BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491960
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28150.1 | Symbols: | Protein of unknown function (DUF789) ... 1897 0.0
AT1G03610.1 | Symbols: | Protein of unknown function (DUF789) ... 187 2e-46
> AT4G28150.1 | Symbols: | Protein of unknown function (DUF789)
| chr4:13977303-13979006 REVERSE LENGTH=1291
Length=1291
Score = 1897 bits (1027), Expect = 0.0
Identities = 1166/1233 (95%), Gaps = 10/1233 (1%)
Strand=Plus/Plus
Query 1 CTCTTTGAAACGTCAGGGAAAGAGAATCCCGCAAAActctctcctctctcctctctGttt 60
|||||||||||||||||||||||||||||||||| ||||||||||||||| | | | |||
Sbjct 1 CTCTTTGAAACGTCAGGGAAAGAGAATCCCGCAATACTCTCTCCTCTCTCTTTTTTTTTT 60
Query 61 ttttCTGGGTCGAAGTTTGGTTCTTTGTTGGATAATGATGGTTTTTGACAATGAATCTAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTTTCTGGGTCGAAGTTTGGTTCTTTGTTGGATAATGATGGTTTTTGACAGTGAATCTAA 120
Query 121 CCTAGACCGATTCCTACGCTGCACTACACCAATTGTCCCTGCCTATTCCCTCCCAAAGAC 180
||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 121 CCTAGACCGATTCTTACGCTGCACTACACCGATTGTGCCTGCCTATTCCCTCCCAAAGAC 180
Query 181 ACAGATCAAGAACCTGAATCGTCTATGGTACCCTTTGGAGAGCCAGAGCGTAGAGTATTT 240
||||||||||||||| |||| ||||||||| || ||||||||||||||||| ||||||||
Sbjct 181 ACAGATCAAGAACCTTAATCCTCTATGGTATCCGTTGGAGAGCCAGAGCGTCGAGTATTT 240
Query 241 CAGGTTGGGAGATTTTTGGGATTGTTTCGACGAGTGGAGCGCTTACGGTGCAGGTGTCCC 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 CAGGTTGGGAGATTTTTGGGATTGTTTCGACGAGTGGAGTGCTTACGGTGCAGGTGTCCC 300
Query 301 CATTGTCTCGGAAACCGGCGAGACATTGGTCCAGTACTATGTTCCTTACCTCTCTGCCAT 360
|||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 301 CATTGTATCGGAAACGGGCGAAACATTGGTCCAATACTATGTTCCTTACCTCTCTGCAAT 360
Query 361 CCAGATTTTCACCTCTCATTCTGTTCTCAATGCTCTAAGGGAGGAGACGGAATCAGGGGA 420
||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||
Sbjct 361 CCAGATTTTCACCTCTCATTCTGTTATCAATACTCTTAGGGAGGAGACAGAATCAGGGGA 420
Query 421 TTCAGGGAGTGAGTCATGTAGCGAGGAGTGGAGATGGGAAGGATGTTCTTCGTCTGAGGA 480
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 TTCAGGGAGCGAGTCGTGTAGCGAGGAGTGGAGATGGGAAGGATGTTCTTCGTCTGAAGA 480
Query 481 AGGATTTGATCATCAAGAACCTCTCGATCGCCTCGGTTACTCTTACTTGCAGTATTTCGA 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGGTTTGATCATCAAGAACCTCTCGATCGCCTCGGTTACTCTTACTTGCAGTATTTCGA 540
Query 541 GAGATGTACACCTTACTCTAGAGTCCCTCTCATGGATAAGATCAAAGAGTTGGGAGAAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGATGTACACCTTACTCTAGAGTCCCTCTCATGGATAAGATCAAAGAGTTGGGAGAAAG 600
