BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491970
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28070.2 | Symbols: | AFG1-like ATPase family protein | chr... 2553 0.0
> AT4G28070.2 | Symbols: | AFG1-like ATPase family protein | chr4:13946009-13948627
FORWARD LENGTH=1587
Length=1587
Score = 2553 bits (1382), Expect = 0.0
Identities = 1504/1564 (96%), Gaps = 3/1564 (0%)
Strand=Plus/Plus
Query 1 ATGCGCTTGCTTCTTCTCTCCCTTCGCCGTGTAAATCTATTCTCGAGGCATCAACGATAC 60
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGCGATTGCTTCTTCTCTCCCTTCGCCGTGTAACTCTATTCTCGAGGCATCAACGATAC 60
Query 61 GCTTTCGCTTCTATTCACAATTGTTTGATCTCAATCAATCCCAGCTCGCCTTCTTCATCC 120
||||||||| | ||||| |||||||||||||| |||||||||||| | |||||||||
Sbjct 61 GCTTTCGCTCCCATTCATAATTGTTTGATCTCTATCAATCCCAGCACATCTTCTTCAT-- 118
Query 121 CTTGTTTTCTCGGTTTCTTCCTTCTGTTCGTCTCCGCATTCCAATGGAGATGGAAAGATT 180
| | | ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 119 C-TCTATTCTCGGCTTCTTCCTTCTGTTCGTCTCCACATTCCAATGGAGATGGAAAGATT 177
Query 181 GCAGGGCCGTTAGTGGAGTATGAACGCAGAATCGTAGCTGGAGAGTTATTGGATGGAGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCAGGGCCGTTAGTGGAGTATGAACGCAGAATCGTAGCTGGAGAGTTATTGGATGGAGAT 237
Query 241 TTATATCAGCTAGGTACTTTAAGAGAACTTCAGAGACTCTACGACGAGCTTGTTCAATCT 300
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTATGTCAGCTAGGTACACTAAGAGAACTTCAGAGACTCTACGACGAGCTTGTTCAATCT 297
Query 301 GCTGATGCTTGTCGATTGGATCGTTATTCTGCATCTGCAAAATCCACTAGGACTAATTGG 360
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 298 GCTGATGCTTGTCGATTGGATCGTTATTCTGCATCTGCAAAGTCCACTAGGAGTAATTGG 357
Query 361 TTCTGGAACAAATTTGTGCCTCACTCTTCTGTCTCTCCTGTCAAAGGCCTATACTTATAT 420
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 358 TTCTGGAACAAATTTGTGTCTCACTCTTCTGTCTCTCCTGTCAAAGGCTTATACTTATAT 417
Query 421 GGAGGAGTAGGAACTGGAAAGACAATGCTCATGGACTTGTTTTTTCATCAATTGCCAGGT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 GGAGGAGTAGGAACTGGAAAGACAATGCTCATGGACTTGTTTTTTCATCAATTGCCAGCT 477
Query 481 AGCTGGAGAACACAAAGGATTCACTTTCACAATTTCATGTTGAGTGTTCATAGCCGCCTG 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 AGCTGGAGAACACAAAGGATTCACTTTCACAATTTCATGTTGAGTGTGCATAGCCGCCTG 537
Query 541 CAAAAGCACAAGGGTCTTGAAGATCCACTTGAAGTTGTTGGCCTGGAAATAGCCGACGAG 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 538 CAAAAGCACAAGGGTCTTGAAGATCCACTTGAAGTCGTTGGCCTGGAAATAGCTGACGAG 597
Query 601 GCTATATTACTATGCTTAGATGAGTTCATGGTCAATGATGTAGCTGATGCACTGATACTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCTATATTACTATGCTTAGATGAGTTCATGGTCAATGATGTAGCTGATGCACTGATACTA 657
Query 661 AACCGTCTTTTTAGACACTTGTTTAACAATGGCATTATTCTTGTTGCTACATCAAACCGT 720
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AACCGTCTCTTTAGACACTTGTTTAACAATGGCATTATTCTTGTTGCTACATCAAACCGT 717
Query 721 GCTCCAGATAATCTCTATGAAGGTGGTTTACAGAGGGACTTATTCCTTCCGTTTATTTCC 780
