BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492028
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27610.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1797 0.0
AT4G27620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 643 0.0
> AT4G27610.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G27620.2);
Has 1304 Blast hits to 1173 proteins in 200 species: Archae
- 14; Bacteria - 115; Metazoa - 628; Fungi - 104; Plants -
95; Viruses - 8; Other Eukaryotes - 340 (source: NCBI BLink).
| chr4:13785432-13788350 REVERSE LENGTH=1608
Length=1608
Score = 1797 bits (973), Expect = 0.0
Identities = 1173/1265 (93%), Gaps = 32/1265 (3%)
Strand=Plus/Plus
Query 291 AGGTTATGTTTGGATGATAGAGACATTTTAG-CTTTCTCTTACAATGAGTACACGAAGAA 349
||||||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||||
Sbjct 345 AGGTTATGTTTGGATGATAGATACATTTT-GACTTTCTCATACAATGAGTACACGAAGAA 403
Query 350 ATGGCATCTCCAAGCATCAGCGAGCTGATAAATTTTGTGGTGATA-GGCCAAATTGGATA 408
||||||| |||||||||||||||| |||||||||||||||||| | ||||||| ||||||
Sbjct 404 ATGGCATTTCCAAGCATCAGCGAGGTGATAAATTTTGTGGTGA-AGGGCCAAACTGGATA 462
Query 409 CTAATTGCTGGGGGTGCCTTGTTGAGCACATTGTCCATTCGCTTTGGCTACAAGCTAAAG 468
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 463 CTAATTGCAGGGGGTGCATTGTTGAGCACATTGTCCATTCGCTTTGGATACAAGCTAAAG 522
Query 469 CAGTCGCTTGATTGGAAACCTCAATCGAATGGCTCTGCTGGAATAAAACCTAATGGAACA 528
||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 523 CAGTCGCTTGATTCGAAACCTCAATCAAATGGCTCTGCTGGATTAAAACCTAATGGAACA 582
Query 529 TCTGAGAGGCAAAAATCTACAAGCTGTTGCTTGCACTCTAACTCATCTTCCTGTACACAC 588
|||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 583 TCTGAGAGGCAAAAATCTACAAGCTGTTGCTTACACTCTACCACATCTTCCTGTACACAA 642
Query 589 AATAATGATTATTGTTGCTTCCGCTCCATTCCAGGAACTGAGAATGTGGAGGGAAAAGAG 648
|||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 643 AATAATGATTTTTGTTGCTTCCGCTCCATTCCAGGAACTGAGAGTGTGGAAGGAAAAGAG 702
Query 649 GTGACAAACGAGCAAATGATATCCGCATCTGATACTTCACTGCCTCTTGCGAAAGTTCCT 708
||||||| |||||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 703 GTGACAAGCGAGCAAATGATATCCGCATCTGACACTTCACTGCCTCTTGTGACAGTTCCT 762
Query 709 GCTCCATCATTTAGCAAAGAGAATGGAGTCATGTGGGCAACTTCTCCTGATCGCCTGGAA 768
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GCTCCATC---GAGCAAAGAGAATGGAGTCATGTGGGCAACTTCTCCTGATCGCCTGGAA 819
Query 769 CTTCCCCCAAGACCATACAATCACCATTCAAACTGCTCTGATTCTCCTTGTGTATCTGAA 828
|||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct 820 CTTCCCCCAAGACCATACAATCACAATTCAAACTGCTCAGATTCTCCTTGCGTATCTGAA 879
Query 829 ACCAGCTCAGACATTTTCAGCAAACGAGAAGTAATACAGAAACTAAGGCAGCAGCTGAAG 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 ACCAGCTCAGACATTTTCAGCAAACGAGAAGTAATACAGAAACTAAGGCAGCAGCTGAAG 939
Query 889 AGACGCGATGACATGATTCTGGAAATGCAGGAACAGATTCTAGAGCTGCAAAACTCGTAT 948
||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 940 AGACGGGATGACATGATACAGGAAATGCAAGAACAGATTCTAGAGCTGCAAAACTCGTAT 999
Query 949 AACGCGCAGATGTCACACTCTAGCCATCTACAGGCACAGCTAGACACACTGAACAGAGAT 1008
||||| |||| | ||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1000 AACGCACAGACGGCACACTCAAGCCATCTCCAGGCACAGCTAGACACACTGAACAGAGAT 1059
