BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491952
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28230.1 | Symbols: | unknown protein; Has 444 Blast hits t... 2285 0.0
> AT4G28230.1 | Symbols: | unknown protein; Has 444 Blast hits
to 358 proteins in 107 species: Archae - 0; Bacteria - 20;
Metazoa - 179; Fungi - 26; Plants - 38; Viruses - 2; Other Eukaryotes
- 179 (source: NCBI BLink). | chr4:13995779-13997307
REVERSE LENGTH=1529
Length=1529
Score = 2285 bits (1237), Expect = 0.0
Identities = 1447/1546 (94%), Gaps = 24/1546 (2%)
Strand=Plus/Plus
Query 1 GTCAAATAATCGTCAAGAAATACTCGCTGCTTCTCCTTCTTCTTCCTCAAGTGTCCCAAA 60
||||||||||| |||||||||||||||| | | ||||||||| ||||||||||| || ||
Sbjct 1 GTCAAATAATCCTCAAGAAATACTCGCTTC-T-TCCTTCTTCCTCCTCAAGTGT-CC-AA 56
Query 61 TTCTTTCT-CAGAACCCTAAATTTCTCGTCGAAGAAGATCGATTCGCTCTGAAAATGACT 119
|||||||| || ||||||||||||||||| |||||||||| | |||||||||| |||||
Sbjct 57 TTCTTTCTCCA-AACCCTAAATTTCTCGTAGAAGAAGATCAAATCGCTCTGAATATGACA 115
Query 120 TCAATTGAGGCAACAGAAACGCTTAACGCTCCTCCAAAGCTTCAGATCTGGAACAACGCT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TCAATTGAGGCAACAGAAACGCTTAACGCTCCTCCAAAGCTTCAGATCTGGAACAACGCT 175
Query 180 GCCTTCGACGATGGAGATTCTCAAATTACGTCCGCCATTGAAG---CTTCTTGGTCTCAC 236
|||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||
Sbjct 176 GCCTTCGACGATGGAGATTCTCAAATCACTTCCGCCATCGAAGCTTCTTCTTGGTCTCAC 235
Query 237 CTCAACGAATCATTCGATTCCGATTGTAGCAAGGAGAATCAGTCTCCGATTTCGGTTTCC 296
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 236 CTCAACGAATCATTCGATTCCGATTGTAGCAAGGAGAATCAGTTTCCGATTTCGGTTTCC 295
Query 297 TCTTCGCTCCGATCCTCAGTCTCGATCACCGAAGCTCCGTCAGCAAAATCCAAGATCGGG 356
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 296 TCTTCGCTCCAATCCTCAGTCTCGATCACCGAAGCTCCGTCAGCAAAATCCAAGACCGTG 355
Query 357 AAGACCAAATCCGGCGCAGATCGGAGTAAAAAGCGTGATGAACGAGATATCGATGCAGAG 416
||||||||||||| ||||||||||||| |||| | | ||||||||||||||||||
Sbjct 356 AAGACCAAATCCGCCGCAGATCGGAGT-AAAA-----A-G--CGAGATATCGATGCAGAG 406
Query 417 ATCGAAGAAGTAGAGAAGGAGATCGGACGGTTATCGACGAGATTGGAGTCGCTCCGATTA 476
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 407 ATCGAAGAAGTAGAGAAGGAGATCGGACGATTATCGACGAAATTGGAGTCGCTCCGATTA 466
Query 477 GAGAAGGCTGAGCAAACCGCAAGAAGTATCGCTATACGTGGAAGAATTGTTCCGGCGAAG 536
|||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 467 GAGAAGGCGGAGCAAACCGCAAGAAGCATTGCTATACGTGGAAGAATCGTTCCGGCGAAG 526
Query 537 TTCATGG-A--ATCTCAGAAACAAGTGAAATTCGATGAATCTTCTTTTACAGGATCCAAA 593
||||||| | |||||||||||||||||||||||| || || | |||||||||||| |||
Sbjct 527 TTCATGGAATCATCTCAGAAACAAGTGAAATTCGACGATTCGTGTTTTACAGGATCGAAA 586
Query 594 TCAAGAACCACTCGTAGAGGCGTTAGTCTTGGACCGGCGGAGATATTCAATTCTGCGAAG 653
|||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 587 TCAAGAGCCACTCGTAGAGGCGTTAGTCTTGGACCAGCGGAGATATTCAATTCCGCGAAG 646
Query 654 AAATCTGAAACTGTGACTCCTCTTCAATCAGCTCAGAATCGACGCAAGTCTTGTTTCTTT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AAATCTGAAACTGTGACTCCTCTTCAATCAGCTCAGAATCGACGCAAGTCTTGTTTCTTT 706
