BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491959
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28160.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 688 0.0
AT4G28162.1 | Symbols: | Potential natural antisense gene, loc... 654 0.0
> AT4G28160.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr4:13980316-13981001 FORWARD LENGTH=686
Length=686
Score = 688 bits (372), Expect = 0.0
Identities = 521/589 (88%), Gaps = 26/589 (4%)
Strand=Plus/Plus
Query 1 TCTCTTCCATCTTCCCTCCACAAACCAAACATTCAAGCTCTATACCATTGATTCTCTACT 60
||||||||||||||||||||||||||| ||||||||||||| |||| || || ||| |||
Sbjct 7 TCTCTTCCATCTTCCCTCCACAAACCACACATTCAAGCTCT-TACCTTTTATCCTCAACT 65
Query 61 AACACAACAATGGCTTCTACTCTGCAAAATCTGATTCTGACCACAATTTG-TCTGGTAAG 119
|||||||||||||||| ||||||||||||||||| | | |||||| ||| |||||||||
Sbjct 66 AACACAACAATGGCTTATACTCTGCAAAATCTGA--CAG-CCACAA-TTGTTCTGGTAAG 121
Query 120 CCTGCTTCTTGGATGTACAGAGGAAGTAAGCGGAGTGCGTTACATTCCCAACTCCCCCAC 179
|||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 122 CCTGATTCTTGGATGTACAGAGGAAGTAACCGGAATGCGTTACATTCCCATTTCCCCCAC 181
Query 180 TCCCAGTGAGAGCAAACATTCAGACTTTCTTGTGAACATGGTGCCTCAACCATCTGGTCT 239
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||
Sbjct 182 TCCCAGTGAGAGCAAACATTCAGACTTTCCTGTAAACATGGTGCCTCAACCATCTAGTCT 241
Query 240 CATTCCTGGTTTTGGAAGGTTCTTGCTTCCTCCCACACCTAAGCTGCCATTCCTTCCTTA 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 242 CATTCCTGGTTTTGGAAGGTTCTTGCTACCTCCCACACCTAAGCTGCCATTCCTTCCTTA 301
Query 300 CAAAGATCCCCTTGCTGCTGCCCCAACCACTTCTCATGGAATTCCTATTTGTTATAAAGC 359
||||||||||||||||| ||||||| ||||||| |||||| ||||| || |||||||
Sbjct 302 CAAAGATCCCCTTGCTGTTGCCCCAGCCACTTCAAATGGAACTCCTA---GTAATAAAGC 358
Query 360 TCGCAGTCCGAGTTCACGAGAAGAACAAGTTCCACCAGTGCCACAACCATGACCTGTCAA 419
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 CCGCAGTCCGAGTTCAGGAGAAGATGAAGTTCCACCAGTGCCACAACCATGACCTGTCAA 418
Query 420 CAAATAAGCATTTGCTAGATACAAAAGAGTCTTCAATTCTGGTTTACACAACAAGTCTAC 479
||||||||| |||||||||| || ||| || ||||||||||||| ||| ||||||| |||
Sbjct 419 CAAATAAGCTTTTGCTAGATGCAGAAGGGTATTCAATTCTGGTTCACATAACAAGTATAC 478
Query 480 TACTACCATATCATCAGAGTCATATATCTTTGTGATCTCTCTCTG-ATAT--T---GA-- 531
|| | | || |||||| ||||||||||||| |||||||||||| |||| | ||
Sbjct 479 TAGT-C-ATTTCATCATAGTCATATATCTTCATGATCTCTCTCTATATATACTTAAGAGG 536
Query 532 AT---GAAT---T-CTAGAGCTTTTGCTTACATACTATCTAAGAATAAT 573
|| |||| | | |||||||||||||||||||||||||| ||||||
Sbjct 537 ATATTGAATAAATTCCAGAGCTTTTGCTTACATACTATCTAAAAATAAT 585
> AT4G28162.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT4G28160 | chr4:13980327-13980820 REVERSE
LENGTH=494
Length=494
Score = 654 bits (354), Expect = 0.0
Identities = 456/504 (90%), Gaps = 11/504 (2%)
Strand=Plus/Minus
Query 6 TCCATCTTCCCTCCACAAACCAAACATTCAAGCTCTATACCATTGATTCTCTACTAACAC 65
|||||||||||||||||||||| ||||||||||||| |||| || || ||| ||||||||
Sbjct 494 TCCATCTTCCCTCCACAAACCACACATTCAAGCTCT-TACCTTTTATCCTCAACTAACAC 436
Query 66 AACAATGGCTTCTACTCTGCAAAATCTGATTCTGACCACAATTTG-TCTGGTAAGCCTGC 124
||||||||||| ||||||||||||||||| | | |||||| ||| |||||||||||||
Sbjct 435 AACAATGGCTTATACTCTGCAAAATCTGA--CAG-CCACAA-TTGTTCTGGTAAGCCTGA 380
Query 125 TTCTTGGATGTACAGAGGAAGTAAGCGGAGTGCGTTACATTCCCAACTCCCCCACTCCCA 184
|||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||
Sbjct 379 TTCTTGGATGTACAGAGGAAGTAACCGGAATGCGTTACATTCCCATTTCCCCCACTCCCA 320
Query 185 GTGAGAGCAAACATTCAGACTTTCTTGTGAACATGGTGCCTCAACCATCTGGTCTCATTC 244
|||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||
Sbjct 319 GTGAGAGCAAACATTCAGACTTTCCTGTAAACATGGTGCCTCAACCATCTAGTCTCATTC 260
Query 245 CTGGTTTTGGAAGGTTCTTGCTTCCTCCCACACCTAAGCTGCCATTCCTTCCTTACAAAG 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 259 CTGGTTTTGGAAGGTTCTTGCTACCTCCCACACCTAAGCTGCCATTCCTTCCTTACAAAG 200
Query 305 ATCCCCTTGCTGCTGCCCCAACCACTTCTCATGGAATTCCTATTTGTTATAAAGCTCGCA 364
|||||||||||| ||||||| ||||||| |||||| ||||| || ||||||| ||||
Sbjct 199 ATCCCCTTGCTGTTGCCCCAGCCACTTCAAATGGAACTCCTA---GTAATAAAGCCCGCA 143
Query 365 GTCCGAGTTCACGAGAAGAACAAGTTCCACCAGTGCCACAACCATGACCTGTCAACAAAT 424
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 142 GTCCGAGTTCAGGAGAAGATGAAGTTCCACCAGTGCCACAACCATGACCTGTCAACAAAT 83
Query 425 AAGCATTTGCTAGATACAAAAGAGTCTTCAATTCTGGTTTACACAACAAGTCTACTACTA 484
|||| |||||||||| || ||| || ||||||||||||| ||| ||||||| ||||| |
Sbjct 82 AAGCTTTTGCTAGATGCAGAAGGGTATTCAATTCTGGTTCACATAACAAGTATACTAGT- 24
Query 485 CCATATCATCAGAGTCATATATCT 508
| || |||||| ||||||||||||
Sbjct 23 C-ATTTCATCATAGTCATATATCT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5