BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491976
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28040.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 2163 0.0
AT4G28050.1 | Symbols: TET7 | tetraspanin7 | chr4:13942257-1394... 219 9e-56
> AT4G28040.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr4:13940359-13942309 FORWARD LENGTH=1454
Length=1454
Score = 2163 bits (1171), Expect = 0.0
Identities = 1380/1477 (93%), Gaps = 29/1477 (2%)
Strand=Plus/Plus
Query 14 CCAACTTTGGCTTTCCAAGAACATGGTTGCATCGAGC--AGCTTTGCTAGAGATAAAGTA 71
||||||| ||||||||||||||||||||||||||||| | ||||||| |||| ||
Sbjct 3 CCAACTTCGGCTTTCCAAGAACATGGTTGCATCGAGCATATCTTTGCT--AGAT--TTTA 58
Query 72 TACTATAACTACTACGTACTTCTCCCTTACTTTGTGATGCGGAAACTCAAAACCGTAATC 131
| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 59 -AATATAACTAC-A---ACTTCTTGCTTACTTTGTGATGCGGAAACTCAAAACCGTAATC 113
Query 132 ACTCGTGTTATAtttttttGTTGTTTCTTTCAACGCGAATATCTGAAACCAGTTTAGTTT 191
|||| ||||||| |||||||||||| |||||||||| ||||||||||||| |||||
Sbjct 114 ACTCATGTTATA-TTTTTTGTTGTTGCTTTCAACGCTAATATCTGAAACC-----AGTTT 167
Query 192 TCGCTGGTCTACAGATCCATTTGCAAGAAATGTCAACAAAATAAGAAGCTCTTATCATTC 251
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 168 TCGCTGGTCTA-AGATCCATTTGCAAGAAATGTCAACAAAATAAAAAGCTCTTATCATTC 226
Query 252 CCACGAGTTTTAGTTAAGGTATTCAACagagagagagagagagagagCGATGGAGATATC 311
||||||||||||||||| | | | | | ||||||||||||||| ||||||||||||
Sbjct 227 CCACGAGTTTTAGTTAA-G-A-T---CTTA-AGAGAGAGAGAGAGA--GATGGAGATATC 277
Query 312 TAAATACAAGGCGGTGCTAGCGTTAGTGATGCTGCAGTTTACGTCGGCCGGAGTTGCACT 371
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 278 GAAATACAAGGCGGTGCTAGCGTTAGTGATGTTGCAGTTTACGTCCGCCGGAGTTGCACT 337
Query 372 CTTCACGAAAGCTGCTTTCATGGAAGGACTCAATCCCACCGTCTTCGTTGTTTACCGTCA 431
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 338 CTTCACGAAAGCTGCTTTCATGGAAGGTCTCAATCCCACCGTCTTCGTTGTTTACCGTCA 397
Query 432 AGCCATCGCCACTCTCTTCATCTGCCCCATCTCTTTCATTTCCGCTCGGAGGAAAGAAAA 491
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 398 AGCCATCGCCACTCTCTTCATCTGCCCCATCTCTTTCATTTCCGCTTGGAGGAAAGAAAA 457
Query 492 CAAACCATCTCTGGGAGTAAGAGGCTTTTGGTGGGTGGCTTTGACGGCTGTTATTGGTGT 551
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CAAACCTTCTCTGGGAGTAAGAGGCTTTTGGTGGGTGGCTTTGACGGCTGTTATTGGTGT 517
Query 552 GACTGTGAATCAGAACGCTTATTTCAAAGGGATTGACTTGTCTTCTTCATCCATGGCTTG 611
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GACTGTTAATCAGAACGCTTATTTCAAAGGGATTGACTTGTCTTCTTCATCCATGGCTTG 577
Query 612 TGCCATGACTAATCTTATTCCTGCCGTCACCTTTATTATCTCCATCATTGTTGGGTTCGA 671
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 578 TGCCATGACTAATCTTATTCCTGCCGTCACCTTCATTATCTCCATCATTGTTGGGTTCGA 637
Query 672 GAGTATAAAGAGGAGAAGTATGAAAAGTGTTGCAAAGGTAATAGGAACAGGTGTCTGTGT 731
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 638 GAGTATAAAGAGGAGAAGTATGAAAAGTGTTGCAAAAGTAATAGGAACTGGTGTCTGTGT 697
Query 732 GGGAGGAGCCATGGCTATGACTTTTCTCAGAGGTCCAAAATTGCTCCATGCGTTGCTCAA 791
||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 698 GGGAGGAGCCATGGCAATGACTTTTCTCAGAGGTCCAAAATTGCTCAATGCCTTGCTCAA 757
Query 792 CCAAGACAACACAGCTTGGTTACTCGGCTGTTTCTTTCTTCTCATTAGCACATTCGCTTG 851
|||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct 758 CCAAGACAACACAGCTTGGTTACTCGGCTGCTTCTTCCTTCTTATTAGCACATTTGCTTG 817
