BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491980
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28025.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 743 0.0
> AT4G28025.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:13935604-13937508 REVERSE LENGTH=847
Length=847
Score = 743 bits (402), Expect = 0.0
Identities = 508/557 (91%), Gaps = 15/557 (3%)
Strand=Plus/Plus
Query 1 ATATAAAACAGAGACGAAGAACGAACGCTT-CGAAAATATGAAAGGCTTAGAAATGGTGG 59
|||||||||||||||| | || |||| || |||||||| ||||||||||||||||||||
Sbjct 94 ATATAAAACAGAGACG-A-AA--AACG-TTGCGAAAATACGAAAGGCTTAGAAATGGTGG 148
Query 60 TGACGTCTTTCTCTTCACCGCCGTCTATCTTCTTCTT-CCATGGAGCTGATCCTCAGCTT 118
||||||||||||||||| ||||| ||||||||||||| || |||||||||| ||||| ||
Sbjct 149 TGACGTCTTTCTCTTCAGCGCCGCCTATCTTCTTCTTACC-TGGAGCTGATGCTCAGTTT 207
Query 119 ACTTCAACCAATGGACGCTTTGCGACTCCTTCCTCTCCTCTCGTAAAGGGACTAAGAAGA 178
|||| |||||||| | ||||| | |||||||||| |||||||||||||||||||||||
Sbjct 208 TCTTCTTCCAATGGAAGGTTTGCTATTCCTTCCTCTTCTCTCGTAAAGGGACTAAGAAGA 267
Query 179 CACCAAGATGCAAAGTTGGTGGGAAACAGAGCCAGAGTTGGAGTAGTTCGAGTCCTAGCA 238
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 268 CACCAAGATGCAAAGTTGGTGGGCAACAGAGCCAGAGTTGGAGTAGTACGAGTCCTAGCG 327
Query 239 AACCCAAATGTA--T-CTCCTCCTCCTCCAGGAAAAGCAAAGGTaaaaaaaGAGGTAATC 295
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 AACCCAAATGTATCTCCTCCTCCTCCTCCAGGAAAAGCAAAGGTAAAAAAAGAGGTAATC 387
Query 296 ATGGTAGACCCTCTTGAGGCCAAGCGGTTAGCTGGCAAGCAAATGGAAGAGATTAAAGGC 355
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 388 ATGGTAGACCCTCTTGAGGCTAAGCGGTTAGCTAGTAAGCAAATGGAAGAGATTAAAGGC 447
Query 356 AGAGAAAAGCAACAGAGAAGGCGTGAAATAGAGGCTATAAACGGAGCATGGGCAATCATA 415
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 448 AGAGAAAAGCAACAGAGAAGGCGTGAAATAGAGGCTATTAACGGAGCATGGGCAATCATA 507
Query 416 GGACTCACGATAGGGCTGGTGATCGAAGCCCAAACAGGGAAGGGTATCCTGGCTCAGTTG 475
||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 508 GGACTCATGATAGGGCTGGTGATCGAAGCTCAAACGGGGAAGGGTATTCTGGCTCAGTTG 567
Query 476 GCTGGTTATTGGTCTGCGGTTTTGCATCTATTTGTTCCATCAACATAGAATGAAAAACTT 535
||||||||||||||||| ||| | ||| | || ||||||||| ||||||||| ||
Sbjct 568 GCTGGTTATTGGTCTGCAGTTGTCCATTTGTTCACTCCATCAACTTAGAATGAA----TT 623
Query 536 GAGTTTCATTTGGTTTT 552
||||||||||||||||
Sbjct 624 AAGTTTCATTTGGTTTT 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30592595523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5