BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491996
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27890.1 | Symbols: | HSP20-like chaperones superfamily pro... 1251 0.0
AT5G53400.1 | Symbols: BOB1 | HSP20-like chaperones superfamily... 462 2e-129
> AT4G27890.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr4:13886033-13888276 FORWARD LENGTH=1077
Length=1077
Score = 1251 bits (677), Expect = 0.0
Identities = 839/913 (92%), Gaps = 27/913 (3%)
Strand=Plus/Plus
Query 1 ATGGCGATTATCTCTGAGATGGAGGAGGCGAGACCCTCGATGGTGCCGTTT-AGTGCAAG 59
||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 1 ATGGCGATTATCTCTGAGATGGAGGAGGCGAGACCCTCGATGGTGCC-TTTCACCGCAAG 59
Query 60 TTTCGATCCTTCAAACCCAATAGGGTTTTTGGAGAAAGTCCTTGACGTTATCGGGAAAGA 119
||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct 60 TTTTGATCCTTCAAACCCAATAGCGTTTTTGGAGAAAGTTCTTGATGTTATCGGGAAAGA 119
Query 120 GAGCAACTTTCTGAGGAAAGAAACGGCTGAGAAGGAGATCGTGGCTGCTGTTAGGGCTGC 179
|||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 120 GAGCAATTTTCTGAAGAAAGACACGGCTGAGAAGGAGATCGTGGCTGCTGTTATGGCTGC 179
Query 180 AAAAG-AGAGGTTGAGGGAAGCCGAGAAGAAGAAGTTGGAGAAGGAGAATGTTAAGCCGA 238
||| |||||||||||||||| ||||||||||||||||||||||||| |||| |
Sbjct 180 -GAAGCAGAGGTTGAGGGAAGCGGAGAAGAAGAAGTTGGAGAAGGAGAGTGTT------A 232
Query 239 CGGAGCCCATGGAGGTTGAGAAGGCAAAGAAGGATAGCTTGAAGGCCAC---G--GG-G- 291
|| ||||||||||||||||| ||||||| |||||||||||| |||| | || |
Sbjct 233 ---AGTCCATGGAGGTTGAGAAGCCAAAGAAAGATAGCTTGAAGCCCACGGAGCTGGAGA 289
Query 292 -GCC-ATGGAGGTG-G--AGAAGGCGACGGATCCCATGGAGGTTGAGAAGCCCAAGGAGG 346
||| | ||||| | | || |||||| |||||||||||| |||||||||| || ||||
Sbjct 290 AGCCGAAGGAGGAGAGCTTGATGGCGACTGATCCCATGGAGATTGAGAAGCCTAAAGAGG 349
Query 347 AAAAAGAATCTGGTCCCATCGTTCCTAACAAAGGCAATGGGCTTGATTTTGAGAAATACT 406
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 AGAAAGAATCGGGTCCCATCGTTCCTAACAAAGGCAATGGGCTTGATTTTGAGAAATACT 409
Query 407 CATGGGGACAGAATCTTCAAGAGGTCACAATTAACATTCCAGTGCCAGAAGGCACTAAAT 466
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||
Sbjct 410 CATGGGGACAGAATCTCCAAGAGGTCACAATTAACATTCCAATGCCGGAAGGCACTAAAT 469
Query 467 CAAGATCTGTTACCTGTGAAATCAAGAAGAACCGTCTGAAAGTTGGTCTCAAAGGGCAAG 526
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 470 CAAGGTCTGTTACCTGTGAAATCAAGAAGAACCGTCTCAAAGTTGGTCTCAAAGGGCAAG 529
Query 527 ATCTAATCATCGATGGAGAATTCTTCACTTCTGTCAAGCCTGACGACTGCTTCTGGAATA 586
| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 530 ACCTAATCGTCGATGGAGAATTCTTCAATTCTGTCAAGCCTGACGACTGCTTCTGGAATA 589
Query 587 TCGAGGATCAAAAGATGATATCAGTGCTCTTGACAAAGCAAGACCAGATGGAGTGGTGGA 646
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 590 TCGAGGATCAAAAGATGATATCGGTGCTCTTGACAAAGCAAGACCAGATGGAGTGGTGGA 649
Query 647 AATATTGTGTGAAGGGAGAACCTGAAATAGACACTCAGAAAGTTGAACCAGAGAGCAGCA 706
| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 650 AGTATTGTGTGAAGGGAGAACCTGAGATAGACACTCAGAAAGTTGAACCAGAGACCAGCA 709
