BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491983
Length=2181
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28000.1 | Symbols: | P-loop containing nucleoside triphosp... 1685 0.0
AT5G52882.1 | Symbols: | P-loop containing nucleoside triphosp... 1016 0.0
> AT4G28000.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:13925456-13929280
FORWARD LENGTH=2493
Length=2493
Score = 1685 bits (912), Expect = 0.0
Identities = 984/1020 (96%), Gaps = 0/1020 (0%)
Strand=Plus/Plus
Query 1162 GAGGTGGCTCCTGATAATGAATTCGAGAAGCGCATAAGACCAGAGGTTATCCCAGCAAAT 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 GAGGTGGCTCCTGATAATGAATTCGAGAAGCGCATAAGACCAGAGGTTATCCCAGCAAAT 1533
Query 1222 GAGATTGGTGTGACTTTTGCTGATATAGGTTCACTGGATGAAACCAAAGAATCGCTTCAA 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1534 GAGATTGGTGTGACTTTTGCTGATATAGGTTCACTGGATGAAACCAAAGAATCACTTCAA 1593
Query 1282 GAGCTTGTCATGCTTCCTCTACGTAGGCCTGACCTGTTCAAAGGTGGCCTTCTAAAGCCC 1341
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1594 GAGCTTGTCATGCTTCCTCTTCGTAGGCCTGACCTGTTCAAAGGTGGTCTTCTAAAGCCC 1653
Query 1342 TGCAGAGGAATCCTCCTCTTTGGACCACCTGGTACTGGGAAAACTATGATGGCAAAAGCC 1401
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1654 TGCAGAGGAATCCTCCTCTTTGGACCACCTGGTACTGGAAAAACTATGATGGCAAAAGCC 1713
Query 1402 ATTGCGAACGAAGCTGGAGCTAGTTTTATAAACGTGTCAATGTCCACAATCACTTCAAAA 1461
||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1714 ATTGCGAACGAAGCTGGGGCTAGTTTCATAAATGTGTCGATGTCCACAATCACTTCAAAA 1773
Query 1462 TGGTTTGGAGAAGACGAGAAGAACGTGAGAGCTTTGTTCACCCTTGCGGCCAAAGTGTCT 1521
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1774 TGGTTTGGAGAAGATGAGAAGAACGTGAGAGCTTTGTTCACCCTCGCGGCCAAAGTGTCT 1833
Query 1522 CCGACTATTATATTTGTGGATGAAGTGGATAGCATGCTGGGACAGAGGACAAGAGTCGGA 1581
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1834 CCAACTATTATATTTGTGGATGAAGTGGATAGTATGCTGGGACAGAGGACAAGAGTTGGC 1893
Query 1582 GAGCATGAAGCTATGAGGAAGATCAAAAATGAGTTCATGACACATTGGGATGGGCTTATG 1641
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1894 GAGCATGAAGCTATGAGGAAGATCAAAAATGAGTTCATGACACACTGGGATGGGCTTATG 1953
Query 1642 TCGAATGCTGGTGACCGTATTCTCGTTCTTGCAGCAACAAACAGGCCTTTTGATCTCGAT 1701
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1954 TCAAATGCGGGTGACCGTATTCTCGTTCTTGCAGCAACAAACAGACCATTTGATCTCGAT 2013
Query 1702 GAAGCCATCATCAGGAGGTTTGAGAGAAGAATCATGGTGGGTCTTCCATCGGTCGAGAGC 1761
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2014 GAAGCTATCATCAGGAGGTTTGAGCGAAGAATCATGGTGGGTCTTCCATCGGTCGAGAGC 2073
Query 1762 AGAGAGAAGATCTTAAGAACCTTATTGTCAAAAGAGAAAACAGAGAATCTTGATTTCCAT 1821
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074 AGAGAGAAGATCTTGAGAACCTTATTGTCAAAAGAGAAAACAGAGAATCTTGATTTCCAA 2133
Query 1822 GAGCTTGCGCAGATGACAGATGGTTATAGTGGAAGTGATCTCAAGAACTTTTGCACAACA 1881
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2134 GAGCTTGCGCAGATGACAGATGGCTATAGTGGAAGTGATCTCAAGAACTTTTGCACAACA 2193
