BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492001
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27810.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 872 0.0
> AT4G27810.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G53030.1); Has 73 Blast hits to 66 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr4:13854493-13855718 REVERSE LENGTH=786
Length=786
Score = 872 bits (472), Expect = 0.0
Identities = 610/674 (91%), Gaps = 20/674 (3%)
Strand=Plus/Plus
Query 1 ATTTCATATAACGTCAAAGAAAGTTTCTTATTCAGaaaaaaaaaaaGCTATGGATTTTGA 60
||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||
Sbjct 1 ATTTCATATAACGTCAAAGAAAGTTTCTTATTCAG--AAAAACAAGGCGATGGATTTTGA 58
Query 61 ATTTGATGATCAAGAACGGTTTTGTGCGACTCCTAAGCTTCCTCTGTTCTCAAAACCATT 120
||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 59 ATTTGATGATCAAGAACGGTTTTGTGCGACTCCTAAGCTTCCTTTGTTCTCGATTCCATT 118
Query 121 GAACAGAGCATGTGACACTCCTGGCCTAGCGACACCGCCTGTGAACATCGCTGGATCGGT 180
|||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct 119 TAACAGAGCATGTGACACTCCAGGGCTAGCGACGCCGCCTGTGAACATCGCTGGATCAGT 178
Query 181 CCCTTTTCTATGGGAGGAAGCCCCGGGAAAGCCTCGCGTTTCTGATGAGAACAAACCGCC 240
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 179 ACCTTTTCTATGGGAGGAAGCTCCGGGAAAACCTCGCGTCTCTGATGAGAACAAACCGCT 238
Query 241 GGCTTCCAAGCAGAACGCC-GA-A-GGAGGAGGAGGAG---TCGTGCGATGCCTCGAGCT 294
||||||||||||||||| || | ||||||||||||| ||||||| ||||| |||||
Sbjct 239 GGCTTCCAAGCAGAACGAAAGAGAAGGAGGAGGAGGAGGAGTCGTGCGGTGCCTTGAGCT 298
Query 295 TCCGCCGAGGCTGTTTTTTCCAGCTGA-GAATGAGCCATCTCCGACCACAGTTCTTGATG 353
|||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 299 TCCGCCGAGGCTATTTTTTCCAGCCGATGA-TGAGCCATCTCCGACCACAGTTCTTGATG 357
Query 354 GTCCTTACGATATACCTCGTCGGTCTCTATCGGTGATAAGGAGAAGCGACGGAGCCTCTG 413
| ||||||||| ||||||| |||||| |||| ||||||||||||||||| |||||||||
Sbjct 358 GGCCTTACGATGTACCTCGCCGGTCTTTATCAGTGATAAGGAGAAGCGAAAGAGCCTCTG 417
Query 414 AGGGTAGATTCGACTTTTCACGTTCCACTAACGGCCGCTGCTTCGACCGCGACGGCGGCG 473
||||||||||||| |||||||||||||| || ||||||||| | | | |||| ||||
Sbjct 418 AGGGTAGATTCGAGTTTTCACGTTCCACCAATAGCCGCTGCT--G-C-G--ACGGTGGCG 471
Query 474 GCGGCATAACGGTGAAGATTAGTAGAGTTAGAAGAAAAGGAAGCCTCTTGAATCTTTCTC 533
|||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 472 GCGGTACAACGGTGAAGATTAGTAGAGTTAGAAGAAAAGGAAGCCTCTTGAATCTCTCTC 531
Query 534 ATTC-A--TCGCAATTCTTGGCAAGGGTTTACCAAGGATTTAAGCAAGCGATTCCATGGA 590
|||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 532 ATTCCAAATCGCAATTCTTGGCAAGGGTTTACCAAGGATTTAAGCAAGTGATCCCATGGA 591
Query 591 GGCGGAGGCAAGATAATCTTCCACGGATGAGTTCTTCCAATATTTAAATCGAATCTCTTC 650
||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 592 GGCGGAGACAAGAGAATCTTCCACGGATGAGTTCTTCCAATATTTAAATCAAATCTCTTC 651
Query 651 TATTTCTTTTTATA 664
||||||||| |||
Sbjct 652 GATTTCTTTT-ATA 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5