BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491951
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28240.1 | Symbols: | Wound-responsive family protein | chr... 470 1e-131
> AT4G28240.1 | Symbols: | Wound-responsive family protein | chr4:13997292-13998347
REVERSE LENGTH=1056
Length=1056
Score = 470 bits (254), Expect = 1e-131
Identities = 280/293 (96%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 46 TATAATCACTATTAAACCATGAGTTATCTGAACAAAGTGTGGATGGCTGCATCATTCGTA 105
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 91 TATAATCACTATTAAAGAATGAGTTATCTGAACAAAGTGTGGATGGCAGCATCGTTCGTA 150
Query 106 GCTGTTCAAGGTAACGCCGATCACGGCGTCAAGTTGAAAAGCGGTCTCACCTCTGCTCAC 165
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 151 GCTGTTCAAGGAAACGCCGATCACGGCGTCAAGTTAAAAAGCGGTCTCACCTCTGCTCAC 210
Query 166 CGTCTCCAACGAAGACTTTCCTCCGATCTCCGCCCTCTCGCCGCCGCAGATCTAACAGGA 225
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 211 CGTCTCCAACGAAGACTTTCCTCCGATCTCCGTCCTCTCGCCGCCGCAGATCTAACCGGC 270
Query 226 GACTCTCTCCCCTCGGAAGAAAGACGTCGTACCTCTTCTTCCACTCCTGATGAGTCTCTC 285
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 271 GACTCTCTCCCTTCGGAAGAAAGACGTCGTACCTCTTCTTCCACTCCCGATGAGTCTCTC 330
Query 286 CGCCAAGTCATGTACCTCAACTGCTGGGCTCAAGGCTAAATTCAGATGATGAT 338
|| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 331 CGACAAGTCATGTACCTCAACTGCTGGGCTCAAGGCTAAATTCAGATAATGAT 383
Score = 287 bits (155), Expect = 1e-76
Identities = 283/338 (84%), Gaps = 35/338 (10%)
Strand=Plus/Plus
Query 392 TCGCTTGAGTTGGATTTTCTGGATGCAACTGTGTATAGTTTTGGTTACATCTCTGTGAAT 451
|||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 485 TCGCTTGAGTCGGATTTTCTGGATGCAAC--TGTATAG-TTTGGTTACATCTCTGTGAAT 541
Query 452 ATTAGAATGTTCTAAGAGATCAAAGCAAGTGTTCGAATAT-ATGAGAACTCTGTTCATTT 510
||||||||||||||| ||||||||||||| || || ||| | |||||||||||||||||
Sbjct 542 ATTAGAATGTTCTAAAAGATCAAAGCAAGCCTTGGATTATGA-GAGAACTCTGTTCATTT 600
Query 511 TCTATATCT-AAAA-ATC-TG-G---A--A--T------C--T-TG-A-T-T-G----CG 542
||||||||| |||| ||| | | | | | | | || | | | | ||
Sbjct 601 TCTATATCTTAAAACATCGTTCGCTCACCAACTTTATTACAATCTGGAATCTTGATTGCG 660
Query 543 ATTACCACTAATTTCAACTTTATCCACAGTGAAATGCGATTCTCAATAAAATAATAGTAC 602
|||||||||||||||||||||||||||||| |||| ||||||| ||| ||| ||||||||
Sbjct 661 ATTACCACTAATTTCAACTTTATCCACAGTAAAATACGATTCTAAATTAAACAATAGTAC 720
Query 603 CAAA-TGATTCCAAAATCATCGTTATCTATTGAGACAGACAAGTCAGTCACTCCATAATG 661
||| | ||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 721 TAAAAT-ATTCCAAAACCATCGTTATCCAAAGAGACAGACAAGTCAGTCACTCCATAATG 779
Query 662 CTTCTATTTATTTATTTATAGTGGTTGTCATTATTGAG 699
||| ||||||||||| ||| ||||||||||||||||||
Sbjct 780 CTTTTATTTATTTATCTATTGTGGTTGTCATTATTGAG 817
Score = 211 bits (114), Expect = 8e-54
Identities = 133/142 (94%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 712 TCTTGGGCTA--TGGCCCATGAATGTAACTTGGCTTTGAATGAAATCGGAGCGCGTCTGC 769
|||||||||| |||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 910 TCTTGGGCTATTTGGCCCATTTATGTAACTTGGCTTTGAATGAAATCGGAGCGTGGCTGC 969
Query 770 TTCATCTAACGGTCCAAATCTCACGACGCTCCTTAATGGAGTAATGAGTAACGTCTCCTT 829
|| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 970 TTAATCCAACGGTCCAAATCTGACGACGCTCCTTAATGGAGTAATGAGTAACGTCTCCTT 1029
Query 830 CATTTCCAACGGTCAAATAATC 851
||||||||||||||||||||||
Sbjct 1030 CATTTCCAACGGTCAAATAATC 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5