BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491985
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27980.1 | Symbols: | Domain of unknown function (DUF3444) ... 2477 0.0
> AT4G27980.1 | Symbols: | Domain of unknown function (DUF3444)
| chr4:13921677-13923570 FORWARD LENGTH=1894
Length=1894
Score = 2477 bits (1341), Expect = 0.0
Identities = 1676/1835 (91%), Gaps = 33/1835 (2%)
Strand=Plus/Plus
Query 1 ATGGTAATGGGAGGGGATTCAGTAGAATCAGACGTTACTGAGCTAAAA-AGTGAAGGGTA 59
|||| |||| |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1 ATGGCAATGCAAGGGGATTCAGTAGAATCAGACGTTACTGAGC-AAAACAGTGAAGGGTA 59
Query 60 TTTCAAAATCCTAGACCAGATTCATGAAAAAGCTTCATCAATTTTTGAGTTTTCGCTTCA 119
| |||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 60 TCTCAAAATCCTAGACAAGATTCAGGCAAAATCTTCATCAATTTTTGAGTTTTCGCTTCA 119
Query 120 CTTTGATGATGTCAGT-GACTCGCTGGAGAAGAGGGAAGAACGTCTGAGAGTGGTTGAAA 178
|||||||| || || | |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 120 GTTTGATGACGT-GGTCGCCTCGCTGGAGAAGAAGGAAGAACGACTGAGAGTGGTTGAAA 178
Query 179 TGAAGGAGAAGGAGATTGGTTTGCTTGAAGAGTCAGTATCTCGTAGGTTAAGTGTTTTAG 238
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 179 TGAAGGAGAAGGAGATTGGTTTGCTTGAAGAGTCAATATCTCGAAGGTTAAGTGTTTTAG 238
Query 239 AGGAGAAAGAGATAGAGTCTGATTTGAGATTGGTCATTGAAGCAAGCATCATGAGATTGG 298
||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 239 AGGAGAAAGAGATTGAAACTGATTTGAGATTGGTCATTGAAGCAAGTATCATGAGATTGG 298
Query 299 TGCTTGAGAAGCAGAGTGAATATGTAGTGACACACCTTAAAACACAGGAGAATAAGCTTG 358
|||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||||
Sbjct 299 TGCTTGAGAAGCAGAGTGAAGATTTAGTGACACAACTTAAAACAGAGGAGAATAAGCTTG 358
Query 359 GTTTGCTTCTCCATTCGACAACGAAAAAACTTGAAGATTTGATGAGTGAGTTTGACGGAA 418
||||| |||||| |||||| ||||| |||||||| || || ||||||||||||| || |
Sbjct 359 GTTTGTTTCTCCGTTCGACGACGAAGAAACTTGAGGAGCTGGTGAGTGAGTTTGATGGGA 418
Query 419 AGAAAGAGGAAGCTTGCCGGA-TTTTTGAGAAGTTTTGTGAGCTAGAGAAGGCAGAGAAG 477
||||||||| ||||||| || ||| ||||||||| |||||| |||||||||||||||||
Sbjct 419 GGAAAGAGGAGGCTTGCC-GAGTTTCTGAGAAGTTGTGTGAGTTAGAGAAGGCAGAGAAG 477
Query 478 GAGTTTGAAATGAAACAAAGAGCTGAGACTGAGAGACTGAACGAGGAAAGTGAAGCAAGG 537
|||||| | ||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 478 GAGTTTCATCTGAAACAAAGAGCTGAGACTGAGAGACGGAATGAGGAAAGTGAGGCAAGA 537
Query 538 GAGAAGGAGCTCAGGGAACTTGAAGAAGCTGTCAAAGAGAAGACTGCTGAATTGAAGAGA 597
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 538 GAGAAGGATCTCAGGGCACTTGAGGAAGCTGTCAAAGAGAAGACTGCTGAATTGAAGAGA 597
Query 598 AAGGAGGAGACTTTTGAGCTGAA-ACTGAAAGAAGAAGCTGACAGATTGA-ATGAGGAGA 655
|||||||||||||| |||||||| | |||||||||||||||| | ||||| | |||||||
Sbjct 598 AAGGAGGAGACTTTGGAGCTGAAGA-TGAAAGAAGAAGCTGAAAAATTGAGA-GAGGAGA 655
Query 656 CTGAACTGAAGAGAAAAGGTCTTGAGATTAAGGAGAAGAC-TCTGGAAAAAAGGCTGAAA 714
||||||||| |||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 656 CTGAACTGATGAGAAAAGGTCTTGAGATTAAGGAGAAGACAT-TGGAAAAAAGATTGAAA 714
Query 715 GAGCTTGAGCTGAAGCAGATGGAACTAGAAGAAAGATCAAGACCACAACTTGTGGAAGCA 774
|||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||||
Sbjct 715 GAGCTTGAATTGAAGCAGATGGAATTAGAAGAAACATCAAGACCACAACTTGTAGAAGCA 774
Query 775 GAGTCTCGAAAGAGATCCAACCTTGAAATTGAACCTCCCTTGTTGGTAAAGAATGATGAT 834
|||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 775 GAGTCTCGGAAGAGATCCAACCTTGAAATTGAACCTCCTTTGTTGGTAAAG-A--ATGAT 831
Query 835 AGTGACGTTGATT-TTCTTACTCCTCAAGCCAAAAAACAGAAGTCTCAGGAAGCAAATGA 893
||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 832 AGTGACGCTGATTCTT-GTACTCCTCAAGCCAAGAAACAGAAGTCTCAGGAAGCAAATGA 890
