BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492017
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27680.1 | Symbols: | P-loop containing nucleoside triphosp... 2303 0.0
AT5G58290.1 | Symbols: RPT3 | regulatory particle triple-A ATPa... 93.5 5e-18
> AT4G27680.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:13821106-13823342
FORWARD LENGTH=1613
Length=1613
Score = 2303 bits (1247), Expect = 0.0
Identities = 1361/1417 (96%), Gaps = 4/1417 (0%)
Strand=Plus/Plus
Query 1 GCTCTGTCGTCGTCCACAAGAACAA-CAAACCT-TTTCCGTCTTCTGCAAACATATCCTC 58
||||||||||||||||||||||||| |||| | |||||||||||||| ||||||||||
Sbjct 1 GCTCTGTCGTCGTCCACAAGAACAACCAAATTTGTTTCCGTCTTCTGCTAACATATCCT- 59
Query 59 CGTTTTCATCTGGGAACCCTAATTTCTTGACTATTTTAAGGTTTTTATTTATCCATTTGA 118
| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 60 CTTTTTCATCTGGGAACCCTAATTTCTTGACTAACTT-AGGGTTTTATTTATCCATTTGA 118
Query 119 GATCCTCTGTAATTGAAAGGTTGAATTTTTGGAAGAGACATGGGACGTTCGTCGGAGACA 178
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 119 GATACTCTGTAATTGAAAGGTTGAATTTTTAGAAGAGACATGGGAGGTTCGTCGGAGACA 178
Query 179 AAGATCTTACAAGAACTTATACTTTACGCGGCGAGCGCTGCTTTCAGCTGCTTGGTTCTG 238
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAGATCTTACAAGAACTCATACTTTACGCGGCGAGCGCTGCTTTCAGCTGCTTGGTTCTC 238
Query 239 TTTGCGGGTCTTCGTCATCTCGATCCTAATCGTGAGGCTTCTAAAAAAGCTCTCGAGCAT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTTGCGGGTCTTCGTCATCTCGATCCTAATCGTGAGGCTTCTAAAAAAGCTCTCGAGCAT 298
Query 299 AAGAAGGAAATCTCTAAACGTTTGGGTCGTCCTCTTGTTCAGACCAATCCATACGAGGAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGAAGGAAATCTCTAAACGTTTGGGTCGTCCTCTTGTTCAGACCAATCCATACGAGGAT 358
Query 359 GTAATAGCATGTGATGTGATAAATCCAGACCACATTAATGTGGAGTTTGATTCTATTGGA 418
||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 359 GTAATTGCATGTGATGTGATAAATCCAGACCACATTGATGTGGAGTTTGGTTCTATTGGA 418
Query 419 GGACTAGAGACTATCAAGCAGGCTTTGTATGAGCTTGTGATTTTACCATTGAAGAGACCT 478
|| | ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 419 GGGTTGGAGACCATCAAGCAGGCTTTGTATGAGCTTGTGATTTTACCACTGAAAAGACCT 478
Query 479 GAGCTTTTTGCTTATGGGAAGCTTCTTGGACCTCAAAAGGGTGTCTTGCTCTATGGACCT 538
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 GAGCTTTTTGCTTACGGGAAGCTTCTTGGACCTCAAAAAGGTGTCTTGCTCTATGGACCT 538
Query 539 CCTGGTACTGGAAAGACTATGCTTGCTAAGGCTATTGCCAAAGAATCAGGAGCGGTTTTC 598
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 539 CCTGGTACTGGAAAGACTATGCTTGCTAAGGCTATTGCCAAAGAGTCAGGAGCTGTTTTC 598
Query 599 ATTAATGTTAGGGTTTCAAACCTGATGAGCAAGTGGTTTGGAGATGCTCAGAAGCTTGTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATTAATGTTAGGGTTTCAAACCTGATGAGCAAGTGGTTTGGAGATGCTCAGAAGCTTGTT 658
Query 659 TCTGCTGTGTTTAGCTTGGCCTACAAACTCCAACCTGCTATCATTTTTATTGATGAGGTT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCTGCTGTGTTTAGCTTGGCCTACAAACTCCAACCTGCTATCATTTTTATTGATGAGGTT 718