Query 707 AA-TTGGGTGATCTCGACCCTGAAACTCGCGCATCCGTTGAGAAGATGATGTTTGATCAA 765
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AACTT-GGTGATCTCGACCCTGAAACTCGCGCATCCGTTGAGAAGATGATGTTTGATCAA 768
Query 766 AGGCAAAAGCAGATGGGACTCCCAACAAGTGATGAGATAGAGAAGAAAGATATGCTCAAG 825
||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 769 AGGCAGAAGCAGATGGGACTACCAAGGAGTGATGAGATAGAGAAGAAAGATATGCTCAAG 828
Query 826 AAGTTCATGGCTCAGAATCCTGGGATGGACTTCTCTAACGCAATGTTTAAATGATGATCT 885
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 829 AAGTTCATGGCTCAGAATCCTGGGATGGACTTCTCTAATGCAAAGTTTAACTGATGATCT 888
Query 886 TTATTCAACTCTT 898
|||| ||||||||
Sbjct 889 TTATCCAACTCTT 901
> AT5G53400.1 | Symbols: BOB1 | HSP20-like chaperones superfamily
protein | chr5:21661445-21663572 FORWARD LENGTH=1247
Length=1247
Score = 462 bits (250), Expect = 2e-129
Identities = 454/551 (82%), Gaps = 20/551 (4%)
Strand=Plus/Plus
Query 341 AGGAGGAA-AAAGAATCTGGTCCCATCGTTCCTAACAAAGGCAATGG-GCTTGATTTTGA 398
|||| ||| || |||||||||||||| |||||||||||||| ||||| | |||| ||||
Sbjct 520 AGGA-GAAGAAGGAATCTGGTCCCATTGTTCCTAACAAAGGTAATGGAAC-TGATCTTGA 577
Query 399 GAAATACTCATGGGGACAGAATCTTCAAGAGGTCACAATTAACATTCCAGTGCCAGA-AG 457
||| ||||||||| |||||||| || ||||| ||| |||||||||||||||| | |
Sbjct 578 GAACTACTCATGGATCCAGAATCTCCAGGAGGTTACAGTTAACATTCCAGTGCC-TACTG 636
Query 458 GCACTAAATCA-AGATCTGTTACCTGTGAAATCAAGAAGAACCGTCTGAAAGTTGGTCTC 516
| |||||| || || ||||| ||||| || ||||| |||||||| || |||||||||
Sbjct 637 GGACTAAAGCACGGA-CTGTTGTATGTGAGATTAAGAAAAACCGTCTCAAGGTTGGTCTC 695
Query 517 AAAGGGCAAGATCTAATCATCGATGGAGAATTCTTCAC-TTCTGTCAAGCCTGACGACTG 575
||||| || |||| |||| ||||||| || ||| | | ||||| |||||||| |||||
Sbjct 696 AAAGGCCAGGATCCAATCGTCGATGGGGAGCTCTAC-CGATCTGTGAAGCCTGATGACTG 754
Query 576 CTTCTGGAATATCGAGGATCAAAAGATGATATCAG-TGCTCTTGACAAAG-CAAGACCAG 633
|| |||||||||||||||||||||| |||| || | | |||||||| ||| | || |||
Sbjct 755 CTACTGGAATATCGAGGATCAAAAGGTGATTTC-GATTCTCTTGACTAAGTC-TGATCAG 812
Query 634 ATGGAGTGGTGGAAATATTGTGTGAAGGGAGAACCTGAAATAGACACTCAGAAAGTTGAA 693
|||||||||||||||| |||||||| || ||||||||||| || |||||||||||||||
Sbjct 813 ATGGAGTGGTGGAAATGCTGTGTGAAAGGTGAACCTGAAATCGATACTCAGAAAGTTGAA 872
Query 694 CCAGAGAGC-AGCAAATTGGGTGATCTCGACCCTGAAACTCGCGC-ATCCGTTGAGAAGA 751
||||||| | || ||||| ||||| || || || ||||||||| | | | |||||||| |
Sbjct 873 CCAGAGA-CTAGTAAATTAGGTGACCTTGATCCAGAAACTCGCTCGA-CTGTTGAGAAAA 930
Query 752 TGATGTTTGATCAAAGGCAAAAGCAGATGGGACTCCCAACAAGTGATGAGATAGAGAAGA 811
||||||||||||||||||||||||||||||| || |||||||| || ||| || |||||
Sbjct 931 TGATGTTTGATCAAAGGCAAAAGCAGATGGGTCTTCCAACAAGCGAGGAGCTACAGAAGC 990
Query 812 AAGATATGCTCAAGAAGTTCATGGCTCAGAATCCTGG-GATGGACTTCTCTAACGCAATG 870
|||| || || ||||| |||||| || || |||| || |||||||||||| || |||| |
Sbjct 991 AAGAGATCCTTAAGAAATTCATGTCTGAGCATCC-GGAGATGGACTTCTCAAATGCAAAG 1049
Query 871 TTTAAATGATG 881
||||| |||||
Sbjct 1050 TTTAACTGATG 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49329932354
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5