BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492001 Length=693 Score E Sequences producing significant alignments: (Bits) Value AT4G27810.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 872 0.0 > AT4G27810.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53030.1); Has 73 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:13854493-13855718 REVERSE LENGTH=786 Length=786 Score = 872 bits (472), Expect = 0.0 Identities = 610/674 (91%), Gaps = 20/674 (3%) Strand=Plus/Plus Query 1 ATTTCATATAACGTCAAAGAAAGTTTCTTATTCAGaaaaaaaaaaaGCTATGGATTTTGA 60 ||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||| Sbjct 1 ATTTCATATAACGTCAAAGAAAGTTTCTTATTCAG--AAAAACAAGGCGATGGATTTTGA 58 Query 61 ATTTGATGATCAAGAACGGTTTTGTGCGACTCCTAAGCTTCCTCTGTTCTCAAAACCATT 120 ||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| Sbjct 59 ATTTGATGATCAAGAACGGTTTTGTGCGACTCCTAAGCTTCCTTTGTTCTCGATTCCATT 118 Query 121 GAACAGAGCATGTGACACTCCTGGCCTAGCGACACCGCCTGTGAACATCGCTGGATCGGT 180 |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| || Sbjct 119 TAACAGAGCATGTGACACTCCAGGGCTAGCGACGCCGCCTGTGAACATCGCTGGATCAGT 178 Query 181 CCCTTTTCTATGGGAGGAAGCCCCGGGAAAGCCTCGCGTTTCTGATGAGAACAAACCGCC 240 |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| Sbjct 179 ACCTTTTCTATGGGAGGAAGCTCCGGGAAAACCTCGCGTCTCTGATGAGAACAAACCGCT 238 Query 241 GGCTTCCAAGCAGAACGCC-GA-A-GGAGGAGGAGGAG---TCGTGCGATGCCTCGAGCT 294 ||||||||||||||||| || | ||||||||||||| ||||||| ||||| ||||| Sbjct 239 GGCTTCCAAGCAGAACGAAAGAGAAGGAGGAGGAGGAGGAGTCGTGCGGTGCCTTGAGCT 298 Query 295 TCCGCCGAGGCTGTTTTTTCCAGCTGA-GAATGAGCCATCTCCGACCACAGTTCTTGATG 353 |||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||| Sbjct 299 TCCGCCGAGGCTATTTTTTCCAGCCGATGA-TGAGCCATCTCCGACCACAGTTCTTGATG 357 Query 354 GTCCTTACGATATACCTCGTCGGTCTCTATCGGTGATAAGGAGAAGCGACGGAGCCTCTG 413 | ||||||||| ||||||| |||||| |||| ||||||||||||||||| ||||||||| Sbjct 358 GGCCTTACGATGTACCTCGCCGGTCTTTATCAGTGATAAGGAGAAGCGAAAGAGCCTCTG 417 Query 414 AGGGTAGATTCGACTTTTCACGTTCCACTAACGGCCGCTGCTTCGACCGCGACGGCGGCG 473 ||||||||||||| |||||||||||||| || ||||||||| | | | |||| |||| Sbjct 418 AGGGTAGATTCGAGTTTTCACGTTCCACCAATAGCCGCTGCT--G-C-G--ACGGTGGCG 471 Query 474 GCGGCATAACGGTGAAGATTAGTAGAGTTAGAAGAAAAGGAAGCCTCTTGAATCTTTCTC 533 |||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 472 GCGGTACAACGGTGAAGATTAGTAGAGTTAGAAGAAAAGGAAGCCTCTTGAATCTCTCTC 531 Query 534 ATTC-A--TCGCAATTCTTGGCAAGGGTTTACCAAGGATTTAAGCAAGCGATTCCATGGA 590 |||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 532 ATTCCAAATCGCAATTCTTGGCAAGGGTTTACCAAGGATTTAAGCAAGTGATCCCATGGA 591 Query 591 GGCGGAGGCAAGATAATCTTCCACGGATGAGTTCTTCCAATATTTAAATCGAATCTCTTC 650 ||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 592 GGCGGAGACAAGAGAATCTTCCACGGATGAGTTCTTCCAATATTTAAATCAAATCTCTTC 651 Query 651 TATTTCTTTTTATA 664 ||||||||| ||| Sbjct 652 GATTTCTTTT-ATA 664 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33556410196 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5