Query 1882 GCAGCATATCGACCAGTGAGGGAGCTGATAAAGCaagagtgcttgaaagaccaggagagg 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2194 GCAGCATATCGACCAGTGAGGGAGCTGATAAAGCAAGAGTGCTTGAAAGACCAGGAGAGG 2253
Query 1942 aagaagaaagaggaagcaaagaagagtagtgaagagggatctgaaacaaaagaagaagTA 2001
| ||||| |||||||||| |||||| ||||||||| ||||||||| ||||||||||||||
Sbjct 2254 AGGAAGAGAGAGGAAGCAGAGAAGAATAGTGAAGAAGGATCTGAAGCAAAAGAAGAAGTA 2313
Query 2002 CCTGCGGAGAGAGACATAACGTTGAGACCTTTGAGCATGGAAGACATGAAAGTAGCTAAA 2061
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2314 TCTGAAGAGAGAGGCATAACGTTGAGACCTTTGAGCATGGAAGACATGAAAGTAGCTAAA 2373
Query 2062 AGCCAGGTTGCTGCTAGTTTTGCAGCAGAAGGAGCAGGAATGAACGAACTCAAGCAGTGG 2121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2374 AGCCAGGTTGCTGCTAGTTTTGCAGCAGAAGGAGCAGGAATGAACGAACTCAAGCAGTGG 2433
Query 2122 AATGATTTGTATGGAGAAGGAGGCTCCAGGAAGAAGGAACAGCTTTCTTACTTCCTTTAA 2181
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2434 AATGATTTGTATGGAGAAGGAGGCTCCAGGAAAAAGGAACAGCTCTCTTACTTCCTTTAA 2493
Score = 1325 bits (717), Expect = 0.0
Identities = 767/791 (97%), Gaps = 4/791 (1%)
Strand=Plus/Plus
Query 374 GGACCTTGCGTAGGCACACAAGTGGCAACGATCTTCATTCAAGGGGCTTTGACGTTACAA 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GGACCTTGCGTAGGCACACAAGTGGCAACGATCTTCATTCAAGGGGCTTTGACGTTACAA 616
Query 434 GTCATCCTCCGCGACTCAAGCGGAATGCTTCTGCTGCTTCTGATATGAGTAGCATATCAT 493
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GTCAGCCTCCACGACTCAAGCGGAATGCTTCTGCTGCTTCTGATATGAGTAGCATATCAT 676
Query 494 CCCGTTCCGCAACTTCTGTTTCAGCTTCAAGCAAACGCAGTGCAAACTTATGCTTTGATG 553
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 677 CCCGTTCTGCAACTTCTGTTTCAGCTTCAAGCAAACGCAGTGCTAACTTGTGCTTTGATG 736
Query 554 AGAGACTTTTCCTTCAGTCACTTTACAAGGTCTTGGTTTCGATTTCAGAAACCAATCCTA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 AGAGACTTTTCCTTCAGTCACTTTACAAGGTCTTGGTTTCGATTTCAGAAACCAATCCTA 796
Query 614 TAATCATATACCTGAGGGACGTTGAGAAGCTTTGTCAGTCAGAAAGGTTCTACAAGTTGT 673
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TAATAATATACCTGAGGGATGTTGAGAAGCTTTGTCAGTCAGAAAGGTTCTACAAGTTGT 856
Query 674 TCCAGAGGCTCTTGACTAAGCTTTCTGGCCCTGTTTTGGTTCTTGGCTCAAGACTATTGG 733
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 857 TCCAGAGGCTCTTGACGAAGCTTTCTGGCCCTGTTTTGGTTCTCGGCTCAAGACTATTGG 916
Query 734 AACCCGAAGATGACTGTCAAGAAGTAGGAGAGGGCATTTCTGCTTTGTTTCCTTACAACA 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 AACCCGAAGATGACTGTCAAGAAGTAGGAGAGGGCATTTCTGCTTTGTTTCCTTACAACA 976
Query 794 TCGAGATCAGACCGCCAGAGGATGAAAATCAACTCATGAGCTGGAAAAC-ACGATTTGAA 852
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 977 TCGAGATCAGACCGCCAGAGGATGAAAATCAACTCATGAGCTGGAAAACGA-GATTTGAA 1035
Query 853 GATGACATGAAAGTGATACAGTTTCAGGACAACAAGAACCATATAGCAGAGGTTCTTGCG 912
|||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||
Sbjct 1036 GATGACATGAAAGTGATACAGTTTCAAGACAACAAGAACCACATAGCCGAGGTTCTAGCG 1095
Query 913 GCTAATGATCTTGAATGTGATGACTTAGGTTCCATATGCCATGCAGATACAATGTTCCTA 972
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GCTAATGATCTTGAGTGTGATGACTTAGGTTCCATATGCCATGCAGATACAATGTTCCTA 1155