Query 852 GTCCCTTTGGTTGATCCTTCAGGTTCCTATTGCATCTCACTGTCCTGATCACTTGTACAC 911
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 818 GTCTCTTTGGTTGATCCTTCAGGTTCCTATTGCCTCTCACTGTCCTGACCACTTGTACAC 877
Query 912 TTCTGCCTGCACATGTTTCATGGCTACCATAGCCTCTTTCTTCATGGCTCTCGCCTTAGG 971
||||||||||||||||||||| ||||||||||| |||||| || ||||||||||||||||
Sbjct 878 TTCTGCCTGCACATGTTTCATCGCTACCATAGCTTCTTTCCTCGTGGCTCTCGCCTTAGG 937
Query 972 AAACACTCATTTACCGTCATGGAAACTTGATTCCTCCTTGAAGCTCTCCTGTTGCATATA 1031
||||||||||||||| | ||||| |||||||||| |||||||||||| || ||||||||
Sbjct 938 CAACACTCATTTACCGCCCTGGAAGCTTGATTCCTTCTTGAAGCTCTCTTGCTGCATATA 997
Query 1032 CTCTGGATTTCAATTGGCGATATCTTTCTTTCTACAAGCTTGGGTCGTGTCACAGAAAGG 1091
||||||||| || |||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 998 CTCTGGATTCCAGTTGGCGATATCTTTCTTTCTACAAGCTTGGATCGTATCACAGAAAGG 1057
Query 1092 ACCTCTTTTCTCTGCCCTATTTAATCCTCTTTCTGCAGTCATCGTCACTTTCTTCGGCGC 1151
|||| ||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1058 ACCTGTTTTCTCTGCCCTCTTCAACCCTCTTTCTGCAGTCATCGTCACTTTCTTCGGCGC 1117
Query 1152 TCTGTATCTAAAAGAACAGACTTACCTCGGGAGCTTGCTAGGCGCTTTGGCTATCATCCT 1211
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1118 TCTGTATCTAAAAGAACAGACTTACCTCGGGAGCTTGTTAGGCGCTTTGGCTATCATCCT 1177
Query 1212 TGGTCTCTATATTGTTCTCTGGGGCAAATCCGAAGACTATCAAGAAGAATCAACAGACCT 1271
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1178 TGGTCTCTACATTGTTCTCTGGGGCAAATCTGAAGACTATCAAGAAGAATCAACAGACCT 1237
Query 1272 GAAATTGGAAAATGAATACACCACTTCCTCCCAATCCGACATTGTTTCCATTATGATTGG 1331
|||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1238 GAAATTGGAAAATGAACACAACACTTCCTCTCAATCTGACATTGTTTCCATTATGATTGG 1297
Query 1332 TGATAAGGCCTTTCGTAGTTCGGAGCTATTAGAACCGCTTCTCATGTGAGTTATATTGAA 1391
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1298 TGATAAGGCCTTTCGTAGTTCGGAGCTATTAGAACCTCTTCTCATGTGAGTTTTATTGAA 1357
Query 1392 GTTAGTTCTAAATGGTGTAAG-GGAAATTTTTTGACAATGGACAATTTAAGAATATGAAA 1450
|| ||||||| |||||||||| |||||||||| ||||||||||| || ||||||||||||
Sbjct 1358 GTCAGTTCTACATGGTGTAAGTGGAAATTTTT-GACAATGGACACTTAAAGAATATGAAA 1416
Query 1451 ATGATAGTAATGCAAATTGAAATGGAACTTCTTTTAC 1487
|||||| ||| ||||| ||||||||||||||||||||
Sbjct 1417 ATGATAATAACGCAAAGTGAAATGGAACTTCTTTTAC 1453
> AT4G28050.1 | Symbols: TET7 | tetraspanin7 | chr4:13942257-13943732
REVERSE LENGTH=1212
Length=1212
Score = 219 bits (118), Expect = 9e-56
Identities = 161/180 (89%), Gaps = 9/180 (5%)
Strand=Plus/Minus
Query 1439 AAGAATATGAAAATGATAGTAATGCAAATTGAAATGGAACTTCTTTTACGAATCTCAGTC 1498
|||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||| ||
Sbjct 1209 AAGAATATGAAAATGATAATAACGCAAAGTGAAATGGAACTTCTTTTACAAATCTCACTC 1150
Query 1499 ATCTCAATAGATGTATAAGCCACTC--CACACACAAGAGTCGAAATAGAAGCACAAGCAA 1556
|||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||
Sbjct 1149 GTCTCAACAGATGTATAAGCTACTCAACACACAAAAGAGTCGAAATAGAAGCACAAGCAA 1090
Query 1557 GTGCTTTTGTAACTCATTTAGTCATATGTTGCAAATTTAAGAGAGAAATTACATTGAAAT 1616
|||||||||||||||||| | | ||||||||||||||||||||| |||||||||||
Sbjct 1089 GTGCTTTTGTAACTCATT-A-T-----GTTGCAAATTTAAGAGAGAAAATACATTGAAAT 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79818866550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5