BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492020

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27657.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   438    2e-122


> AT4G27657.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant 
structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G54145.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr4:13813044-13813516 FORWARD LENGTH=473
Length=473

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 328/370 (89%), Gaps = 14/370 (4%)
 Strand=Plus/Plus

Query  1    AGAGATAACAAACTTCAGAAACTTCTAGACCCtttttttttACCTTCCGGCGAATCCTAA  60
            ||||||||||||||||||||||||||||  ||    ||||||  |||||| | |||||||
Sbjct  24   AGAGATAACAAACTTCAGAAACTTCTAGGGCC---ATTTTTA--TTCCGGTGCATCCTAA  78

Query  61   TCATGATATCTGTTGTAATCATTACTGAGTTACTGGTGGAGTACACGACGGCTCTTGCTA  120
            |||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||
Sbjct  79   TCATGATATCTGTTGTAATCATCACTGAGTTACTTTTGGAGTACACGACGGCTCTTGCTA  138

Query  121  AACTCACTGCCGGGGTTTTTCCGAGGCGACAAGGCGACAGGAATGTTATACGTATCGGTG  180
            ||||||| ||||||||| ||||||| || ||||||||||| |||||||||||||| || |
Sbjct  139  AACTCACCGCCGGGGTTCTTCCGAGACGGCAAGGCGACAGAAATGTTATACGTATTGGCG  198

Query  181  GTTTCTCTCTGCCTTGTCCTCCTAGATCCTCACCTGTTCCAGACTTTTCTTCTCATCTTG  240
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  199  GTTTCTCTCTGCCTTGTCCTCCTAGATCCTCACCTGTTCCAGATTTTTCTTCTCATCTTG  258

Query  241  TCGATTTCTGATCTCTGTGCTACGC-TTGATCTAAATTTTGTTTTTTCACCGGAGATTCT  299
            ||||||||||| ||||| ||||||| || |||| ||||||| |||||||||||||||| |
Sbjct  259  TCGATTTCTGAACTCTGCGCTACGCCTTAATCTCAATTTTGGTTTTTCACCGGAGATTAT  318

Query  300  GGCGGCCGAGACTTTTTTCTGGGCGTCTGATCTGATCTCTCCGTCTGTAGAATA--TTTT  357
            | | ||| |||||||||||  ||||||||||||   ||| | ||||||||||||  ||||
Sbjct  319  GACTGCCAAGACTTTTTTCCCGGCGTCTGATCT---CTC-C-GTCTGTAGAATACCTTTT  373

Query  358  TCTGGATTTT  367
            | || |||||
Sbjct  374  T-TGTATTTT  382



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5