Query 1009 CTGTTTGAATCAGAAAGAGAAGTTCAGAGACTGAGAAAGGCGATAGCTGATCACAGCGTG 1068
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1060 CTGTTTGAATCAGAAAGAGAAGTTCAAAGACTGAGAAAGGCAATTGCTGATCACAGCGTG 1119
Query 1069 GGATG---CACTGGT-AGCAATGGCAAGACATCTCCAGTTGGACCTTGGAGCGGCCATGT 1124
||||| | | || |||||||||||||||||||| ||||||||||||| |||
Sbjct 1120 GGATGTGGCGC-GGACAGCAATGGCAAGACATCTCCGGTTGGACCTTGGA------ATG- 1171
Query 1125 GGACGGGTTTATGGACAGCGAAAGCAATTATGAGTCACAGGAAAAGAGCCTAAGGGATGG 1184
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1172 G--CGGGTTTATGGACAGCGAAAGCAATTATGAGTCACAAGAAAAGAGCCTAAGGGATGG 1229
Query 1185 AGAAAGAGTAGAGATGTTGAGAAAAGAAGTGAGTGAGCTTAAAGAGGTGATAGACGGGAA 1244
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1230 AGAAAGAGTAGAGATGTTGAGAAAGGAAGTGAGTGAGCTTAAAGAAGTGATAGATGGGAA 1289
Query 1245 GGAGTATCTACTTAGAAGCTATAAGGAGCAGAAGATAGAGCTTTCACAGAAGGTGAAAGA 1304
||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1290 AGAGTATCTACTTAGAAGCTATAAGGAGCAGAAGATTGAGCTTTCGCAGAAGGTAAAAGA 1349
Query 1305 GTTGCAGCAGAGACTGGACTCACAGCTCCCAAACATATTGTAGGTGGAAAGGTTAGGCAT 1364
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1350 GTTGCAGCAGAGACTGGACTCACAGCTCCAAAACTTATTGTAGGTGGAAAGGTTAGGCAT 1409
Query 1365 TGTGCATACTTGCGTCTGTTCCtttttttgttttcggttctttt-cctttttcGAGAAAA 1423
||||||||||||||||| || ||||||| ||| |||||||||| |||||||||||||||
Sbjct 1410 TGTGCATACTTGCGTCTCTTA-TTTTTTT-TTT-CGGTTCTTTTTCCTTTTTCGAGAAAA 1466
Query 1424 TGAATCTTA-T--GTCCTAAGAACGTTGGAGATGAAGAttttcaggttctttctggctt- 1479
||||||||| | || ||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1467 TGAATCTTAGTATGTACTAAGAACGGTGGAGATCAAGATTTTCAGGTTCTTTCTGGCTTT 1526
Query 1480 cagctttcgttttttgaatgtcttgattttggtttttttttt-AACATTTGGTGTAAAGG 1538
| |||||||||||| ||||||||||||| || |||||| ||| |||||||||||||||||
Sbjct 1527 CTGCTTTCGTTTTT-GAATGTCTTGATTCTG-TTTTTTCTTTCAACATTTGGTGTAAAGG 1584
Query 1539 AAAAT 1543
||||
Sbjct 1585 TAAAT 1589
Score = 311 bits (168), Expect = 1e-83
Identities = 226/252 (90%), Gaps = 12/252 (5%)
Strand=Plus/Plus
Query 65 TCTCTTCTACCTCTTCCCCTCCACTTTGCTTCTCTCTTTCCTCTCCGGGGGTTTTACTGT 124
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct 29 TCTCTTCAACCTCTTCCCCTCCACTTTGCTTCTCTCTCTCCTCCCCGGGGGTTTTACAGT 88
Query 125 AATATCATCGTCGGAGACTCTGCGATTCTTCACGGAATCTTATTTCTCTCTCTGCGATTT 184
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 89 CATATCATCGTCGGAGACTCTGCGATTCTTCACGGAATCGTATTTCTCTCTCAGCGATTT 148
Query 185 TT--CGATTCTCGAAGCTGCAAGGAC-A---A--A--CATTGAAACTCAAGCGGGAGAAC 234
|| |||||||||||||||||||||| | | | ||||||||||||||||||||||
Sbjct 149 TTTTCGATTCTCGAAGCTGCAAGGACCACCCATCAAACATTGAAACTCAAGCGGGAGAAA 208
Query 235 TTTTCTTTCTGGGGAGG-AAACTATGGAGCCCTAATGCTCATTTTCTGCTGTCTATGAGG 293
|||||| || |||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 209 TTTTCTGGCTCGGGAGGGAAACTATGGAGCCCTAATGCCCATTTTCTGCTGTCTATGAGG 268
Query 294 TTATGTTTGGAT 305
| |||| ||||
Sbjct 269 GT-TGTTGGGAT 279
> AT4G27620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures;
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G27610.3);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:13788861-13790918 REVERSE LENGTH=1390
