BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491998
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27840.1 | Symbols: | SNARE-like superfamily protein | chr4... 1303 0.0
> AT4G27840.1 | Symbols: | SNARE-like superfamily protein | chr4:13865045-13866287
REVERSE LENGTH=1243
Length=1243
Score = 1303 bits (705), Expect = 0.0
Identities = 1012/1146 (88%), Gaps = 78/1146 (7%)
Strand=Plus/Plus
Query 2 TCATCGTTTTGGTTTCGCCAATAATGGAACTCTTTTTCCACCATTTTCCCGGAAAATCTC 61
||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 3 TCATCTTTTTGGTTTCGCCAATAATGGAACTCTTCTTCCACCATTTTCCTGGAAAATCTC 62
Query 62 GCAATCGAGAAGATGGATTTCTAGACAGATAAATCTAGAATCACTCAAATCTCTG--C-T 118
| |||||||||||| || ||||||||||||||||||||||||||||||||||| | |
Sbjct 63 GGTATCGAGAAGATGAATCCCTAGACAGATAAATCTAGAATCACTCAAATCTCTGCTCTT 122
Query 119 CTT-C---T----TC----CG-A---T---TTTTGTATCTAGCTACACTGTTCTCtt--- 156
||| | | || || | | |||||||||| |||||||||||| ||
Sbjct 123 CTTCCGATTCAGATCGTATCGAATTTTGAATTTTGTATCTCGCTACACTGTTCGATTGAG 182
Query 157 -tttttttttttCCGATTAATTCTG-ATCGGATTTTG--TTTTTGCTCGATATAGAATGA 212
|| ||||||||||||| |||| | ||||||||||| ||||| |||||||||||||||
Sbjct 183 AATTCTTTTTTTCCGATTGATTC-GAATCGGATTTTGTTTTTTTCCTCGATATAGAATGA 241
Query 213 TTTCGAATCCACGTCTGTTGTTCTACTCCTGCATTGCGAAAGGAACAGTGATTCTCGCTG 272
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 242 CTTCGAATCAACGTATGTTGTTCTACTCCTGCATTGCGAAAGGAACAGTGATTCTCGCAG 301
Query 273 AGTTTGCTTCAAAGGAAGAGCCAGGAATCGAAGATCTAGCTTTGAGATGCATTGAGAACA 332
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AATTCGCTTCAAAGGAAGAGCCAGGAATCGAAGATCTAGCTTTGAGATGCATTGAGAACG 361
Query 333 TACCTCCACATCATTCGATGATCTCTCACACAGTCCATAAAAGAACCTACGCTTTGATCA 392
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 362 TACCTCCACATCATTCGATGATCTCTCACACAGTCCATAAGAGAACCTACGCTTTGATCA 421
Query 393 TCGACGGATTGTTTTCATATTTCGCGATTTTAGACGAGGTCGTAGCGAAATCGGAGTCTA 452
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 422 TCGATGGATTGTTTTCGTATTTCGCGATTTTAGATGAGGTCGTAGCGAAATCGGAGTCTG 481
Query 453 TATGGCTCTTCAATCGATTGAAATCAGCTACAGCGTCTCTAATGGAAGACGGATCTACGG 512
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 482 TATGGCTATTCAATCGATTGAAATCAGCTACAGAGTCTCTAATGGAAGACGGATCTACTG 541
Query 513 CGGATTCGTTGGATAATCCGACTCAACACTGTCTCCAATCAAAGCTCGATCCAATTTTCG 572
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 542 CGGATTCGTTGGATAATCCGACTCAACACTGTCTCCAATCAAAGCTAGATCCAGTTTTCG 601
Query 573 CTGAGATCGCTAATGGTGGTGGTAATACTAATAATAACAAGGATTTGGAATTGGAGTTAG 632
||||||| ||| | |||||||||| | | |||||| ||||||||||||||||||
Sbjct 602 CTGAGATTGCTGCTATTGGTGGTAAT-C-A-TAATAA---GGATTTGGAATTGGAGTT-- 653
Query 633 GTATGGTTGGATCACCGAGGAGTATAACGAGGGAGATTAAGA--A-TAATCAGAGTTTGG 689
| || |||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 654 -T--GG----ATCACCGAGGAGTATAGCGAGGGAGATTAAGAGTAATAATCAGAGTTTGG 706
Query 690 ATTCGTCGAGAGG-ACGAAAAGGCGGTGCGTTGATGCCGCTTTTAGGAAAGCCATTGAGG 748
||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 707 ATTCGTCCA-AGGGACGAAAAGGCGGTGCGTTGATGCCGCTTTTAGGAAAGCCGTTGAGG 765
Query 749 GTGTTGAAGAACAAGAAGAGATTGCAGACGGAAGCGAAAAGTGAAGGAAATTGGAATGAG 808
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 766 GTGTTGAAGAACAAGAAGAGATTGCAGACGGAAGCGAAAAGTGAAGGTCATTGGAATGAG 825
Query 809 AAGAAGATGGATTTAGGAGGAGG---TAAGGGAGTGAGAAATGGTTTGATG-ATTCATGA 864
||||||||||| |||||||||| ||| |||||||| ||||||||||| || || |
Sbjct 826 AAGAAGATGGACCTAGGAGGAGGAGGTAAAGGAGTGAGGAATGGTTTGATTCATG-ATCA 884
Query 865 TCATCATAGACAAAAGGCAAAACAGATATGGAGGAAACATGTGTGGATTGTTTTGGTGTT 924
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 885 TCATCATAGACAAAAGGCAAAACAGATATGGAGGAAACATGTTTGGATTGTTTTGATGTT 944
Query 925 TGATCTCTGTATCTGTCTTGTTCTCTTTGGAATCTGGCTTTGGGTTTGTCAAGGGTTTCA 984
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 945 TGATCTCTGTATCTGCCTTGTTCTCTTTGGAATCTGGCTTTGGATTTGTCAAGGGTTTCA 1004
Query 985 ATGCATCGATGGGTAATTATCT--G-T-------G----GT-TG----AATGTTTTTCAA 1025
|||||||||||||||||||||| | | | || || ||||||| ||
Sbjct 1005 ATGCATCGATGGGTAATTATCTTCGATCATCTAAGTTATGTGTGGTTGAATGTTTAAAAA 1064
Query 1026 AA-T--CCGAGGTGTTGTTTCCAGGGTTTAAAA-GAAAGCCTGGTTTACACGTTTGTGAT 1081
|| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1065 AAATATCCGAGGTGTTGTTTCCAGGGTTTAAAAAGAAAGCCTGGTTTACACGTTTGTGAT 1124
Query 1082 GATGTT 1087
||||||
Sbjct 1125 GATGTT 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53262778245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5