BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491981
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28020.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1766 0.0
> AT4G28020.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0066 (InterPro:IPR001378);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:13933232-13935315 REVERSE LENGTH=1279
Length=1279
Score = 1766 bits (956), Expect = 0.0
Identities = 1062/1113 (95%), Gaps = 8/1113 (1%)
Strand=Plus/Plus
Query 1 TCCCGCCGCCGTCGCAACGTTCCACTCGCCGGCACAGCAAACAGCTCGCTCATCCATGGC 60
||||||||||||||||||||||||||||||| | |||||||||| | ||||| |||||
Sbjct 16 TCCCGCCGCCGTCGCAACGTTCCACTCGCCGTCGCAGCAAACAG-T---TCATCTATGGC 71
Query 61 TA-TTGCAGGAAGCTCCAACGGCTATACCACAGCGGCTTTAGCCTTGACACTCGCCGTAG 119
|| | ||||| ||||| |||||| |||||| |||||||||||||| |||||||||||||
Sbjct 72 TACAT-CAGGACGCTCCCACGGCTCTACCACGGCGGCTTTAGCCTTTACACTCGCCGTAG 130
Query 120 TATCTGTATCCGCTGCCGTCTCGCTGTATAGATGGCGAAGACGAGGAGAAGATTTGGAGT 179
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 131 TATCTGTATCCGCTGCCTTCTCGCTGTATAGATGGCGAAGACGAGAAGAAGATTTGGAGA 190
Query 180 ATAGGATTAAGGAACTTGAGAAGTCTTTGGGATCTACCATGGAGAAAAGTGCTTCTGAGA 239
||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 191 ATAGGATCAAGGAATTTGAGAAGTCTTTGGGATCTACCTTGGAAAAAAGTGCTTCTGAGA 250
Query 240 GAAAAGGTCGAGTTAAAGCTCAGCAGGCTTTACGGGAGGCGTTAGCACAGACTGAGTCAC 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GAAAAGGTCGAGTCAAAGCTCAGCAGGCTTTACGGGAGGCGTTAGCACAGACTGAGTCAC 310
Query 300 ATGATTTACACAGCACAATATACCCGATGCGACCAATTGGCACTATACAGTCTTGCTTCT 359
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 311 ATGATTTACACAGCACAATATACCCGATGCGACCTATTGGCACTATCCAGTCTTGCTTCT 370
Query 360 CTACTAGGAACGGGACACCGAGGCAGCCATTGCTTGTTTCTCTTGCGAGGGCATGTTTGG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTACTAGGAACGGGACACCGAGGCAGCCATTGCTTGTTTCTCTTGCGAGGGCATGTTTGA 430
Query 420 TCTTTGATCCGGCTTTGGTTCCTCCTGCGTCTCTTGAGGGTCTCGAAGAGTATTCTCATT 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 431 TCTTTGATCCGGCTTTGGTTCCTCCTGCGTCTCTTGAGGGTCTTGAAGAGTATTCTCATT 490
Query 480 GCTGGATACTATACGTGTTTCATCTCAACACTGATATAGAGAAGCTATGGAGAAACCCAT 539
|||||||||| || |||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 491 GCTGGATACTCTATGTGTTTCATCTCAATACTGATATCGAGAAGCTATGGAGAAAACCAT 550
Query 540 CTCAGTCGAAGCTCAAGGCAAAGGTGAGAGTGCCAAGGCTAAATGGGGAAAGGAAGGGAG 599
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 551 CTCAGTCGAAGCTCAAGGCAAAGGTGAGAGTGCCACGGCTAAATGGGGAACGGAAGGGAG 610
Query 600 TCTTTGCTACTCGGTCCCCTCATCGACCTTGTCCCATTGGCCTCACTGTTGCTAAGGTGG 659
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 611 TCTTTGCTACGCGGTCCCCTCATCGACCTTGTCCCATTGGCCTCACCGTTGCTAAGGTGG 670
Query 660 AGGAAATCCAAAAGGATAAGGTTCTGCTCTCTGGTGTTGATCTGGTGGATGGGACTCCGG 719
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 671 AGGAAATCCAAAAGGATAAGGTTCTCCTCTCTGGTGTCGATCTGGTGGATGGGACTCCGG 730
Query 720 TGCTCGACATCAAACCTTATTTACCATACTCGGACAGTATTCAAGGAGCCTCAGTGCCAA 779
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TGCTCGACATCAAACCATATTTACCATACTCGGACAGTATTCAAGGAGCCTCAGTGCCAA 790
Query 780 ACTGGGTAAAGGAGGACTGCTTATTGGCTGTGGCTTCTGTGACATTCTCAGAGACCTTCT 839
||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 791 ACTGGGTAAAGGAGGACTGCTCATTGGCTGTGGCTTCTGTGACTTTCTCAGATACCTTCT 850
Query 840 CTTCCTCCATCACCAGCTGCTGGAAACTGATAGAAAAGAAGTCTCTATATAGTTCAGCAG 899
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 CTTCATCCATCACCAGCTGCTGGAAACTGATAGAAAAGAAGTCTCTATATAGTTCAGCAG 910
Query 900 AAGAGTTTAGGAGCTTGATCACGCAGGTCCTGTCATGGGACATACGATCAATGTCGCAAC 959
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 ATGAGTTTAGGAGCTTGATCACGCAGGTCCTGTCATGGGACATACGATCAATGTCGCAAC 970
Query 960 GGAACAAGCCACAAGATACATTGAATGCA-GAAATCGTTTATCACTTGGTTCTGGAGGGA 1018
||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||
Sbjct 971 GGAACAAGCCACAAGATACATTGGATG-AGGAAATTGTTTATCACTTGGTTCTGGAGGGA 1029
Query 1019 CTAGACGTGTCTTACATGATAGATAATGAAAGTAATATTCTCGTTCAGGATGTTTCTCTT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CTAGACGTGTCTTACATGATAGATAATGAAAGTAATATTCTCGTTCAGGATGTTTCTCTT 1089
Query 1079 CCCAAAAACTTGCAAGATTTTGCAGGACGCTGA 1111
||||||||| |||||||| |||||||| |||||
Sbjct 1090 CCCAAAAACCTGCAAGATGTTGCAGGAAGCTGA 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5