Query 973 AGCAGTCACATTGAGGAAATTGTGGTTTCTGCAATCTCCTACCATCTGATGCACAACAAA 1032
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1156 AGCAGTCACATTGAGGAAATTGTTGTTTCTGCAATCTCCTACCATCTGATGAACAACAAA 1215
Query 1033 GAACCCGAATACAAAAACGGGAGGCTTGTAATATCTTCCACTAGCTTGTCCCATGGACTG 1092
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1216 GAACCCGAATACAAAAACGGGAGGCTTGTAATATCTTCTAATAGCTTGTCCCATGGACTG 1275
Query 1093 AGTATATTACAGGAAGGT-AACGGATGCTTTGAGGACTCCTTGAAGCTGGACACAAACAT 1151
| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1276 AATATATTACAGGAAGGTCAA-GGATGCTTTGAGGACTCCTTGAAGCTGGACACAAACAT 1334
Query 1152 TGACTCCAAGG 1162
||||||||||
Sbjct 1335 CGACTCCAAGG 1345
Score = 569 bits (308), Expect = 3e-161
Identities = 328/338 (97%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCAGAAGAGCGTGTTGTTTTCCGCGTTAGGGGTTGGTGTTGGTTTAGGCATCGGT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1 ATGGAGCAGAAGAGCGTGTTGTTTTCCGCGTTAGGGGTTGGTGTTGGGTTAGGGATTGGT 60
Query 61 CTAGCTTCGGGTCAGAGTTTGGGTAAATGGGCAAACGGGTCTATTTCTGCGGAGGATGGA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAGCGTCGGGTCAGAGTTTGGGTAAATGGGCAAACGGGTCTATTTCTGCGGAGGATGGA 120
Query 121 CTTACCGGAGAGAAGATTGAGCAAGAGTTGGTTAGGCAGATTGTTGATGGCAGAGAGAGT 180
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTAACCGGAGAAAAGATTGAGCAAGAGTTGGTTAGGCAGATCGTTGATGGCAGAGAGAGT 180
Query 181 AGTGTCACTTTCGACGAGTTTCCTTATTACCTAAGTGAGAAAACTCGGCTTTTATTGACG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTGTCACTTTCGACGAGTTTCCTTATTACCTAAGTGAGAAAACTCGGCTTTTATTGACA 240
Query 241 AGTGCAGCTTATGTTCACCTAAAGCAATTTGATATCTCGAAGCACACGCGTAATCTTGCA 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 AGTGCAGCTTATGTTCACCTAAAGCAATCTGATATCTCGAAGCACACGCGTAATCTTGCA 300
Query 301 CCGGGAAGTAAGGCCATTCTTCTGTCTGGACCTGCTGA 338
|| |||||||||||||||||||||||||||||||||||
Sbjct 301 CCTGGAAGTAAGGCCATTCTTCTGTCTGGACCTGCTGA 338
> AT5G52882.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:21433879-21438659
REVERSE LENGTH=3063
Length=3063
Score = 1016 bits (550), Expect = 0.0
Identities = 872/1028 (85%), Gaps = 20/1028 (2%)
Strand=Plus/Plus
Query 1162 GAGGTGGCTCCTGATAATGAATTCGAGAAGCGCATAAGACCAGAGGTTATCCCAGCAAAT 1221
||||| | |||||||||||| || |||||||| ||||||||||| ||||| |||||||||
Sbjct 1768 GAGGTTGTTCCTGATAATGAGTTTGAGAAGCGTATAAGACCAGAAGTTATACCAGCAAAT 1827
Query 1222 GAGATTGGTGTGACTTTTGCTGATATAGGTTCACTGGATGAAACCAAAGAATCGCTTCAA 1281
|||||||||||||| ||||| ||||| ||||| || || ||||| ||||| |||||||||
Sbjct 1828 GAGATTGGTGTGACATTTGCAGATATTGGTTCTCTAGACGAAACAAAAGATTCGCTTCAA 1887
Query 1282 GAGCTTGTCATGCTTCCTC-TACGTAGGCCTGA-CCTGTTCAAAGGTGGCCTTCTAAAGC 1339
|| ||||| |||||||| | || | || || || | | ||| |||| || ||||| ||||
Sbjct 1888 GAACTTGTAATGCTTCCACTTA-GAAGACCGGATCTTTTTC-AAGGCGGTCTTCTCAAGC 1945
Query 1340 CCTGCAGAGGAATCCTCCTCTTTGGACCACCTGGTACTGGGAAAACTATGATGGCAAAAG 1399
| || ||||||||||| | || || |||||||||||||| ||||| ||| | |||||||
Sbjct 1946 CATGTAGAGGAATCCTATTATTCGGTCCACCTGGTACTGGCAAAACAATGCTTGCAAAAG 2005
