BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491950
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28250.1 | Symbols: ATEXPB3, EXPB3, ATHEXP BETA 1.6 | expans... 1965 0.0
> AT4G28250.1 | Symbols: ATEXPB3, EXPB3, ATHEXP BETA 1.6 | expansin
B3 | chr4:14000038-14002069 REVERSE LENGTH=1327
Length=1327
Score = 1965 bits (1064), Expect = 0.0
Identities = 1216/1289 (94%), Gaps = 12/1289 (1%)
Strand=Plus/Plus
Query 1 CTCTCACTCTCTCACTGTCGGCGAAGTAACATT-TTCACTTTTCCGGCTCCGATTCTGCT 59
|||||||||||||||||||||| || |||| || |||||||||||||| | |||||||||
Sbjct 42 CTCTCACTCTCTCACTGTCGGCAAACTAAC-TTATTCACTTTTCCGGCACTGATTCTGCT 100
Query 60 CGGAAAAAACAACTCCGGCAGAAAATGCAGCTCTCTCCGGTCATGTTAGCCACACTCTGC 119
||| |||||||||||||||| ||||||||||| | ||| |||||||||||||||||||||
Sbjct 101 CGGGAAAAACAACTCCGGCACAAAATGCAGCTTTTTCCAGTCATGTTAGCCACACTCTGC 160
Query 120 ATTGTCCTGCAGCTTCTAATTGGCTCGTCTGCTTTGTCTACGACTAATCGCCACGTGTCA 179
||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 161 ATTGTCCTGCAGCTTCTCATTGGCTCGTCAGCTTTGGCTACGACAAATCGCCACGTGTCA 220
Query 180 AACTCTCATTGGCTTCCCGCAGTCGCTACATGGTACGGAAGCCCCAACGGCGACGGCAGC 239
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 221 AACTCTCATTGGCTTCCCGCAGTAGCTACATGGTACGGAAGCCCCAACGGTGACGGCAGC 280
Query 240 GACGGAGGAGCGTGTGGGTACGGTACGTTGGTGGATGTGAAGCCGTTACATGCGAGGGTT 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GACGGAGGAGCGTGTGGTTACGGTACGTTGGTGGATGTGAAGCCGTTACATGCGAGGGTT 340
Query 300 GGAGCCGTGAATCCTATTCTCTTCAAAAACGGTGAAGGTTGTGGAGCTTGTTACAAGGTT 359
||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 341 GGAGCGGTGAATCCAATTCTCTTCAAAAATGGTGAAGGTTGCGGAGCTTGTTACAAGGTT 400
Query 360 CGGTGCTTGGACAAGAGCATTTGTTCCCGGAGAGCCGTCACCGTTATAATCACCGATGAG 419
|| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 401 CGATGCTTGGACAAGAGCATTTGTTCCCGGAGAGCCGTTACCGTCATAATTACCGATGAG 460
Query 420 TGTCCCGGCTGCTCTAAAACCAGCACTCACTTTGACCTCAGTGGTGCCGTCTTTGGCCGG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TGTCCCGGCTGCTCTAAAACCAGCACTCACTTTGACCTCAGTGGTGCCGTCTTTGGCCGG 520
Query 480 TTGGCTATTGCCGGAGAGTCTGGCCCTCTCCGTAACCGTGGGCTAATCCCCGTCATATAT 539
|| ||||||||||||||||| || ||||||||||||||||| |||||||| ||||| |||
Sbjct 521 TTAGCTATTGCCGGAGAGTCAGGGCCTCTCCGTAACCGTGGACTAATCCCAGTCATTTAT 580
Query 540 CGCCGGACTGCATGCAAATATAGAGGGAAGAACATAGCGTTCCATGTGAACGAAGGATCA 599
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 581 CGCCGGACTGCATGCAAATATAGAGGGAAGAACATAGCATTCCATGTGAACGAAGGATCA 640
Query 600 ACTGATTTTTGGCTATCTTTGCTGGTCGAGTTTGAAGACGGAGAAGGAGACATTGGCTCC 659
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 641 ACTGATTTTTGGCTATCTCTGCTGGTCGAGTTTGAAGATGGAGAAGGAGACATTGGCTCC 700
Query 660 ATGTACATTCGCCAAGCAGGAGCGAGGGAATGGTTAGAGATGAAGCATGTATGGGGAGCC 719
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 701 ATGCACATTCGCCAAGCAGGAGCCAGGGAATGGTTAGAGATGAAGCATGTATGGGGAGCC 760
Query 720 AACTGGTGCATCGTTGGAGGACCACTCAAGGGACCATTCTCCGTAAAGCTCACCACTTTG 779
|||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 761 AACTGGTGCATCATTGGAGGGCCACTCAAGGGACCATTCTCCATCAAGCTCACCACTTTG 820
Query 780 TCTGCCGGTAGAACACTCTCCGCCACCGACGTTGTCCCTAGAAACTGGACTCCCAAAGCC 839
|||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 821 TCTGCCGGTAAAACACTCTCTGCCACCGACGTTGTCCCTAGAAACTGGGCTCCCAAAGCA 880
Query 840 ACTTACAGTTCCCGCCTCAACTTCTCCCCCGTTCTCTGAACCAACTCTTCTACATAGTCA 899
||||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||
Sbjct 881 ACTTACAGTTCCCGCCTCAACTTCTCCCCTGTCCTTTGAACCATCTCTTCTACATAGTCA 940
Query 900 AAGACTATTATTGTTCCTATTA-TACTACTACTCGTGTGATCGtttttttA-AGAGAGAA 957
||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 941 AAGACTATTATAGTTC-TATTACTACTACTACTCGTGTGATCGTTTTTTTTTAGAGAGAA 999
Query 958 ACAGAGTGACTGCTGGCCGTAGGATGGAAACAATAAGAAAAGTACATCCGAATCAACGGC 1017
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1000 ACAGAGTGACTGCTGGCCGTAGGATGGAAACAGTAAGAAAAGTACATCCGAATCAACGGC 1059
Query 1018 TCTTGCGTTCTCTCCTCTTCCTTCTtgtgtgctgtggatttgtgtgtgtgttgtgatgtg 1077
| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 1060 TATTGCGTTCTCTCCTCTTCCTTCTTGTGA--TGTGGATTTGTGTGTGTGT-G--ATGTG 1114
Query 1078 tcggtgagtgtgtTAG-GA-GTCACTGTAGCCATCTTCAAAGGGGAGATAGAGCTAGGAG 1135
||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 1115 TCGGTGAGTGTGTTATAGAAGTCACTATAGCCATCTTCAAAGGGGAGATAGAGCTAGGAG 1174
Query 1136 TAGTATTTGGTGGTGTCATGTCTTTTGTTTTTTCTATATAATTCTTGTCACTATCTCTTT 1195
|||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |||||
Sbjct 1175 TAGTATTTGGTGGTGTCACGTCGTTTGTTTTTTCTATATAATTTTTGTCACTATGTCTTT 1234
Query 1196 CTATTATGGGACATGACATTATATATCATATGAATAATTTATCACTATGTCTTTCTATTG 1255
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 CTATTATGGGACATGGCATAATATATCATATGAATAATTTATCACTATGTCTTTCTATTG 1294
Query 1256 TGGGACATTACATAATAATGTATCATATG 1284
||||||||||||||||||||||| |||||
Sbjct 1295 TGGGACATTACATAATAATGTATGATATG 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5