BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492019
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27660.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 819 0.0
AT5G54148.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 95.3 7e-19
> AT4G27660.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G54150.1);
Has 115 Blast hits to 109 proteins in 25 species: Archae -
0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 100; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr4:13817095-13818136
REVERSE LENGTH=812
Length=812
Score = 819 bits (443), Expect = 0.0
Identities = 658/751 (88%), Gaps = 58/751 (8%)
Strand=Plus/Plus
Query 19 AAAAAGATCGAAAATTTACAGTCGAAGAAAGG-AAAAAATGGTGATTAAGCGAAGAG-AG 76
||||||||||||| |||||||||| || |||| |||||||||||| |||||||||| |
Sbjct 72 AAAAAGATCGAAACTTTACAGTCGTAGGAAGGAAAAAAATGGTGAGAAAGCGAAGAGTTG 131
Query 77 ATAGTGGAGATTACACCAGATCCATGTgagacaaagaagaaaacgaaaagcaagcgaaga 136
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 -TAGTGGGGATCACACCAGATCCATGTGAGACAAAGAAGAAAACGAAAAGCAAGCGAAGA 190
Query 137 aagagacttagtaagaaggaggaggaagaagaagaagaCGATGGCACACCTCTTAGAGGT 196
|||||||||||| ||||||||||||||||||||||| | || |||||||| ||||||
Sbjct 191 AAGAGACTTAGT---AAGGAGGAGGAAGAAGAAGAAGA-G--GGAACACCTCTCAGAGGT 244
Query 197 ATATTTTGTCTTaaaaaaaGACAAGATATGAAGATTTTCGAGGAGAAAGAGGATTGCTTT 256
||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 245 ATATTTTGTCTCAAAACACGACAAGATATGAAGATTTTCGAAGAGAAAGAGGATTGCTTT 304
Query 257 ATCCTCGATTTCGATCCCAACGATTCATTTGATGCACGAAAGCTCTCCGATAGCCCTGAA 316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 305 ATCCTCGATTTCGATCCCAACGATTCATTTGATGCACGAAAGCTCTCCGATAGCCCTGCA 364
Query 317 TCTGAC-GACGACGACGACGTGGCGATTATCCATGAGAAAGGCCAGGTGGCTTGTAGGGA 375
||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 365 TCTGAATGT-GACGACGACGTGGCGATTGTCCATGAGAAAGGCCAGGTGGCTTGTAGGGA 423
Query 376 TTTTCCACATCCGAGGCATCTCTGCTTGAAATTCCCCTTTGAATCAAGTCAACACGCATC 435
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 424 TTTTCCACATCCAAGGCATCTCTGCTTGAAATTCCCCTTTGAATCAAGTCAACACTCATC 483
Query 436 ACATTGTAATCAGTGTTACTGTTATGTCTGCGATGTGGCTGCGCCTTGTGCCA-ATTGGA 494
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 484 ACATTGTAATCAGTGTTACTGTTATGTCTGCGATGTGGTTGCGCCTTGTGC-ATATTGGA 542
Query 495 CGGTTAGTTATGCTACACCGCATTGTGAGGCATTAGAGAAC-GCTAGATGGAAGCCTATA 553
||| ||||| |||||||||||| |||||||||||||||||| | || |||||||||||||
Sbjct 543 CGGCTAGTTTTGCTACACCGCACTGTGAGGCATTAGAGAACAG-TAAATGGAAGCCTATA 601
Query 554 CG----T-G--C-------T-C--GC--C-G---T-CGTGTAACCACTAACAAGTGAAGA 589
|| | | | | | || | | | ||||||||||| || |||||||||
Sbjct 602 CGCAAGTTGTACCGGGACCTTCCTGCTGCTGGCCTTCGTGTAACCACCAAGAAGTGAAGA 661
Query 590 CTTCTCTCATGTGATTTTGAGATTGATGAATAAGAGTATTGTTGT-----AT--C--T-- 638
||||||||||||| | |||||||||||||||||||||| |||||| || | |
Sbjct 662 CTTCTCTCATGTGGTGTTGAGATTGATGAATAAGAGTAATGTTGTGCTCTATTTCCCTCA 721
Query 639 TC---AGCTGAATGTTTTGCTTACTGAAGAAACCttttttt---GTAAAATCGGTTATTG 692
|| |||||||| ||| | ||||||||||||| ||||||| ||||||||||||||||
Sbjct 722 TCTTCAGCTGAATATTTCGTTTACTGAAGAAACTTTTTTTTTTTGTAAAATCGGTTATTG 781
Query 693 AGTTTC-T-TATAAATGGTTTTAGATTTCAC 721
|||||| | |||||||| |||||||||||||
Sbjct 782 AGTTTCATATATAAATGATTTTAGATTTCAC 812
> AT5G54148.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G54150.1);
Has 104 Blast hits to 102 proteins in 23 species: Archae -
0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 88; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr5:21975785-21977104
REVERSE LENGTH=1103
Length=1103
Score = 95.3 bits (51), Expect = 7e-19
Identities = 95/115 (83%), Gaps = 7/115 (6%)
Strand=Plus/Plus
Query 163 agaagaa-gaagaCGATGGCAC-AC-CTCTTAGAGGTATATTTTGTCTTaaaaaaaGACA 219
|||| || ||||| |||| ||| | ||| ||| || ||||| ||||| |||| ||||||
Sbjct 77 AGAAAAAGGAAGAAGATGACACGCCACTCGTAG-GG-ATATTCTGTCTGAAAACAAGACA 134
Query 220 AGATATGAAGATTTTCGAGGAGAA-AGAGGATTGCTTTATCCTCGATTTCGATCC 273
||| ||||| | ||||| || || ||||||||||||||||||||||||||||||
Sbjct 135 AGACATGAAAAGGTTCGAAGA-AACAGAGGATTGCTTTATCCTCGATTTCGATCC 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5