BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491956
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28190.2 | Symbols: ULT1 | Developmental regulator, ULTRAPET... 970 0.0
> AT4G28190.2 | Symbols: ULT1 | Developmental regulator, ULTRAPETALA
| chr4:13985178-13987442 FORWARD LENGTH=1774
Length=1774
Score = 970 bits (525), Expect = 0.0
Identities = 659/715 (92%), Gaps = 43/715 (6%)
Strand=Plus/Plus
Query 487 AGACAAGTTGACACCAGCTGCATTCGAGAAGCATTCTGGAAGAGAAACGGCTAGGAAGTG 546
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 881 AGACAAGTTGACACCAGCTGCATTCGAGAAGCATTCTGGAAGAGAAACGGCAAGGAAGTG 940
Query 547 GAAAAACAATGTGTGGGTTATCATTGGTGGCGAAAAGGTTCCATTGTCAAAGACAGTATT 606
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 941 GAAAAACAATGTGTGGGTTATCATTGGGGGCGAAAAGGTTCCATTGTCAAAGACAGTATT 1000
Query 607 GCTCAAATACTACAATGAATCATCAAAGAAGTGCAGTAGATCAAACAGATCACAAGGTGC 666
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 GCTCAAGTACTACAATGAATCATCAAAGAAGTGCAGTAGATCAAACAGATCACAAGGTGC 1060
Query 667 CAAAGTTTGCCATAGAGATGAGTTTGTTGGGTGTAACAAATGTGGTAAAGAGAGGAGGTT 726
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1061 CAAAGTTTGCCATAGAGATGAGTTTGTTGGGTGTAACGATTGTGGTAAAGAGAGGAGGTT 1120
Query 727 CAGGCTGAGGAGCAGAGACGAATGCCGCTTGCACCACAATGCAATGGCTGATCCGAACTG 786
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1121 CAGGCTGAGGAGCAGAGACGAATGCCGCTTGCACCACAATGCAATGGGTGATCCAAACTG 1180
Query 787 GAAATGCTCAGATTTCCCATACGACAAGATAACATGTGAGGAGGAAGAAGAGAGAGGGAG 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GAAATGCTCAGATTTCCCATACGACAAGATAACATGTGAGGAGGAAGAAGAGAGAGGGAG 1240
Query 847 CAGGAAGGTGTACAGAGGCTGCACACGTTCACCTAGTTGCAAAGGCTGCACTTCCTGCGT 906
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CAGGAAGGTGTACAGAGGGTGCACACGTTCACCTAGTTGCAAAGGCTGCACTTCCTGCGT 1300
Query 907 CTGTTTTGGCTGCGAGTTATGCCGTTTCTCTGAATGTACTTGCCAGACTTGTGTCGACTT 966
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1301 CTGTTTTGGCTGCGAGTTATGCCGTTTCTCTGAGTGTACTTGCCAGACTTGTGTCGACTT 1360
Query 967 CACCAGCAATGTCAAAGCTTGAAGAAGGCa----a--aa-aaaa----------TGTCTG 1009
|||||||||||||||||||||||||||||| | || |||| ||||||
Sbjct 1361 CACCAGCAATGTCAAAGCTTGAAGAAGGCAGTCCATTAAGAAAAGAAAAAAAAATGTCTG 1420
Query 1010 TCTCAGACTTTGTTCGGTGCATTTAATAACTT-TT--A----TC-------TTA-T---C 1051
|||||||||||||||| ||||||||||||||| || | || ||| | |
Sbjct 1421 TCTCAGACTTTGTTCGTTGCATTTAATAACTTATTCTAAAACTCCAAACAGTTAATTATC 1480
Query 1052 T-AT----GGGTAGTGAATGGAGCAATTaaaaaaaaaagtagaaaaaaaGTTGATTTCCA 1106
| || |||| ||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 1481 TTATCTATGGGTTGTGAATGGAGCAATTGAAAAAAAA-GTAGAAAAA--GTTGATTTCCA 1537
Query 1107 AGAAGAACATGCAGACGAGCATGCCTGAGTTTAGTGCATGTCTTGATTTTTGGCT 1161
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1538 AGAAGAACATGCAGACGAGCATGCCTGAGTTTAGTGCATGTCTAGATTTTTGGCT 1592
Score = 732 bits (396), Expect = 0.0
Identities = 462/492 (94%), Gaps = 11/492 (2%)
Strand=Plus/Plus
Query 1 AGAGAGGCTAAAATAAAAAGCGctctctttcttattaattttctctctcttctcttctcC 60
|||||||||||| | ||||| ||||||||||| ||| | |||||||||||||||||||||
Sbjct 305 AGAGAGGCTAAACT-AAAAGAGCTCTCTTTCTAATTTA-TTTCTCTCTCTTCTCTTCTCC 362
Query 61 CGAAAAGCCCTTAATAAGCTTTTGCTTTGATATCAGATCTCTCTTACGGCTTTTGAGATG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CGAAAAGCCCTTAATAAGCTTTTGCTTTGATATCAGATCTCTCTTACGGCTTTTGAGATG 422
Query 121 CGTGCTCCTTTAGGGCTTTCCTTTTATACCCAAAAACGAGGcctttccttcttctctcat 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 423 CGTGCTCCTTTAGGGCTTTCCTTTTATACCCCAAAACGAGGCCTTTCCTTCTTCTCTCAT 482
Query 181 ctactaattctaacctcttcctcttcttcttccttgtctctctctcctt-tt-tc-tcAT 237
|| ||||||||| ||||||||||||| |||||||| ||||||||| || || || ||||
Sbjct 483 CTCCTAATTCTACCCTCTTCCTCTTCCTCTTCCTTCTCTCTCTCTTCTCATTCTCCTCAT 542
Query 238 ACGCTATAAGGAGGAA-TCTCACAGAGAAGAGAGAAAGATGGCGAGTAATGAGGAAGAGA 296
||||||||||||| || ||||| |||| ||||| |||||||| ||||||| |||||
Sbjct 543 ACGCTATAAGGAGAAAATCTCA--GAGA-GAGAGT--GATGGCGAACAATGAGGGAGAGA 597
Query 297 TGCAATGTGGGTCCATGTTGTTCAAGCAAGAGGAGCTACAAGAGATGAGTGGGGTCAATG 356
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 598 TGCAATGTGGGTCCATGTTGTTTAAGCAAGAGGAGCTACAAGAGATGAGTGGGGTCAATG 657
Query 357 TTGGTGGCGATTACGTTGAGGTCATGTGTGGTTGTACCAGTCACCGATACGGCGATGCTG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTGGTGGCGATTACGTTGAGGTCATGTGTGGTTGTACCAGTCACCGATACGGCGATGCTG 717
Query 417 TTGCTAGACTTAGGGTTTTCCCCACCGGTGACCTTGAAATCACCTGTGAATGCACACCCG 476
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 718 TTGCTAGACTTAGGGTTTTCCCCACCGGTGACCTTGAAATCACCTGCGAATGCACACCTG 777
Query 477 GTTGCGATGAAG 488
||||||||||||
Sbjct 778 GTTGCGATGAAG 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5