Length=1390
Score = 643 bits (348), Expect = 0.0
Identities = 672/823 (82%), Gaps = 43/823 (5%)
Strand=Plus/Plus
Query 288 ATGAG-GTTATGTTTGGATGATAG-AGACA-TTTTAG-CTTTCTCTTACAATGAGTACAC 343
||||| |||| | ||||||||||| ||||| |||| | | |||||||||||||| |||||
Sbjct 165 ATGAGTGTTAAGGTTGGATGATAGAAGACATTTTTTGACCTTCTCTTACAATGACTACAC 224
Query 344 GAAGAAATGGCATCTCCAAGCATCAGCGAG-CTGATAAATTTT-GTGGTGATAGG-CCAA 400
||||||||||| | |||| ||||||||| | ||| | |||| | ||||| ||| ||||
Sbjct 225 GAAGAAATGGCGTTTCCAGGCATCAGCG-GTTTGA-GAGTTTTCGCGGTGA-AGGACCAA 281
Query 401 ATTGGATAC-TAATTGCTGGGGGTGCCTTGTTGAGCACATTGTCCATTCGCTTTGGCTAC 459
||||||| | |||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 282 ATTGGAT-CTTAATTGCTGGGGGTGCTTTGTTGAGTACATTGTCCATTCGTTTTGGCTAC 340
Query 460 AAGCTAAAGCAGTCGCTTGATTGGAAA---CCTCAATCGAATGGCTCTGCTGGAATAAAA 516
|| |||||||||| |||| | ||| ||||| || |||| | ||| |||| |||||
Sbjct 341 AAATTAAAGCAGTCTATTGACTCCAAACCTCCTCATTCCAATGCCACTGGTGGATTAAAA 400
Query 517 CCTAATGGAACATCTG--AGAGGCAAAAATCTACA-AGCTGTTGCTTGCACTCTAACT-C 572
|||||||||||| | | ||||| || || || | |||| |||||||| ||||| | |
Sbjct 401 CCTAATGGAACAACCGACAGAGG--AAGATTTA-AGGGCTGCTGCTTGCATTCTAA-TGC 456
Query 573 ATCTTCCTGTACACACAATAATGATTATTGTTGCTTCCGCTCCATTCCAGGAACTGAGAA 632
||| ||||| | | | ||| || |||||||||| | || || ||| |||||||||||
Sbjct 457 ATCACCCTGT-GA-A-AGGAATAATGATTGTTGCTTTCACTGCACTCCCGGAACTGAGAA 513
Query 633 TGTGGAGGGAAAAGA-GGTGACAAACGAGCAAAT-G-ATA-TCCGCATCTGATACTTCAC 688
|| ||| ||||| | | | ||||| |||||||| | | | | | || | |||||| |
Sbjct 514 TGGGGAAGGAAATCATGCT-ACAAATGAGCAAATGGCAGAGT-C-CA---G-TACTTCTC 566
Query 689 TGCCTCTTGCGAAAGTTCCTGCTCCATCATTTAGCAAAGAGAATGGAGTCATGTGGGCAA 748
||||||||| || |||||||||| |||||| ||||||||||| || |||| | |||| |
Sbjct 567 TGCCTCTTGTGACAGTTCCTGCTTCATCATATAGCAAAGAGAGTGCAGTCGTATGGGGAT 626
Query 749 CTTCTCCTGATCGCCTGGAACTTCC-CCCAAGACCATACAATCACCATTCAAACTGCTCT 807
|||||||||| | ||||||| | || || | ||||| |||| ||||| | ||||||
Sbjct 627 CTTCTCCTGACCACCTGGAAGTGCCGATGAA-AGCATACCATCAACATTCGACCTGCTCA 685
Query 808 GATTCTCCTTGTGTATCTGAAACCAGCTCAGACATTTTCAGCAAACGAGAAGTAATACAG 867
||||||||||| ||||||||| || |||||||||| |||||||| |||||||||||||||
Sbjct 686 GATTCTCCTTGCGTATCTGAATCCGGCTCAGACATCTTCAGCAAGCGAGAAGTAATACAG 745
Query 868 AAACTAAGGCAGCAGCTGAAGAGACGCGATGACATGATTCTGGAAATGCAGGAACAGATT 927
||||| ||||| |||||||||||||| || |||||||| | ||||||||||||||||||
Sbjct 746 AAACTGAGGCAACAGCTGAAGAGACGTGACGACATGATAGTTGAAATGCAGGAACAGATT 805
Query 928 CTAGAGCTGCAAAACTCG-TATAACGCGCAGATGTCACACTCTAGCCATCTACAGGCACA 986
|||||||||||||||||| || ||||| |||||| ||||||||||||| | || ||||
Sbjct 806 CTAGAGCTGCAAAACTCGCTA-AACGCCCAGATGGGACACTCTAGCCATATCCAAACACA 864
Query 987 GCTAGACACA-CTGAACAGAGATCTGTTTGAATCAGAAAGAGAAGTTCAGAGACTGAGAA 1045
||||||| || | ||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 865 GCTAGACGCAACA-AACAGGGACCTGTTTGAATCAGAAAGAGAAGTCCAGAGACTGAGAA 923
Query 1046 AGGCGATAGCTGATCACAGCGTGGGATGCACTGGTAGCAATGG 1088
|||| || ||||||||| |||||||| ||| |||||||||||
Sbjct 924 AGGCAATCGCTGATCACTGCGTGGGACACACAGGTAGCAATGG 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76154226765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5