BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491957
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1258 0.0
> AT4G28180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 15 plant structures; EXPRESSED DURING: 8 growth stages;
Has 1508 Blast hits to 1315 proteins in 223 species: Archae
- 4; Bacteria - 127; Metazoa - 687; Fungi - 310; Plants -
142; Viruses - 28; Other Eukaryotes - 210 (source: NCBI BLink).
| chr4:13982796-13983717 REVERSE LENGTH=922
Length=922
Score = 1258 bits (681), Expect = 0.0
Identities = 858/936 (92%), Gaps = 42/936 (4%)
Strand=Plus/Plus
Query 1 gagagagagagagGCATTAGCAAAAGTAGAAAG-AAATGGGATGCTGCTTCAGCGCCGGA 59
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 GAGAGAGAGAGAGGAATTAGCAAAAGTAGAAAGAAAATGGGATGCTGCTTCAGCGCCGGA 60
Query 60 AAAGTCACAGCTCCACCAGTCGCCGCCGCTCAAGTTCCTCCACCCATTGAAGAAGAATCC 119
||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 61 AAAGTCACAGCTCCACCAGTCGCCGCCGCTCAAATTCCTCCACCCCTCGAAGAAGAATCC 120
Query 120 GTCAAAGAAGTCGTGGTCCAATCGGTCTCTGTCTCCGT-CCC-T----A------TCCC- 166
|||||||||||||| || ||||| |||||||||||||| ||| | | ||||
Sbjct 121 GTCAAAGAAGTCGTTGTTCAATCAGTCTCTGTCTCCGTCCCCATACCCATCTCCGTCCCT 180
Query 167 -T----GTCCCCGACCTCGTTCCTTCCGCACCAACAGTATCAGATTCAGAAGCTCAAGTT 221
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GTCCCAGTCCCCGACCTCGTTCCTTCCGCACCAACAGTCTCAGATTCAGAAGCTCAAGTT 240
Query 222 CCTCGTCCTCTCTCACCACCAGCTCCGGAGATCTCTCAAAACAAGTCCGACATTTGCAGC 281
|||| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 241 CCTCTTCCTCTCTCACCTCCAGCTCCGGAGATCTCTCACAGCAAGTCCGACATTTGCAGC 300
Query 282 GTCTCTGTCTCTCACAGCTACTCCACCGCTACTACTGCTACTACTGCTACCGCTGCTTCC 341
|||||||||||||||||||||||||| || | | | | |||||||||||||| |||
Sbjct 301 GTCTCTGTCTCTCACAGCTACTCCACTGC--C-A---C-A--ACTGCTACCGCTGCGTCC 351
Query 342 ATACTCGAAGACGATGCTCTCAGCAAACCCCACCGTCCTCCTCCTCCTTCTGCCTCCACC 401
|| |||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||
Sbjct 352 ATCCTCGAAGACGATGCTCTCAGCAAACCTCACCGTCCTCCTCCTCCTTCTTCTTCCACC 411
Query 402 TCTCGCCGCAACAGGCCTGACAGAGTCCTCAGATCTCCAGCGGAACGGCATTCTCCTCAA 461
|||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 412 TCTCGCCGTAACAGGCCTGACAGAGTCCTCAGATCTCCGGCAGAACGACATTCTCCTCAG 471
Query 462 GGGAAGCAGCTCCGTCCCAGGTTAGTCCGAGAGAGACAGTCTCGTCAACCAAACTCTACT 521
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 472 GGGAAGCAGCTCCGTCCTAGGTTAGTCCGAGAGAGACAGTCTCGTCAACCAAACCCTACT 531
Query 522 CACAACCGTCGAAATGTGGATTCGGGTCCACTCCCACGGAGCGGGTTATCGGATAATCCA 581
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CACAACCGGCGAAATGTGGATTCGGGTCCACTCCCACGGAGCGGGTTATCGGATAATCCG 591
Query 582 AGGCGTCGCTCACAGTCTCCGGCCACTCGTGGCCCGAGTTCCGCAAGAAGAAGCCCCATG 641
|||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||
Sbjct 592 AGGCGTCGCTCACAGTCTCCAGCCACTCGTGCCCCGAGTTCTGCAAGAAGAAGCCCCATG 651
Query 642 AAGAAACGAGTAGGAGCTCCGGAGAAAGACGGAGCAACAGAGGTgaagaagaaggaagaa 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AAGAAACGAGTAGGAGCTCCGGAGAAAGACGGAGCAACAGAGGTGAAGAAGAAGGAAGAA 711
Query 702 gaagaag-aggcaaaagtaactgttgaggtaaagaaggaagaagaTGTAACAACTGTGAG 760
||| | | || ||| ||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 712 GAA-ACGGAG--AAA-GTAACTGCTGAGGTAAAGAAGGAAGAAGATGTAACAGCTGTGAG 767
Query 761 AGACCCTGAAGTGTCCATGGAATGCTTCATCTTTCTCTGATGATCTCTTCTACTTTCATC 820
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 768 AGACCCTGAAGTGTCCATGGAATGCTTCATCTTTCTCTGATGATCTCTTCTCCTTTCATC 827
Query 821 ATTATTAACTCTGATGTGATTGATTGtttttt--c---cc-tttttt-GATTTGTAAATT 873
|||||||||||||||||||||||||||||||| | || |||||| ||||||||||||
Sbjct 828 ATTATTAACTCTGATGTGATTGATTGTTTTTTTTCTTTCCCTTTTTTTGATTTGTAAATT 887
Query 874 GCGGAATGTGTAATATTATTAACCAAATCTTTTGCG 909
||||||||| |||| | |||||||||||||| ||||
Sbjct 888 GCGGAATGTATAAT-T-ATTAACCAAATCTTATGCG 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5