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 718 GCTCCAGATAATCTCTATGAAGGTGGTTTACAGAGGGACCTATTCCTTCCGTTTATTTCC 777
Query 781 ACGCTAAAGGAAAGATGTGTGGTTCGTGAGATTGGCTCATCGGTGGACTATCGGAAATTG 840
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 778 ACACTAAAGGAAAGATGTGTCGTTCGTGAGATTGGCTCATCGGTGGACTATCGGAAACTG 837
Query 841 ACCTCTGCTGAAGAGGGATTTTACTTCATTGGGAAGGATATCTCTGGCCTTCTTAAACAG 900
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 838 ACCTCTGCTGAAGAGGGATTTTACTTCATTGGAAAGGATATCTCAGGCCTTCTAAAACAG 897
Query 901 AAGTTTCAGCTGTTGGTTGGCGATCAACCAGCCGGTCCTCAAGTGGTTGAAGTAGTAATG 960
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 898 AAGTTTCAGCTGTTGGTTGGCGATCAACCGGCTGGTCCTCAAGTGGTTGAAGTAGTAATG 957
Query 961 GGAAGGAAATTGCAGGTTCCTCTGGCTGCGGATGGATGTGCCTACTTTCTTTTTGAAGAG 1020
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 958 GGAAGGAAATTGCAGGTTCCTCTAGCTGCTGATGGATGTGCCTACTTTCTTTTTGAAGAG 1017
Query 1021 CTGTGTGATAGACCCCTAGGCGCAGCCGATTATCTCGGATTATTCAAGAAATTTCATACT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTGTGTGATAGACCCCTAGGCGCAGCCGATTATCTCGGATTATTCAAGAAATTTCATACT 1077
Query 1081 TTGGCTCTGGAAGGTGTACCCATCTTCGGGCTTCACAATAGAACCGCAGCTTACCGTTTT 1140
||||||||||||||||||||| |||||||||| || ||||| || ||||||||||| |||
Sbjct 1078 TTGGCTCTGGAAGGTGTACCCTTCTTCGGGCTCCATAATAGGACTGCAGCTTACCGCTTT 1137
Query 1141 GTGACCCTGGTTGATGTAATGTATGAGACCAAGGCCAGGCTTCTATGCACGGCAGAAGGT 1200
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1138 GTGACACTGGTTGATGTAATGTATGAGAACAAGGCCAGGCTTCTATGCACGGCAGAAGGT 1197
Query 1201 AGCCCTCTAGAACTGCTGGAGAGAATAGTGACAATCTCTGATGCGCAGCAAATAGCACCT 1260
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1198 AGCCCTCTAGAACTGCTGGAGAGAATAGTGACAATCTCTGATGCACAGCAAATAGCACCT 1257
Query 1261 AGAACATCTTCAAGATCAAGGAAGAGTGATGATCCCGACCTTTGTGTGGACAACGAGCTT 1320
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1258 AGAACCTCTTCAAGATCAAGGAAGAGTGATGATCCCGACCTTTGCGTGGACAACGAGCTT 1317
Query 1321 GGTTTTGCTAAAGACCGCACCATTAGCAGATTAACGGAGATGAACAGCAAAGAATACTTG 1380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GGTTTTGCTAAAGACCGCACCATTAGCAGATTAACGGAGATGAACAGCAAAGAATACTTA 1377
Query 1381 GAACAACATTCCAGAATGTTGCAGGAGAAGCAGCCTTCTTCTTAGTATTATTACAATGTG 1440
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1378 GAACAACATTCCAGAATGTTGCAGGAGAAGCAGCCTTCTTCTTAGTATTACTACAATGTG 1437
Query 1441 ATTAGAGATGCTGTTAAACCTGTTGGAACCATTGTTACAGAACAAAAGGTCTCATAATGT 1500
|||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 1438 ATTAGAGATGCTGTCAAACCTGTTGGAACCATTGTTACTGAACACAAGGCCTCATAATGT 1497
Query 1501 ATTTATTCTGTGTGTTTGAGCACAGACCCATATTTTTCTTGCAAGTTGATCATGTTTTCA 1560
||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1498 ATTTACTCTCTGTGTTTGAGCACAGACCCATAGTTTTCTTGCAAGTTGATCATGTTCTCA 1557
Query 1561 TCAG 1564
||||
Sbjct 1558 TCAG 1561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208438210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5