Query 714 AAGCTTCCTGGAATCGAAGAAGGTAAAGTGACGACAAGAGGTAAAGGAAGAACGAGTTTG 773
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 707 AAGCTTCCTGGAATCGAAGAAGGTCAAGTGACGACACGAGGTAAAGGAAGAACGAGTTTG 766
Query 774 AGTCTGAGTCCGAGATCTCGTAAAGCGAAAATGACGGCGGCTCAGAAGCAAGCAGCGACA 833
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 767 AGTCTGAGTCCGAGATCTCGCAAAGCGAAAATGACGGCAGCTCAGAAGCAAGCAGCTACG 826
Query 834 ACGGTGGGGTCTAAGAGAGCGGTGAAGAAAGAAGAAGGAGTTCTCTTATCAATCCAGCCT 893
||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 827 ACGGTGGGGTCAAAGAGAGCTGTGAAGAAAGAAGAAGGAGTTCTCTTAACAATCCAGCCT 886
Query 894 AAGAGGCTCTTCAAAGAAGATGAAAAGAATGTTTCTTTAAGGAAACCATTGAAACCAGGA 953
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AAGAGGCTATTCAAAGAAGATGAAAAGAATGTTTCTTTAAGGAAACCATTGAAACCAGGA 946
Query 954 AGAGTTGTGGCTAGTAGGTACAGTCAAATGGGCAAAACGCAGACTGGAGAGAAAGATGTA 1013
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 947 AGAGTTGTGGCTAGTAGGTACAGTCAAATGGGTAAAACGCAGACTGGAGAGAAAGATGTT 1006
Query 1014 AGGAAAAGGTCGTTACCTGAGAATGAAGAGAAAGAGAATAATCATAGGTCGGAGAAGAGA 1073
|||||||||||||| |||||| ||||||||||||||||| || | |||||||||||||||
Sbjct 1007 AGGAAAAGGTCGTTGCCTGAGGATGAAGAGAAAGAGAATCATAAGAGGTCGGAGAAGAGA 1066
Query 1074 AGAGCTTCTGATGAAAATAGCAACAAGAGTGAAGGGAGAGTGAAGAAGAGATGGGAGATT 1133
|||||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 1067 AGAGCTTCTGATGAAAGTA--A-CAAGAGTGAAGGGAGAGTGAAGAAGAGATGGGAGATT 1123
Query 1134 CCAAGTGAAGTTGATCTGTATAGCAGTGGTGTGAATGATGACGTGTCTCCTATAGGCAAG 1193
||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||| |||
Sbjct 1124 CCAAGTGAAGTTGATCTGTATAGCAGTGGTGAGAACGGTGACGAGTCTCCTATAGTTAAG 1183
Query 1194 GAGCTTCCTAAGATCAGAACGCTTCGTCGTTTGGGAGGGAGCCCTCGTGATTCAGGTGCT 1253
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1184 GAGCTACCTAAGATCAGAACGCTTCGTCGTGTGGGAGGGAGCCCTCGTGATTCAGGTGCT 1243
Query 1254 GCAAAGAGAGTTGCGGAATTACAAGCCAAGGATCGTAATTTCACTTTTTGCCAGCTTCTG 1313
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1244 GCTAAGAGAGTTGCAGAATTACAAGCCAAGGATCGTAACTTCACTTTTTGCCAGCTTCTG 1303
Query 1314 AGGTTTGAAGAATGAATGACCCGGTTATCAATTTGAGTAAAAACCTCAACTCTTGTTGTG 1373
| ||||||||||||||||| ||| |||||||||||||||||| || ||||||||||||||
Sbjct 1304 AAGTTTGAAGAATGAATGATCCGCTTATCAATTTGAGTAAAATCCACAACTCTTGTTGTG 1363
Query 1374 GTGACTTGATTGTGAATTTGGTTGGTTTTGATTTTGTTTTTCGGCTTGCATAGCAAGAAT 1433
|| ||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||
Sbjct 1364 GTTACTTGATTGTGAATTTGTTTGGTTTTGATTTTGTTTTTCGGCTCGCAGAGCAAGAAT 1423
Query 1434 ATTTGTTGGAATGCTTAATGTCTTGGCTTCATACACATTAAGATTGTGAGTTTTTGTTAT 1493
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1424 CTTTGTTGGAATGCTTAATGTCTTTTCTAAATACACATTAAGATTGTGAGTTTTTGTTAT 1483
Query 1494 CTTTTGTAAATGTCAACTTCATGAAGAAAGATTCTTTCAAACGGTT 1539
||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1484 CTTTTGTAAATGTCAGCTTCATGAAGAAAGATTCTTTCAAAAGGTT 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75953424585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5