Query 601 ACACGCAGGCTTGAGGTCATTGAGAAGTGTTGATCTGTCTCCTGCGAGTTGGATGGCTGT 660
| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 ATACGTAGGGTTGAGGTCATTGAGGAGTGTTGATCTGTCTCCTGCGAGTTGGATGGCTGT 660
Query 661 TGCTTGGTATCCAATCTATCACATTCCCATGAATAGAAGCATAAAAGACTTGTCTACTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGCTTGGTATCCAATCTATCACATTCCCATGAATAGAAGCATAAAAGACTTGTCTACTTG 720
Query 721 CTTCCTCACTTACCACACGCTTTCTTCATCTTTCCAAGATTTGAAGAAAGAG--GAGGAG 778
|||||||||||||||||||||||||||||||||||||||| | || |||| | ||||||
Sbjct 721 CTTCCTCACTTACCACACGCTTTCTTCATCTTTCCAAGATGT-AA-AAAGGGAAGAGGAG 778
Query 779 AGGGAGAGGATAAGTGTGAGTGCATTTGGGATGGCCACTTACAAGATGCAAGGGAAGCTA 838
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 779 AAGGAGAGGATAAGTGTGAGTGCATTTGGGATGGCCACTTACAAGATGCAAGGGAGGCTA 838
Query 839 TGGGACAGTGATAGATTGCTTTGCTTTTTGAGCGTAGCAGATTCTTGGCTAAAGCAGCTA 898
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGGGATAATGATAGATTGCTTTGCTTTTTGAGCGTAGCAGATTCTTGGCTAAAGCAGCTA 898
Query 899 AGGGTCCACCACCATGACTTCACTTACTTCACCACTACTCCTCATTATCTTTGATACATA 958
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 899 AGGGTCCACCACCATGACTTCACCTACTTCACCACTACTACTCATTATCTTTGATATATG 958
Query 959 TAGTGTTTTAGATCATTACTTGGTTAACAATCTATTTAGTTTTGTTGTTTAAGAGTAGCA 1018
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 959 TAGTGTTTTAGATCATTACTTGGTTAACAGTCTATTTAGCTTTGTTGTTTAAGAGTAGCA 1018
Query 1019 CATATCATCAATAATGTTGGATTGTTGTTATTTGGGACTCTTAGGAAAGGATAGACACTG 1078
||||||| | ||||||||||||||||||| ||||||||||| || |||||||| ||||
Sbjct 1019 CATATCA--A-TAATGTTGGATTGTTGTTACTTGGGACTCTTTGGGAAGGATAGGTACTG 1075
Query 1079 ACTTTTTCTTCAAAATAttttttttATCATAAATTTGGTTTGGGGTCAGATTGATGATGA 1138
|||||||||||| || | |||| | ||||||||||| |||||||||||||||||||||||
Sbjct 1076 ACTTTTTCTTCACAAGACTTTTAT-ATCATAAATTTAGTTTGGGGTCAGATTGATGATGA 1134
Query 1139 TGGGCTCTCAATACATTTATTCTCTTCTAATGTTTTGTGGCTTTCTGTTTGTACAAACGC 1198
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1135 TGGGCTC--AATACATTTATTCTTTTCTAATGTTTTGTGGCTTTCTGTTTGTACAAACGC 1192
Query 1199 ACGTTCTCTTGATTTTGGTACCCTTCttttttt 1231
|||||||||||||||||||| |||||| |||||
Sbjct 1193 ACGTTCTCTTGATTTTGGTATCCTTCTCTTTTT 1225
> AT1G03610.1 | Symbols: | Protein of unknown function (DUF789)
| chr1:900887-903003 FORWARD LENGTH=1675
Length=1675
Score = 187 bits (101), Expect = 2e-46
Identities = 498/681 (73%), Gaps = 62/681 (9%)
Strand=Plus/Plus
Query 114 AATCTAACCTAGACCGATTCCTACGCTGCACT-ACACCAATT-GTCCCTGCCTATTCCCT 171