Query 719 GAGAGCTTTCTTGGTCAGCGCCGTTCAACAGATCATGAAGCAATGGCGAACATGAAGACT 778
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 719 GAGAGCTTTCTTGGTCAGCGCCGTTCAACAGATCATGAAGCTATGGCCAACATGAAGACT 778
Query 779 GAGTTTATGGCTTTATGGGATGGATTCTCTACTGATCCGCATGCAAGGGTTATGGTTCTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAGTTTATGGCTTTATGGGATGGATTCTCTACTGATCCGCATGCAAGGGTTATGGTTCTT 838
Query 839 GCTGCAACCAACAGACCATCAGAGCTTGATGAAGCAATATTGAGGCGTCTTCCTCAGGCC 898
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 839 GCTGCAACTAACAGACCGTCAGAGCTTGATGAAGCAATATTAAGGCGTCTTCCTCAGGCC 898
Query 899 TTTGAGATTGGAATACCTGATCGCCGGGAGAGAGCTGAGATATTGAAAGTGACTCTGAAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTTGAGATTGGAATACCTGATCGCCGGGAGAGAGCTGAGATATTGAAAGTGACTCTGAAA 958
Query 959 GGAGAGAGGGTGGAACCTGATATTGACTTTGATCATGTAGCTCGCTTATGCGAAGGCTAT 1018
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 959 GGAGAGAGGGTGGAACCTGATATTGACTTTGATCACATAGCTCGCTTATGCGAAGGCTAT 1018
Query 1019 ACCGGATCAGACATTTTTGATCTCTGCAAGAAAGCGGCTTACTTTCCTATCAGAGAAATC 1078
|||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||
Sbjct 1019 ACCGGATCAGACATTTTTGAGCTATGCAAGAAAGCAGCTTACTTCCCTATCAGAGAAATC 1078
Query 1079 CTAGAGGCAGAGAAAAAGGGGACACCATGTTTGTCCCCTAGGCCATTATCACAGTTGGAT 1138
||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||| |||
Sbjct 1079 CTAGATGCAGAGAGAAAGGGGAAACCATGTTTGGACCCTAGGCCATTATCACAGTTAGAT 1138
Query 1139 TTTGAGAAGGTTCTTGCTACTTCAAAGAAGACACAAGTTGCAGCAGGCGAGTACTCATTG 1198
|| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTGGAGAAGGTTCTTGCAACGTCAAAGAAGACACAAGTTGCAGCAGGCGAGTACTCATTG 1198
Query 1199 AGCTCGCAGTCCTCGGCTTGGAGAGGCTCAAGCGAACCAGATGAGGTCCAAGCAGCGATA 1258
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1199 AGCTCGCAGTCCTCGGCTTGGAGAGGCTCAAGGGAACCAGATGAGGTCCAGGCAGCGATA 1258
Query 1259 AGTGGGATCTCGAAGCTTCTACTTTCTCAGATCATTAATCTCCAGTCAGATTCTCAGGAT 1318
||||||||||||||||||||| |||||||||||||||| || |||||||| |||||||||
Sbjct 1259 AGTGGGATCTCGAAGCTTCTAGTTTCTCAGATCATTAACCTACAGTCAGAATCTCAGGAT 1318
Query 1319 TCATGGCAGCGGGATCCCGAAGAAGAATCCCGATGAAATTCCGGATCACTTTTATAAACG 1378
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1319 TCATGGCAGCGGGATCCCGAAGAAGATTCCCGATGAAATTCCGGATCACTTTTATAAACG 1378
Query 1379 TTCTGGTGTTTTCATTGGAAGTTTAGAATTTGTCACA 1415
|||||||||||||||||||||||||||||||||||||
Sbjct 1379 TTCTGGTGTTTTCATTGGAAGTTTAGAATTTGTCACA 1415
> AT5G58290.1 | Symbols: RPT3 | regulatory particle triple-A ATPase
3 | chr5:23569062-23571340 FORWARD LENGTH=1544
Length=1544
Score = 93.5 bits (50), Expect = 5e-18
Identities = 57/60 (95%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 521 GTCTTGCTCTATGGACCTCCTGGTACTGGAAAGACTATGCTTG-CTAAGGCTATTGCCAA 579
||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 667 GTCTTGCTCTATGGACCTCCTGGTACTGGAAAGACTATG-TTGGCTAAGGCTGTTGCCAA 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5