BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491969

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G28085.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   399    7e-111


> AT4G28085.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13960032-13960483 
FORWARD LENGTH=452
Length=452

 Score =  399 bits (216),  Expect = 7e-111
 Identities = 262/283 (93%), Gaps = 8/283 (3%)
 Strand=Plus/Plus

Query  35   AAGCAAAACGCAAAAACCAAAGATGGGTGAGATGATCAAAGCCAGACGCATACTCCTCTT  94
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AAGCAAAACGCAAAAACCAAAGATGGGTGAGATGATCAAAGCCAGACGCATACTCCTCTT  60

Query  95   CTCCATCGTATTCCTCTTCTTCTTCTCTCAGGCCCTTCTTTTGTGTTCAGCT-A--ATGA  151
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |   |||
Sbjct  61   CTCCATCGTATTCCTCTTCTTCTTCTCTCAGGCCTTTCTTTTGTGTTCAGCTGAGGGTGA  120

Query  152  GCATGGCTCAAGAAATCTCGCAGTGGTGATGAAGAAAAGGGTGAAATACAGAGGACCTCG  211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCATGGCTCAAGAAATCTCGCAGTGGTGATGAAGAAAAGGGTGAAATACAGAGGACCTCG  180

Query  212  CAACACAACAACCTCC---GCAGCTTCCGCTATGATGTTCCCAAGTTCCTTCTC-TATTG  267
            |||||||||||| |||   ||||| ||  |||| ||||||||| | |||||| | |||||
Sbjct  181  CAACACAACAACATCCTCTGCAGCCTCAACTATTATGTTCCCAGGCTCCTTC-CATATTG  239

Query  268  GTGCTGCTTCTTCTTTCCTCCTCGCTCTTCTTTTGTAAGCTCC  310
            |||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct  240  GTGCTGCTTCCTCTTTACTCCTTGCTCTTCTTTTATAAGCTCC  282


 Score =  113 bits (61),  Expect = 1e-24
 Identities = 86/97 (89%), Gaps = 6/97 (6%)
 Strand=Plus/Plus

Query  311  ATGATTCATGTAATTTGCTTTTCTCAATTGAATTGATCTTGTaaaaaaaTTCTCAAATGG  370
            |||||||||||||||||||||||||    | |||||| |||| | ||| |||||||||||
Sbjct  314  ATGATTCATGTAATTTGCTTTTCTC----G-ATTGATTTTGT-AGAAATTTCTCAAATGG  367

Query  371  TCTTAAACTCTGTTTGTAAATTATTTGCTCTGTTTCA  407
            ||| ||| |||||||||||||||||||||||||||||
Sbjct  368  TCTAAAATTCTGTTTGTAAATTATTTGCTCTGTTTCA  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19252547867


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5