Query 1400 CCATTGCGAACGAAGCTGGAGCTAGTTTTATAAACGTGTCAATGTCCACAATCACTTCAA 1459
| ||||| || ||||||||||||||||| || || || || ||||| |||||||||||||
Sbjct 2006 CAATTGCAAATGAAGCTGGAGCTAGTTTCATCAATGTCTCCATGTCTACAATCACTTCAA 2065
Query 1460 AATGGTTTGGAGAAGACGAGAAGAACGTGAGAGCTTTGTTCACCCTT-GCGGCCAAAGTG 1518
||||||||||||||||||| ||||| ||||||||| |||| | | || || || |||||
Sbjct 2066 AATGGTTTGGAGAAGACGAAAAGAATGTGAGAGCTCTGTTTA-CTTTAGCAGCTAAAGTA 2124
Query 1519 TCTCCGACTATTATATTTGTGGATGAAGTGGATAGCATGCTGGGACAGAGGACAAGAGTC 1578
||||| || |||||||||||||||||||| ||||| ||| ||||||| |||||||||||
Sbjct 2125 TCTCCAACGATTATATTTGTGGATGAAGTTGATAGTATGTTGGGACAAAGGACAAGAGTT 2184
Query 1579 GGAGAGCATGAAGCTATGAGGAAGATCAAAAATGAGTTCATGACACATTGGGATGGGCTT 1638
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 2185 GGAGAGCATGAAGCTATGAGGAAGATTAAGAATGAGTTTATGACACATTGGGATGGGCTA 2244
Query 1639 ATGTCGAATGCTGGTGACCGTATTCTCGTTCTTGCAGCAACAAACAGGCCTTTTGATCTC 1698
||| |||| | ||||| | ||||||||||||||||| |||||||| || ||||||||
Sbjct 2245 ATGACGAAACCCGGTGAAAGGATTCTCGTTCTTGCAGCGACAAACAGACCGTTTGATCTT 2304
Query 1699 GATGAAGCCATCATCAGGAGGTTTGAGAGAAGAATCATGGTGGGTCTTCCATCGGTCGAG 1758
|||||||| ||||| |||||||||||||||||||| |||||||| ||||| ||| | |||
Sbjct 2305 GATGAAGCTATCATTAGGAGGTTTGAGAGAAGAATAATGGTGGGACTTCCTTCGATTGAG 2364
Query 1759 AGCAGAGAGAAGATCTTAAGAACCTTATTGTCAAAAGAGAAAACAGAGAATCTTGATTTC 1818
||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 2365 AGCAGAGAGAAGATCTTGAGAACTTTGTTGTCGAAAGAGAAAACAGAGAATCTTGATTTC 2424
Query 1819 CATGAGCTTGCGCAGATGACAGATGGTTATAGTGGAAGTGATCTCAAGAACTTTTGCA-C 1877
|||||||||| |||||| ||||| || || ||||||||||||||||||||||| |||| |
Sbjct 2425 CATGAGCTTGGGCAGATAACAGAAGGCTACAGTGGAAGTGATCTCAAGAACTTATGCATC 2484
Query 1878 AACAGCAGCATATCGACCAGTGAGGGAGCTGATAAAGCaagagtgcttgaaagaccagga 1937
| |||| || ||| ||||||| || |||||||| |||| || | |||||||| |||||
Sbjct 2485 A-CAGCTGCTTATAGACCAGTTAGAGAGCTGATTCAGCAGGAAAGATTGAAAGATCAGGA 2543
Query 1938 gaggaagaagaaagaggaagcaaagaagagt-agtgaagagggatctgaaacaa-aagaa 1995
||||||||||| ||| |||||| ||| || | ||||| ||| ||| || |||||
Sbjct 2544 GAGGAAGAAGAGAGAAGAAGCAG-GAAAAGGCACAGAAGA---ATCA-AAAGAAGAAGAA 2598
Query 1996 gaagTA-C--CTGCGGAGAGAGACATAACGTTGAGACCTTTGAGCATGGAAGACATGA-A 2051
| || | | ||| ||| |||| || || ||||||||||||| |||||||||||||| |
Sbjct 2599 GCAGAAGCTTCTGAGGAAAGAGTTATTACATTGAGACCTTTGAACATGGAAGACATGAGA 2658
Query 2052 AGTAGCTAAAAGCCAGGTTGCTGCTAGTTTTGCAGCAGAAGGAGCAGGAATGAACGAACT 2111
| |||||||| |||||| ||||| ||||||||| ||||||||||||||||||| || ||
Sbjct 2659 AA-AGCTAAAACCCAGGTAGCTGCGAGTTTTGCATCAGAAGGAGCAGGAATGAATGAGCT 2717
Query 2112 CAAGCAGTGGAATGATTTGTATGGAGAAGGAGGCTCCAGGAAGAAGGAACAGCTTTCTTA 2171
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 2718 AAAGCAATGGAATGATTTGTATGGAGAAGGAGGCTCAAGGAAAAAGGAACAGCTCACTTA 2777
Query 2172 CTTCCTTT 2179
||||||||
Sbjct 2778 CTTCCTTT 2785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108182174475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5