|||| || || || |||||||| | |||| | ||||| || || || || | || ||
Sbjct 446 AATCGAATCTTGATCGATTCCTTCATTGCA-TAACACC-CTTAGTGCCACCCCAATCTCT 503
Query 172 CCCAAAGACACAGATCAAGAA-CCTGAATCG-TCTATGGTACCCTTTGGAGAG-CCAGAG 228
||| ||||| |||| |||| ||| ||||| | | ||| | || | |||||| | | ||
Sbjct 504 CCCCAAGACGGAGAT-TAGAACCCTAAATCGAT-TGTGGCATCCATGGGAGAGACAAAAG 561
Query 229 CGTAGAGTATTTCAGGTTGGGAGATTTTTGGGATTGTT-TCGACGAGTGGAGCGCTTACG 287
|| |||| |||||||||| | ||||| |||||||||| | || || ||||||||||| |
Sbjct 562 -GTTGAGTTTTTCAGGTTGAGTGATTTGTGGGATTGTTAT-GATGAATGGAGCGCTTATG 619
Query 288 GTGC-AGGTGTCCCCATT-GTCTCGGAAACCGGCGAGA-CAT-TGGTCCAGTACTATGTT 343
| || | | || || ||| | | || ||| || | | | | || || |||||||||
Sbjct 620 GAGCTA-GCGTTCCTATTCATGTTACCAA-CGGAGA-ATC-TCTTGTTCAATACTATGTT 675
Query 344 CCTTACCTCTCTGCCATCCAGATTTTCACCTCTCATTCTGTTCTCAATGCTCT-AAGGGA 402
||||| |||||||||||||||||||||||||||||||| | || || | || ||||||
Sbjct 676 CCTTATCTCTCTGCCATCCAGATTTTCACCTCTCATTCC-TCCTTGATCCGCTTAAGGGA 734
Query 403 GGAGACGGAATCA-GGGGA-T-TCAGGG-AGTGAGTCA-TGTAGCGAGG-AG-TGGAGAT 455
||| | ||| | ||||| | | |||| || || || | |||||| || | | |||
Sbjct 735 AGAGTCTGAAG-ATGGGGAATGTGAGGGTAGAGA-TCCGTTTAGCGATTCAGGTAGCGAT 792
Query 456 GGGAAGGATGTTCTTCGTCTGAGGAAGGATTTGATCATCAAGAA-C-CT--C-TC---G- 506
| || | ||| || | | ||||||||| |||| | ||| | | || | || |
Sbjct 793 GAGA-G--TGT-CT-C-T--GAGGAAGGACTTGAGAA-CAACACGCTCTTGCATCCAAGT 843
Query 507 -ATCGCCTCGGTTACTCTT-A-CTTGCAGTA-TTTCGAGAGATGTA-CACCTTACT-CTA 560
|||| | ||||| |||| | || || || ||| ||||||| | | ||||| | | |
Sbjct 844 GATCGTTTGGGTTA-TCTTTATCTC-CAATACTTT-GAGAGATC-AGCTCCTTA-TACCA 898
Query 561 GAGTCCCTCTCATGGATAAGATCAAAGAGTTGGGAGAAAGACACGCAGGCTTGAGGTCAT 620
|||| ||||| |||||||||||||| || |||| ||||| || | || |||| ||| |
Sbjct 899 GAGTTCCTCTGATGGATAAGATCAATGAATTGGCTCAAAGATACCCGGGATTGATGTCGT 958
Query 621 TGAGAAGTGTTGATCTGTCTCCTGCGAGTTGGATGGCTGTTGCTTGGTATCCAATCTATC 680
||||||| |||||||| ||||| || ||||||||| | || || ||||| || || || |
Sbjct 959 TGAGAAGCGTTGATCTTTCTCCAGCTAGTTGGATGTCAGTAGCATGGTACCCGATTTACC 1018
Query 681 ACATTCCCATGA-ATAGAAGCATAAAAGACTTGTCTACTTGCTTCCTCACTTACCACACG 739
| || || ||| | |||| ||| |||||||| || || || ||||||||||| |||||
Sbjct 1019 ATATACCAATGGGA-AGAACCATTAAAGACTTATCCACGTGTTTCCTCACTTATCACACT 1077
Query 740 CTTTCTTCATCTTTCCAAGAT 760
||||| || ||||| ||||||
Sbjct 1078 CTTTCCTCTTCTTTTCAAGAT 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60491656725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5