BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491962
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28140.1 | Symbols: | Integrase-type DNA-binding superfamil... 1493 0.0
> AT4G28140.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr4:13974691-13975908 REVERSE LENGTH=1218
Length=1218
Score = 1493 bits (808), Expect = 0.0
Identities = 972/1047 (93%), Gaps = 27/1047 (3%)
Strand=Plus/Plus
Query 105 AAGATGGACTTTGACGAGGAGCTAAATCTTTGTATTACGAAAGGTAAAAATGTGGATCAT 164
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 123 AAGATGGACTTTGACGAGGAGCTAAATCTTTGTATTACGAAAGGTAAAAATGTTGATCAT 182
Query 165 TCTTTT---GGAGAAGCTTCTTCCACGTCCCCAAGGTCTATGAAGAAGATGAAGAGTCCT 221
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 183 TCTTTTGGAGGAGAAGCTTCTTCCACGTCCCCAAGATCTATGAAGAAAATGAAGAGTCCT 242
Query 222 AATCGTCCTAAACCCTATTTCCAATCCTCTTCTTCTCCTTATTCGTTAGGGGCTTTCCCT 281
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 243 AGTCGTCCTAAACCCTATTTCCAATCCTCTTCTTCTCCTTATTCGTTAGAGGCTTTCCCT 302
Query 282 TTTTCTCTCGATCCAACAATTCAGAATCAGCAACAACAACTCGGATCATACGTTCCGG-- 339
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 303 TTTTCTCTCGATCCAACACTTCAGAATCAGCAACAACAACTCGGATCATACGTTCCGGTA 362
Query 340 -TTGAGCAACAACATGACCCGACAATGCAAGGCCAGAAGCAAATGATCTCGTTTAGTCCT 398
||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 363 CTTGAGCAACGACAAGACCCGACAATGCAAGGCCAGAAGCAAATGATCTCCTTTAGTCCT 422
Query 399 ---CAACAAC-A-A-CAGCAGCAGTATATGGCCAAGTACTGGAGTGACACATTGAATTTG 452
||||||| | | |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 423 CAACAACAACAACAGCAGCAGCAGTATATGGCCCAGTACTGGAGTGACACATTGAATCTG 482
Query 453 AGTCCAAGAGGAAGAATGATGAT--T-ATGAGCCAAGAAACTGTTCAACCCTATAGCGCA 509
||||||||||||||||||||||| | |||||||||||| |||||||||| || | ||||
Sbjct 483 AGTCCAAGAGGAAGAATGATGATGATGATGAGCCAAGAAGCTGTTCAACCTTACATCGCA 542
Query 510 ACCAAGCTGTACAGAGGAGTAAGACAACGTCAATGGGGAAAATGGGTCGCAGAGATCCGT 569
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 543 ACGAAGCTGTACAGAGGAGTGAGACAACGTCAATGGGGAAAATGGGTCGCAGAGATCCGT 602
Query 570 AAGCCACGAAGCAGGGCACGGCTTTGGCTTGGTACCTTTGATACAGCTGAAGAAGCTGCC 629
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 603 AAGCCACGAAGCAGGGCACGTCTTTGGCTTGGTACCTTTGATACAGCTGAAGAAGCTGCC 662
Query 630 ATGGCCTACGACCGCCAAGCCTTCAAATTGAGG-GGCCACAGCGCAACACTGAACTTCCC 688
||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||
Sbjct 663 ATGGCCTACGACCGCCAAGCCTTCAAATT-ACGAGGCCACAGCGCAACACTGAATTTCCC 721
Query 689 GGAGCATTTTGTGAATAAGGAAAGCGAGCTGCATGATTCAAACTCGTCAGATCAGAAGGA 748
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 722 GGAGCATTTTGTGAATAAGGAAAGCGAGCTGCATGATTCAAACTCGTCGGATCAGAAAGA 781
Query 749 ACCTGAAACGCCACAGCCAAGCGAGGTTAACTTGGAAAGCAAGGAACTAGCGGTCATTGA 808
|||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||
Sbjct 782 ACCTGAAACGCCACAGCCAAGCGAGGTTAACTTGGAGAGCAAGGAACTACCGGTGATTGA 841
Query 809 TGTTGGGAGAGACGAAGGCATGGCTGAGGCGTGGTACAATGCGGTGACATCGGGTTGGGG 868
|||||||||||| ||||| ||||||||||| ||||||||||| | |||||||| |||||
Sbjct 842 TGTTGGGAGAGAGGAAGGTATGGCTGAGGCATGGTACAATGCCATTACATCGGGATGGGG 901
Query 869 TCCTGAAAGTCCCCTTTGGGATGATTTGGATAGTTCTCATCAGTTTTCA---GAAAGCTC 925
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 902 TCCTGAAAGTCCTCTTTGGGATGATTTGGATAGTTCTCATCAGTTTTCATCAGAAAGCTC 961
Query 926 AtcttcttcttctctctcttGTCCCATGAGACCTTTCTTTTGAAAAAGGTTATAAGCCCA 985
|||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||| ||||
Sbjct 962 ATCTTCTTCTCCTCTCTCTTGTCCTATGAGGCCTTTCTTTTGAAAAAGTTTATAAACCCA 1021
Query 986 CATTGT-T-GTAGGTTGTAGTTTAGGGTTCTACTCATTGGCATTTGGATGGAGACAGTTT 1043
|||||| | ||||||| |||||||||||| | ||||||||||||||||||||| || |||
Sbjct 1022 CATTGTGTTGTAGGTTATAGTTTAGGGTTATGCTCATTGGCATTTGGATGGAGGCAATTT 1081
Query 1044 TTGTGATCTCCCACTTC-AC-ACAT--CAGTCATTATATGTGTCTACCTTCTCTCTGTAT 1099
||||||||||||| ||| || |||| ||||||||||||||||||||||| |||||||||
Sbjct 1082 TTGTGATCTCCCA-TTCCACCACATATCAGTCATTATATGTGTCTACCTTTTCTCTGTAT 1140
Query 1100 TTCTATCGTCATCATTGATTTTAATAT 1126
||||||| | ||||||| ||||| |||
Sbjct 1141 TTCTATCATTATCATTGTTTTTATTAT 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56726615850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5