTTTAACAACAAACCACCGCT 59
|||||||||||||||||||| || |||| ||||||||||||||||||| |||||||||||
Sbjct 5 TTTCTTCAATTTCGGTTAAACCATTTTCGTTCTTTCTTCTTTTAACAAGAAACCACCGCT 64
Query 60 CTGAACaaaa-aaaTTCTCCGTCGTTTCTTCTCCGTTCTCCGGTCAATTTTG-ATTCCTC 117
||| |||||| ||| |||||||||||||||||||||||||||||||| || | |||||||
Sbjct 65 CTGTACAAAACAAAGTCTCCGTCGTTTCTTCTCCGTTCTCCGGTCAA-TTCGAATTCCTC 123
Query 118 AGAGAGAGAAATTTGTGTTCGCGAGTTCCGCGTGAAATACATGGAAATGTTGGCGGCGAT 177
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 124 --AGAGAGAAATTTGTGCTCGCGAGTTCCGCGTGAAATACATGGAAATGTTGGCGGCGTT 181
Query 178 GGACTCGCGTTCTTCTTCTCTCCATCTTCATCGTTCCATGTCTCGCGTTGACCTTTTTGC 237
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GGACTCGCG---TTCTTCTCTCCATCTTCATCGTTCCATGTCTCGCGTTGACCTTTTTGC 238
Query 238 CGGTGTTCGAATGAAACCATCCCCTACAAGTCCTCTACCGAATACGCCTCGAATATGTGG 297
||||||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 239 CGGTGTTCGTATGAAACCATCTCCTACAAGTCCTGTTCCGAATACGCCTCGAATATGTGG 298
Query 298 AAGCAAACTCTGTTGATTCCACTCTTCCTCTTCCCTTTGGTAGTTC-TGCGGTTTGCTTT 356
||| ||||||||||||||| |||||||||||||||||| ||||||| | || |||| |||
Sbjct 299 AAGTAAACTCTGTTGATTCGACTCTTCCTCTTCCCTTTAGTAGTTCCTCCG-TTTGTTTT 357
Query 357 TCCTTTGCATCTGAATTTCGAGATCCAATCGAAGCTGTGATTACCGGTAGCGTCTTTGTG 416
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||
Sbjct 358 TCCTTTGCATCTGAATTTCCAGATCCAATCGAAGCTGTGATTACCTGTAGCGTCTT-GTG 416
Query 417 TAGTCTT-TTTCTAGGt 432
||||||| ||| |||||
Sbjct 417 TAGTCTTATTT-TAGGT 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104668136325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5