BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492035

Length=719
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27580.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   876    0.0  
  AT5G54095.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   106    3e-22


> AT4G27580.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 9 plant 
structures; EXPRESSED DURING: 6 growth stages; Has 30201 
Blast hits to 17322 proteins in 780 species: Archae - 12; 
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 
| chr4:13765661-13766597 REVERSE LENGTH=777
Length=777

 Score =  876 bits (474),  Expect = 0.0
 Identities = 627/697 (90%), Gaps = 25/697 (4%)
 Strand=Plus/Plus

Query  1    TCCTCCGGATAAATAGGTCGTGACAGAGAATCAAAGGTGTAATGACTTGTGAATCTCAAA  60
            ||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| |||
Sbjct  1    TCCTCCGGATAAATAGGTCCTCACAGAGAATCAAAGGTGTAATGACTTGTGATTCTGAAA  60

Query  61   TTGATTAAAACTTTACCAGAAATAGCTTTAAGTCCATACGATCTCCTATATGTATCTGTT  120
            || |  ||||||||||| ||||||||||| |||||||||||| |||| |||| |||||||
Sbjct  61   TTAACCAAAACTTTACCTGAAATAGCTTT-AGTCCATACGAT-TCCTGTATGAATCTGTT  118

Query  121  CACAGCCCTCTCCTTCATTTGCTCAGCCTCCGATTATAAAA-T-AAGACTTTTGGCCTCT  178
            |||||||||||||| ||||||||||||||||| |||||||| | |||| |||||||||||
Sbjct  119  CACAGCCCTCTCCTCCATTTGCTCAGCCTCCGGTTATAAAATTAAAGAGTTTTGGCCTCT  178

Query  179  TCAAAG-CAGCTTTGTGTAAAGGAGTTC-CctttttctttctttcttttttGGCTCCACA  236
            |||||| ||||||||| || |||||||| || ||||||||||||||||||| ||||||||
Sbjct  179  TCAAAGTCAGCTTTGTCTAGAGGAGTTCTCC-TTTTCTTTCTTTCTTTTTTTGCTCCACA  237

Query  237  GCTCTCCCCATTGTAAtttttttCTTTCCAAACTAATCTTTTCAAT-CAAAAACTATGGG  295
            ||||| |||||||||| |||| | |||||||||||||| ||||||| ||||||| |||||
Sbjct  238  GCTCTTCCCATTGTAAGTTTTGT-TTTCCAAACTAATCCTTTCAATCCAAAAACCATGGG  296

Query  296  AGGCTGTGCGAGCAAACCTAAGGAATCTGATATCGTCGAAGGCTCTGTCCCGACCGAAAA  355
            || ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct  297  AGCCTGTGCGAGCAAACCTAAGGAATCTGACATCGTCGAAGGCTCTGTCTCGACCGAAAA  356

Query  356  TGCTGTTGTTGAGTCCAAGAATGCCGCGATTGAGACAGACT-CCACATTAACTCAGGAGA  414
            |||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||
Sbjct  357  TGCTGTTGTTGAGTCCAAGAATGCCGCGACCGAGACAGA-TGCCACATTAACTCAGGAGA  415

Query  415  AGAAGGAAGAGTCCAGTGAAGCGACAAAGAAGGACGGTGAAACAAAAGAAGACTCCTCTG  474
            ||||||||||||||| ||||| |||||||||||| ||||| |||||||| ||||||||||
Sbjct  416  AGAAGGAAGAGTCCATTGAAGAGACAAAGAAGGAAGGTGAGACAAAAGAGGACTCCTCTG  475

Query  475  AGGCAACCAAGGCTGAGCCAACTCCAGAATCTGTGAAGGCAGAAGAGAAAGCATCTTCGG  534
            ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |
Sbjct  476  AGGCAACCAAGGCTGAGCCAACTCCAGAAGCTGTGAAGGCAGAAGAAAAAACATCTTCTG  535

Query  535  AGACTGAGCCACCAGCACAAGAGACGACCACACCTGCTTCCAAAAGCGATGAGGCCCCTC  594
            |||||||||||||||||||||||||  | ||||||||| | |||| ||||||||||||||
Sbjct  536  AGACTGAGCCACCAGCACAAGAGAC--C-ACACCTGCTGCTAAAACCGATGAGGCCCCTC  592

Query  595  TCGTGATACTTTGATA---ATTTCA--AAATC--ATG-TGTAT-A-TATGTGCAAGTGCA  644
            ||||||| |||||||    ||||||  |||||  |   |  || | ||||||||||||||
Sbjct  593  TCGTGATCCTTTGATTTTCATTTCATCAAATCTCAAAATC-ATGAGTATGTGCAAGTGCA  651

Query  645  AGTGTTTCTCACTTTGTAATTCGTATGTTCATCTCTG  681
            |||||||||||| |||| |||||||||||||||||||
Sbjct  652  AGTGTTTCTCACATTGTTATTCGTATGTTCATCTCTG  688


> AT5G54095.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; EXPRESSED 
IN: 9 plant structures; EXPRESSED DURING: L mature pollen 
stage, M germinated pollen stage, 4 anthesis, C globular stage, 
petal differentiation and expansion stage; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G27580.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr5:21952733-21953507 REVERSE LENGTH=681
Length=681

 Score =  106 bits (57),  Expect = 3e-22
 Identities = 95/112 (85%), Gaps = 7/112 (6%)
 Strand=Plus/Plus

Query  224  ttttGGCTCCACAGCTCTCCCCA-T-TGT-AAttt-ttttC-TTTCCAAACTAATCT-TT  277
            |||| ||||||||| ||| |||| | ||| ||||| ||||| ||| |||||  || | ||
Sbjct  67   TTTTAGCTCCACAGTTCTTCCCATTGTGTAAATTTGTTTTCGTTT-CAAACCGATTTCTT  125

Query  278  TCAATCAAAAACTATGGGAGGCTGTGCGAGCAAACCTAAGGAATCTGATATC  329
            || || ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  126  TCTATTAAACACCATGGGAGGCTGTGCGAGCAAACCTAAGGAATCTGATATC  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34862498018


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5