BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491986
Length=378
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 340 4e-93
AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 204 6e-52
AT3G44130.1 | Symbols: | F-box and associated interaction doma... 122 2e-27
> AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Ribosomal protein S5 domain 2-like superfamily protein
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453
Score = 340 bits (184), Expect = 4e-93
Identities = 235/259 (91%), Gaps = 6/259 (2%)
Strand=Plus/Plus
Query 120 TTTTTCATCAGGAGGCGTGTTTTGTTGCTTGAGTATGACCAAAGTTGAAAGGGAGTATGA 179
||||||| | ||||| |||||||| |||| | | || |||||||||| ||||||||
Sbjct 201 TTTTTCAGAAAGAGGCTTGTTTTGTCGCTT--G-A-GA--AAAGTTGAAAAAGAGTATGA 254
Query 180 AACGATACTGAAAAAGACGCTACAGAATATTTGTGTTTTGACAGTTGTTACAAATACCGC 239
|||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||| |
Sbjct 255 AACGATACTGAAAAGGACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCAC 314
Query 240 CACCTCAGTGATAATTCAGGTTGTACATGATGGTGGTTATGTATCGTCTTTATGTTCCTT 299
|||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 315 CACCTCAGTGATTATTCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTT 374
Query 300 GCACCTTGGTAAACATTTACTGATGTTGTCTGAAACACATATAATCCGGTATAAACAATG 359
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 375 TCACCTTGGTAAACATTTACTAATGCTGTCTGAAACACATATAATCCGGTATAAACAATG 434
Query 360 TCTGTTTGAGTATTTATAG 378
|||||||||||||||||||
Sbjct 435 TCTGTTTGAGTATTTATAG 453
Score = 169 bits (91), Expect = 2e-41
Identities = 110/119 (92%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 1 ATGGGATTCATTGAACTGTCTCGTTTATATTTTCAGGGGATACAAAAGTTCTAGCTGCAC 60
||||||| ||| ||||| |||||||||||||||||| |||||||||||||||| |||| |
Sbjct 32 ATGGGATACATGGAACTCTCTCGTTTATATTTTCAGAGGATACAAAAGTTCTATCTGCGC 91
Query 61 AATACGGACCTAAAGCAGGAAAGAAGAAGAACGAAAATGCTGAGAAGGCTTGTTTTGAA 119
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 92 AATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAATGCTGAGAAGGCTTGTTT-GAA 149
> AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062
Score = 204 bits (110), Expect = 6e-52
Identities = 202/245 (82%), Gaps = 11/245 (4%)
Strand=Plus/Plus
Query 35 AGGGGATACAAAAGTTCTAGCTGCACAATACGGACCTAAAGCAGGAAAGAAGAAGAACGA 94
|||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||
Sbjct 227 AGGGGATACAAAAGTTCTAGCTGCGGTTTATGGACCTAAAGCAGGAACGAAAAAGAACGA 286
Query 95 AAATGCTGAGAAGGCTTGTTTTGAATTTTTCATCAGGAGGCGTGTTTT-GTTGCTTGAGT 153
||||||||||||||||||||||||| | | || ||| || | | | || || |
Sbjct 287 AAATGCTGAGAAGGCTTGTTTTGAAGTCAT-AT--GGAAGCCTAAATCCGG-GCA-GA-T 340
Query 154 ATG-ACCAAAGTTGAAAGGGAGTATGAAACGATACTGAAAAAGACGCTACAGAATATTTG 212
|| | |||||||||| ||||||||| | |||| |||||| |||| |||||| ||||||
Sbjct 341 -TGGA--AAAGTTGAAAAGGAGTATGAGATGATATTGAAAAGGACGATACAGAGTATTTG 397
Query 213 TGTTTTGACAGTTGTTACAAATACCGCCACCTCAGTGATAATTCAGGTTGTACATGATGG 272
||||||||| ||| | |||||||| ||||||||||||||||||||||||| |||||||
Sbjct 398 TGTTTTGACTGTTAATCCAAATACCACCACCTCAGTGATAATTCAGGTTGTGCATGATGA 457
Query 273 TGGTT 277
|||||
Sbjct 458 TGGTT 462
> AT3G44130.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:15881870-15883638 FORWARD LENGTH=942
Length=942
Score = 122 bits (66), Expect = 2e-27
Identities = 77/82 (94%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 38 GGATACAAAAGTTCTAGCTGCACAATACGGACCTAAAGCAGGAAAGAAGAAGAACGAAAA 97
|||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct 798 GGATACAAAAGTTCTAACTGCACAATACGGACCTAAAGCAAGAACGAAAAAGAACGAAAA 857
Query 98 TGCTGAGAAGGCTTGTTTTGAA 119
|||||||||||||||||| |||
Sbjct 858 TGCTGAGAAGGCTTGTTT-GAA 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17794783146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5