Query 894 TGGAGACATTGAAGGAATTGTCTGCACAGATGAAACTGATAAGGATCCTAAAC-CACTAA 952
||||||||||||||||||||||||||||||| ||| | || |||||||| ||| || |||
Sbjct 891 TGGAGACATTGAAGGAATTGTCTGCACAGATAAAAGTTATGAGGATCCT-AACTCATTAA 949
Query 953 CTTGT-CTCGATACAAAGTTTAGTGATTTTAGCAAGTCAATGAGCTCTTTTGCTGTTGAT 1011
||||| || ||||||||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 950 CTTGTCCT-GATACAAAGCTTAATGATTTTAGCAAGTCAATGAGCTCATTTGCTGTTGAT 1008
Query 1012 CAAGTATGGGCTTTATATGATCCTAGAGATGATATGCCTAGGACCTATGTCCAGATCAGG 1071
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1009 CAAGTATGGGCTTTATATGATCCTAGAGATGATATGCCTAGGAACTATGCCCAGATCAGG 1068
Query 1072 GAAATTTTTGACTCCCAGTTGAGTTTGCAGGTGACATTGCTTGGACCTGTCAAAACTACA 1131
|| |||||||| |||||||||||||||||||||||| | |||| || |||||||||||||
Sbjct 1069 GAGATTTTTGAGTCCCAGTTGAGTTTGCAGGTGACACTACTTGAACATGTCAAAACTACA 1128
Query 1132 ACAGGTGAGCAGTCTATTCTCAGTGGTTGTGGGAGATTCGAATATGGAGATACAGAGATC 1191
| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1129 AAAGATGAGCAGTCTATTCTCAGTGGTTGTGGGAGATTTGAATATGGAGATACAGAGATC 1188
Query 1192 AAGAGCCACTTGATGTTTGCTCATGAGATGGATCACATCAAATGTGCTGA-GAATGTCAT 1250
||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 1189 AAGAGCCACTTGATGTTTGCTCATGAGATGGATCACATCAAATCTGCTGAAGAG-GTCAT 1247
Query 1251 TGTCAACCCGAGAAAAGGCGAAACATGGGCTCTATTCAGAGATTGGAATGCAAGTTGGAA 1310
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1248 TGTGAACCCGAGAAAAGGCGAAACATGGGCTCTTTTCAGTGATTGGAATGCAAGTTGGAA 1307
Query 1311 CAGTCAACC-AGATCTGCACGAGCCTCCTTATAGATACGACTTTGTTGAAGTCATCTCTG 1369
|||||| || ||| || || |||| ||||||||||||||||||||| ||||||||||| |
Sbjct 1308 CAGTCA-CCTAGAACTACAGGAGCTTCCTTATAGATACGACTTTGTGGAAGTCATCTCCG 1366
Query 1370 AGTTTGAAGATCTTATAGGCATTCTAGTGGCCTATATGGGGAGAGTTGAAGGATTTGAAT 1429
||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1367 AGTTTGACGATCTTATAGGCATTCAAGTGGCCTATATGGGGAGAGTTGAAGGATACGAAT 1426
Query 1430 CGGTATTTAACCGTGCTGAGCAGCATGGATACATCAAGATTGTGATCCCACCAGGGGAAA 1489
|||| ||||||| |||||||||| |||||| ||||||||||||||||||||| | |||||
Sbjct 1427 CGGTTTTTAACCATGCTGAGCAGTATGGATGCATCAAGATTGTGATCCCACCTGCGGAAA 1486
Query 1490 TGCAGAAATTCTCTCATAAAGTTGAATCTGTTAAATTGAGTGGAAAGGAGGAAGAAGGAA 1549
|||||| ||||||||| ||||||||||| || |||||||| || ||||||||||| ||||
Sbjct 1487 TGCAGAGATTCTCTCACAAAGTTGAATCAGTGAAATTGAGCGGGAAGGAGGAAGAGGGAA 1546
Query 1550 TCCCATTTACGTCTTTCAAGCTAAACCCTGCTGCTATTCCGAGATACTATCATGTGCTTG 1609
||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1547 TCCCATTTAGGTCCTTCAAGCTAAACCCTGCTGCTATGCCGAGATACTATCATGTGCTTG 1606
Query 1610 AGGAGGTGGTGGAAACGAAAATACAAATTAAAGCTCCAACGGTTGTACATCAAAATGGTT 1669
||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| |
Sbjct 1607 AGGAGGTGGTGGAAACGGAAATACAAATTAAAGATCCAACGGTCGTACATCAAAATGGAT 1666
Query 1670 CCACAAAAGATCTGCCCATAATAATAGATTGAGGGATTCAAGTCTGGTTGTT-CACCTTT 1728
||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 1667 CCACAAAAGATCTTCCCATAATAATAGATTGAGGGATTCAAGCCTGGTTGGTGCACCTTT 1726
Query 1729 CTTATCTATGCAAATATATATATC--TATGTAGAGTGCCACTGGTGATGGCTTTAGATGT 1786
||||||||||||||||||||| | |||||||||||| ||||||||||| || ||
Sbjct 1727 CTTATCTATGCAAATATATATTTAAGTATGTAGAGTGCT--TGGTGATGGCTG-AG--GT 1781
Query 1787 TGCAGGAAGTAGTGAAACTGTAATCTTTTTGGTTT 1821
|||||||||||||||||||||||||||||||||||
Sbjct 1782 TGCAGGAAGTAGTGAAACTGTAATCTTTTTGGTTT 1816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90109978275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5