BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492021

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27652.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   449    7e-126


> AT4G27652.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G27657.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:13809833-13810356 FORWARD LENGTH=524
Length=524

 Score =  449 bits (243),  Expect = 7e-126
 Identities = 304/331 (92%), Gaps = 13/331 (4%)
 Strand=Plus/Plus

Query  1    ACAAGCCACAACACCACCAATCACA-----C--AAAAGATCAGAGACTTCTAGATCCTTC  53
            ||||||||||||| |||||||||||     |  ||||||||||||| |||||||||||||
Sbjct  1    ACAAGCCACAACAACACCAATCACACTTCTCAAAAAAGATCAGAGATTTCTAGATCCTTC  60

Query  54   TTCTTCTCCTGCAAATTCCTCTACCTGAATCTTCCAATTTCTGTATATCGATCATGATCT  113
            |||||||||||||||||| |||||||||||||||||| || | || ||||||||||||||
Sbjct  61   TTCTTCTCCTGCAAATTCATCTACCTGAATCTTCCAACTT-TATAAATCGATCATGATCT  119

Query  114  CTGTTGTAATCATCGCTGAGTTACTAGTGGAGTACACGGCGGCTCTCGCGAAACTCACCG  173
            | || ||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||
Sbjct  120  CCGTCGTAATCATCGCTGAGTTACTAGTAGAGTACACGACGGCTCTCGCGAAACTAACCG  179

Query  174  CCGGGATTCTTCCATCGAGACGGCGAGGCGATAGTAACGTTGTACGGATTGGTGGTTTCT  233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  CCGGGATTCTTCCATCGAGACGGCGAGGCGATAGTAACGTTGTACGGATTGGTGGTTTCT  239

Query  234  CTCTGCCTTGTCCTTCTCCGTCGAGTACTAGTA---GTCGATCGTC-GCCGATTCCAGAT  289
            ||||||||||||||||||||||||||| |||||   ||||||| || || ||||||||||
Sbjct  240  CTCTGCCTTGTCCTTCTCCGTCGAGTAGTAGTACTAGTCGATCATCTGC-GATTCCAGAT  298

Query  290  TTCTCCTCTCATCTCGTTGATTTCTGATCTT  320
            ||||| |||||||||||||||||||||||||
Sbjct  299  TTCTCTTCTCATCTCGTTGATTTCTGATCTT  329



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5