BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492014
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27700.1 | Symbols: | Rhodanese/Cell cycle control phosphat... 1548 0.0
> AT4G27700.1 | Symbols: | Rhodanese/Cell cycle control phosphatase
superfamily protein | chr4:13826374-13827823 REVERSE LENGTH=992
Length=992
Score = 1548 bits (838), Expect = 0.0
Identities = 948/999 (95%), Gaps = 16/999 (2%)
Strand=Plus/Plus
Query 1 AAGCACCACATGTTCAGAtttttttCCTAACAAGAAG-AAAGAAGTCTCAG-TGCA--G- 55
|||||||||||||||||| |||||||||||||||||| ||||||||| ||| | || |
Sbjct 1 AAGCACCACATGTTCAGA-TTTTTTCCTAACAAGAAGAAAAGAAGTCGCAGTTTCATCGT 59
Query 56 -TTTCAT-CATCTCTC-TTCCATT-AATTCTCTCATTTTCAAGGAAATATCTAAAAGAAA 111
|||| | ||| | || | | ||| |||||||||||||||||| |||||||| || |||
Sbjct 60 CTTTCTTCCAT-TATCGTGCAATTAAATTCTCTCATTTTCAAGAAAATATCT-GAA-AAA 116
Query 112 ACAGAAACATAACAGAAGAAGCTTCTCGATCAAGAGATGGCTTCACTTACTTCAATCGCC 171
|||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||| |||
Sbjct 117 ACAGAAACTTAACAGAAGCAGC-T-TCGATCAAGAGATGGCTTCACTTACTTCAATAGCC 174
Query 172 ACGCCTTACCCATCTTCATCGCAGGCTTTGCGTCTGAAATCCTCCGGAAACACTCTTTTC 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ACGCCTTACCCATCTTCATCGCAGGCTTTGCGTCTGAAATCCTCCGGAAACACTCTTTTC 234
Query 232 TCTGCCGGAGTTCGATCGGCAGCAATGGGTTCCGGTCAAAAAACGCTCAAGATTCAATGC 291
|||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct 235 TCTGCCGGAGTTCGATCGGCAGCAATGGTTTCCGGTCACAAAACGCTTAAGATTCAATGC 294
Query 292 ACTTCAACGAAACCTGCGAAACCTGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTT 351
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ACTTCAACCAAACCTGCCAAACCTGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTT 354
Query 352 CTATTGGAGAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCAACGGTTACAAAAAGAG 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CTATTGGAGAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCAACGGTTACAAAAAGAA 414
Query 412 AACAACTTTGTGATTCTTGATGTAAGACCAGAGGCAGAGTACAAGGCGGGTCATCCTCCG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AACAACTTTGTGATTCTTGATGTAAGACCAGAGGCAGAGTACAAGGCGGGTCATCCTCCG 474
Query 472 GGAGCTATCAATGTGGAGATGTACAGACTGATAAGGGAATGGACGGCATGGGACATAGCT 531
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 475 GGAGCTATCAATGTGGAGATGTACAGACTCATAAGGGAATGGACGGCATGGGACATAGCT 534
Query 532 CGTCGTCTTGGATTTGCGTTCTTCGGTATCTTCTCTGGCACAGAAGAGAATCCTGAGTTT 591
|| |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 535 CGCCGTCTTGGCTTTGCTTTCTTTGGTATCTTCTCTGGCACAGAAGAGAACCCTGAGTTT 594
Query 592 ATTCAAAGTGTAGAAGCTAAACTTGACAAAGAGGCAAAGATCATAGTTGCTTGTTCATCC 651
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 595 ATTCAAAGTGTAGAAGCTAAACTTGACAAAGAGGCAAAGATCATAGTAGCTTGTTCATCC 654
Query 652 GCGGGGACAATGAAGCCAACACAGAATCTTCCTGAAGGACAACAATCGAGGTCTCTCATA 711
||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 655 GCGGGTACAATGAAGCCGACACAAAATCTTCCCGAAGGCCAACAATCGAGGTCTCTCATA 714
Query 712 GCTGCTTATCTTCTGGTCCTCAACGGCTATAAGAACGTATTTCACCTAGAAGGTGGAATC 771
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 715 GCTGCTTATCTTCTGGTCCTTAACGGCTATAAGAACGTATTTCACCTAGAAGGTGGAATC 774
Query 772 TACGCATGGGGCAAGGAAGGTCTTCCTGTTGAAACAATTGAAGAAGACTAACCAACTTCT 831
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TACACATGGGGCAAGGAAGGTCTTCCTGTTGAAACAATTGAAGAAGACTAACCAACTTCT 834
Query 832 TCACTCTAAGAGTTATCCAGTTTTGTATATCTGTCCATTTCAGTTAGTTGCATTTAGAGA 891
| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTACTCT-AGAGTTGTCCAGTTTTGTATATCTGTCCATTTCAGTTAGTTGCATTTAGAGA 893
Query 892 TTTGGCTTTTCAGAGAGTGTTTTGAGGTTTGTAAAACTTCAGACTTTACCATGAAATCCA 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TTTGGCTTTTCAGAGAGTGTTTTGAGGTTTGTAAAACTTCAGACTTTACCATGAAATCCA 953
Query 952 GCAAACTCGACCGGAATCTAGAGAAAAAGAACTTGATTG 990
|||||||||||||||||| |||||||| |||||||||||
Sbjct 954 GCAAACTCGACCGGAATCCAGAGAAAAGGAACTTGATTG 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5